Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00215

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00210 and SGL_RS00215 overlap by 4 nucleotidesSGL_RS00215 and SGL_RS00220 are separated by 4 nucleotides SGL_RS00210: SGL_RS00210 - hypothetical protein, at 44,338 to 45,855 _RS00210 SGL_RS00215: SGL_RS00215 - glycosyltransferase family 4 protein, at 45,852 to 46,940 _RS00215 SGL_RS00220: SGL_RS00220 - oligosaccharide flippase family protein, at 46,945 to 48,288 _RS00220 Position (kb) 45 46 47Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 44.992 kb on - strand, within SGL_RS00210at 45.310 kb on + strand, within SGL_RS00210at 45.540 kb on + strand, within SGL_RS00210at 45.915 kb on - strandat 45.944 kb on + strandat 45.974 kb on + strand, within SGL_RS00215at 46.031 kb on - strand, within SGL_RS00215at 46.076 kb on - strand, within SGL_RS00215at 46.097 kb on + strand, within SGL_RS00215at 46.145 kb on - strand, within SGL_RS00215at 46.156 kb on + strand, within SGL_RS00215at 46.164 kb on + strand, within SGL_RS00215at 46.363 kb on - strand, within SGL_RS00215at 46.414 kb on + strand, within SGL_RS00215at 46.432 kb on + strand, within SGL_RS00215at 46.443 kb on - strand, within SGL_RS00215at 46.455 kb on - strand, within SGL_RS00215at 46.518 kb on - strand, within SGL_RS00215at 46.578 kb on + strand, within SGL_RS00215at 46.578 kb on - strand, within SGL_RS00215at 46.735 kb on - strand, within SGL_RS00215at 46.899 kb on - strandat 46.917 kb on + strandat 46.925 kb on - strandat 47.089 kb on - strand, within SGL_RS00220at 47.214 kb on + strand, within SGL_RS00220at 47.268 kb on + strand, within SGL_RS00220at 47.305 kb on + strand, within SGL_RS00220at 47.366 kb on - strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.378 kb on + strand, within SGL_RS00220at 47.439 kb on + strand, within SGL_RS00220at 47.457 kb on - strand, within SGL_RS00220at 47.479 kb on + strand, within SGL_RS00220at 47.511 kb on - strand, within SGL_RS00220at 47.518 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.532 kb on + strand, within SGL_RS00220at 47.540 kb on - strand, within SGL_RS00220at 47.554 kb on - strand, within SGL_RS00220at 47.625 kb on - strand, within SGL_RS00220at 47.817 kb on + strand, within SGL_RS00220at 47.852 kb on + strand, within SGL_RS00220at 47.905 kb on - strand, within SGL_RS00220

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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44,992 - SGL_RS00210 0.43 -4.9
45,310 + SGL_RS00210 0.64 -1.5
45,540 + SGL_RS00210 0.79 -4.9
45,915 - -0.5
45,944 + -3.7
45,974 + SGL_RS00215 0.11 -2.8
46,031 - SGL_RS00215 0.16 -3.7
46,076 - SGL_RS00215 0.21 -5.4
46,097 + SGL_RS00215 0.22 -5.0
46,145 - SGL_RS00215 0.27 -4.6
46,156 + SGL_RS00215 0.28 -3.1
46,164 + SGL_RS00215 0.29 -3.0
46,363 - SGL_RS00215 0.47 -3.8
46,414 + SGL_RS00215 0.52 -4.0
46,432 + SGL_RS00215 0.53 -4.3
46,443 - SGL_RS00215 0.54 -4.5
46,455 - SGL_RS00215 0.55 -2.8
46,518 - SGL_RS00215 0.61 -0.4
46,578 + SGL_RS00215 0.67 -3.7
46,578 - SGL_RS00215 0.67 -4.9
46,735 - SGL_RS00215 0.81 -6.1
46,899 - -4.8
46,917 + -1.8
46,925 - -4.7
47,089 - SGL_RS00220 0.11 -1.4
47,214 + SGL_RS00220 0.20 -1.5
47,268 + SGL_RS00220 0.24 -4.9
47,305 + SGL_RS00220 0.27 -4.3
47,366 - SGL_RS00220 0.31 -4.1
47,378 + SGL_RS00220 0.32 -5.0
47,378 + SGL_RS00220 0.32 -4.9
47,378 + SGL_RS00220 0.32 -6.5
47,439 + SGL_RS00220 0.37 -2.0
47,457 - SGL_RS00220 0.38 -0.8
47,479 + SGL_RS00220 0.40 -5.2
47,511 - SGL_RS00220 0.42 -6.0
47,518 + SGL_RS00220 0.43 -5.1
47,532 + SGL_RS00220 0.44 -2.6
47,532 + SGL_RS00220 0.44 -4.7
47,540 - SGL_RS00220 0.44 -4.9
47,554 - SGL_RS00220 0.45 -6.1
47,625 - SGL_RS00220 0.51 -1.3
47,817 + SGL_RS00220 0.65 -2.5
47,852 + SGL_RS00220 0.67 -5.5
47,905 - SGL_RS00220 0.71 -2.5

Or see this region's nucleotide sequence