Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00225 and SGL_RS00230 are separated by 201 nucleotides SGL_RS00230 and SGL_RS00235 are separated by 11 nucleotides SGL_RS00235 and SGL_RS00240 are separated by 218 nucleotides SGL_RS00240 and SGL_RS00245 are separated by 44 nucleotides
SGL_RS00225: SGL_RS00225 - glycosyltransferase, at 48,291 to 49,505
_RS00225
SGL_RS00230: SGL_RS00230 - hypothetical protein, at 49,707 to 50,099
_RS00230
SGL_RS00235: SGL_RS00235 - cellulose synthase operon protein YhjQ/BcsQ, at 50,111 to 52,333
_RS00235
SGL_RS00240: SGL_RS00240 - cyanoexosortase A system-associated protein, at 52,552 to 52,992
_RS00240
SGL_RS00245: SGL_RS00245 - glycosyltransferase, at 53,037 to 54,026
_RS00245
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 49.210 kb on - strand, within SGL_RS00225 at 49.212 kb on + strand, within SGL_RS00225 at 49.248 kb on + strand, within SGL_RS00225 at 49.248 kb on + strand, within SGL_RS00225 at 49.264 kb on - strand, within SGL_RS00225 at 49.266 kb on - strand, within SGL_RS00225 at 49.296 kb on + strand, within SGL_RS00225 at 49.315 kb on - strand, within SGL_RS00225 at 49.320 kb on + strand, within SGL_RS00225 at 49.328 kb on - strand, within SGL_RS00225 at 49.695 kb on + strand at 49.739 kb on - strand at 49.754 kb on + strand, within SGL_RS00230 at 49.755 kb on - strand, within SGL_RS00230 at 49.864 kb on - strand, within SGL_RS00230 at 49.963 kb on - strand, within SGL_RS00230 at 50.196 kb on + strand at 50.217 kb on - strand at 50.217 kb on - strand at 50.217 kb on - strand at 50.235 kb on - strand at 50.252 kb on + strand at 50.270 kb on - strand at 50.309 kb on + strand at 50.553 kb on + strand, within SGL_RS00235 at 50.556 kb on + strand, within SGL_RS00235 at 50.567 kb on + strand, within SGL_RS00235 at 50.693 kb on + strand, within SGL_RS00235 at 50.696 kb on - strand, within SGL_RS00235 at 50.893 kb on + strand, within SGL_RS00235 at 50.977 kb on + strand, within SGL_RS00235 at 51.014 kb on + strand, within SGL_RS00235 at 51.014 kb on + strand, within SGL_RS00235 at 51.057 kb on + strand, within SGL_RS00235 at 51.099 kb on - strand, within SGL_RS00235 at 51.365 kb on + strand, within SGL_RS00235 at 51.643 kb on - strand, within SGL_RS00235 at 51.643 kb on - strand, within SGL_RS00235 at 51.668 kb on - strand, within SGL_RS00235 at 52.138 kb on - strand at 52.222 kb on + strand at 52.276 kb on - strand at 52.365 kb on - strand at 52.380 kb on + strand at 52.382 kb on + strand at 52.429 kb on - strand at 52.513 kb on - strand at 52.515 kb on + strand at 52.515 kb on + strand at 52.515 kb on + strand at 52.515 kb on + strand at 52.545 kb on - strand at 52.593 kb on + strand at 52.620 kb on + strand, within SGL_RS00240 at 52.620 kb on + strand, within SGL_RS00240 at 52.706 kb on + strand, within SGL_RS00240 at 52.868 kb on - strand, within SGL_RS00240 at 52.927 kb on + strand, within SGL_RS00240 at 52.953 kb on + strand at 52.958 kb on + strand at 52.958 kb on + strand at 52.958 kb on + strand at 52.961 kb on - strand at 52.966 kb on - strand at 52.966 kb on - strand at 52.966 kb on - strand at 52.986 kb on + strand at 52.994 kb on - strand at 52.994 kb on - strand at 53.002 kb on + strand at 53.025 kb on + strand at 53.083 kb on + strand at 53.113 kb on + strand at 53.190 kb on - strand, within SGL_RS00245 at 53.273 kb on - strand, within SGL_RS00245 at 53.283 kb on - strand, within SGL_RS00245
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 49,210 - SGL_RS00225 0.76 -2.5 49,212 + SGL_RS00225 0.76 +0.6 49,248 + SGL_RS00225 0.79 -4.7 49,248 + SGL_RS00225 0.79 -5.3 49,264 - SGL_RS00225 0.80 -4.9 49,266 - SGL_RS00225 0.80 -4.7 49,296 + SGL_RS00225 0.83 -2.4 49,315 - SGL_RS00225 0.84 -4.0 49,320 + SGL_RS00225 0.85 -3.8 49,328 - SGL_RS00225 0.85 -5.6 49,695 + -2.5 49,739 - -0.3 49,754 + SGL_RS00230 0.12 -0.1 49,755 - SGL_RS00230 0.12 -0.6 49,864 - SGL_RS00230 0.40 -1.6 49,963 - SGL_RS00230 0.65 -1.1 50,196 + -4.5 50,217 - -1.9 50,217 - -4.6 50,217 - -3.2 50,235 - -2.2 50,252 + -3.4 50,270 - -4.0 50,309 + -4.2 50,553 + SGL_RS00235 0.20 -3.9 50,556 + SGL_RS00235 0.20 -2.3 50,567 + SGL_RS00235 0.21 -2.2 50,693 + SGL_RS00235 0.26 -4.6 50,696 - SGL_RS00235 0.26 -1.0 50,893 + SGL_RS00235 0.35 -3.0 50,977 + SGL_RS00235 0.39 -4.4 51,014 + SGL_RS00235 0.41 -4.7 51,014 + SGL_RS00235 0.41 -2.8 51,057 + SGL_RS00235 0.43 -1.2 51,099 - SGL_RS00235 0.44 -2.8 51,365 + SGL_RS00235 0.56 -3.7 51,643 - SGL_RS00235 0.69 -3.2 51,643 - SGL_RS00235 0.69 -3.9 51,668 - SGL_RS00235 0.70 -4.5 52,138 - -2.4 52,222 + -0.7 52,276 - -5.0 52,365 - -2.0 52,380 + -4.1 52,382 + -1.2 52,429 - +0.5 52,513 - -0.2 52,515 + -0.8 52,515 + +0.1 52,515 + -2.6 52,515 + -0.6 52,545 - +1.8 52,593 + -1.6 52,620 + SGL_RS00240 0.15 +0.8 52,620 + SGL_RS00240 0.15 +2.0 52,706 + SGL_RS00240 0.35 -2.0 52,868 - SGL_RS00240 0.72 -0.1 52,927 + SGL_RS00240 0.85 +1.0 52,953 + +0.5 52,958 + -1.2 52,958 + -1.5 52,958 + -0.4 52,961 - -1.5 52,966 - +0.3 52,966 - -2.3 52,966 - -1.3 52,986 + -2.2 52,994 - +0.4 52,994 - +0.6 53,002 + -0.5 53,025 + -0.5 53,083 + -3.9 53,113 + -1.8 53,190 - SGL_RS00245 0.15 -2.9 53,273 - SGL_RS00245 0.24 -2.7 53,283 - SGL_RS00245 0.25 -2.2
Or see this region's nucleotide sequence