Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00210

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS00205 and SGL_RS00210 are separated by 44 nucleotidesSGL_RS00210 and SGL_RS00215 overlap by 4 nucleotides SGL_RS00205: SGL_RS00205 - sulfotransferase, at 43,343 to 44,293 _RS00205 SGL_RS00210: SGL_RS00210 - hypothetical protein, at 44,338 to 45,855 _RS00210 SGL_RS00215: SGL_RS00215 - glycosyltransferase family 4 protein, at 45,852 to 46,940 _RS00215 Position (kb) 44 45 46Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 43.439 kb on + strand, within SGL_RS00205at 43.668 kb on - strand, within SGL_RS00205at 43.823 kb on + strand, within SGL_RS00205at 43.857 kb on - strand, within SGL_RS00205at 43.885 kb on - strand, within SGL_RS00205at 43.885 kb on - strand, within SGL_RS00205at 43.931 kb on - strand, within SGL_RS00205at 43.968 kb on + strand, within SGL_RS00205at 43.976 kb on + strand, within SGL_RS00205at 44.070 kb on + strand, within SGL_RS00205at 44.079 kb on - strand, within SGL_RS00205at 44.103 kb on + strand, within SGL_RS00205at 44.112 kb on - strand, within SGL_RS00205at 44.131 kb on - strand, within SGL_RS00205at 44.159 kb on - strand, within SGL_RS00205at 44.182 kb on + strand, within SGL_RS00205at 44.223 kb on - strandat 44.233 kb on - strandat 44.342 kb on - strandat 44.346 kb on + strandat 44.356 kb on + strandat 44.374 kb on + strandat 44.404 kb on + strandat 44.449 kb on - strandat 44.460 kb on + strandat 44.504 kb on + strand, within SGL_RS00210at 44.509 kb on + strand, within SGL_RS00210at 44.517 kb on - strand, within SGL_RS00210at 44.525 kb on - strand, within SGL_RS00210at 44.628 kb on + strand, within SGL_RS00210at 44.669 kb on + strand, within SGL_RS00210at 44.669 kb on + strand, within SGL_RS00210at 44.722 kb on - strand, within SGL_RS00210at 44.724 kb on + strand, within SGL_RS00210at 44.730 kb on + strand, within SGL_RS00210at 44.732 kb on - strand, within SGL_RS00210at 44.754 kb on - strand, within SGL_RS00210at 44.992 kb on - strand, within SGL_RS00210at 45.310 kb on + strand, within SGL_RS00210at 45.540 kb on + strand, within SGL_RS00210at 45.915 kb on - strandat 45.944 kb on + strandat 45.974 kb on + strand, within SGL_RS00215at 46.031 kb on - strand, within SGL_RS00215at 46.076 kb on - strand, within SGL_RS00215at 46.097 kb on + strand, within SGL_RS00215at 46.145 kb on - strand, within SGL_RS00215at 46.156 kb on + strand, within SGL_RS00215at 46.164 kb on + strand, within SGL_RS00215at 46.363 kb on - strand, within SGL_RS00215at 46.414 kb on + strand, within SGL_RS00215at 46.432 kb on + strand, within SGL_RS00215at 46.443 kb on - strand, within SGL_RS00215at 46.455 kb on - strand, within SGL_RS00215at 46.518 kb on - strand, within SGL_RS00215at 46.578 kb on + strand, within SGL_RS00215at 46.578 kb on - strand, within SGL_RS00215at 46.735 kb on - strand, within SGL_RS00215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
43,439 + SGL_RS00205 0.10 -0.1
43,668 - SGL_RS00205 0.34 -1.8
43,823 + SGL_RS00205 0.50 -2.9
43,857 - SGL_RS00205 0.54 -1.6
43,885 - SGL_RS00205 0.57 +0.6
43,885 - SGL_RS00205 0.57 -1.1
43,931 - SGL_RS00205 0.62 -2.3
43,968 + SGL_RS00205 0.66 -3.5
43,976 + SGL_RS00205 0.67 -1.8
44,070 + SGL_RS00205 0.76 -2.5
44,079 - SGL_RS00205 0.77 -2.2
44,103 + SGL_RS00205 0.80 -1.6
44,112 - SGL_RS00205 0.81 -3.0
44,131 - SGL_RS00205 0.83 -2.5
44,159 - SGL_RS00205 0.86 -0.8
44,182 + SGL_RS00205 0.88 -1.0
44,223 - -2.2
44,233 - -2.0
44,342 - -1.5
44,346 + -2.0
44,356 + -2.4
44,374 + -0.7
44,404 + -0.7
44,449 - -0.1
44,460 + -0.9
44,504 + SGL_RS00210 0.11 -1.3
44,509 + SGL_RS00210 0.11 -2.0
44,517 - SGL_RS00210 0.12 -2.2
44,525 - SGL_RS00210 0.12 -1.4
44,628 + SGL_RS00210 0.19 -2.2
44,669 + SGL_RS00210 0.22 -2.6
44,669 + SGL_RS00210 0.22 -4.0
44,722 - SGL_RS00210 0.25 -2.4
44,724 + SGL_RS00210 0.25 -4.9
44,730 + SGL_RS00210 0.26 -4.8
44,732 - SGL_RS00210 0.26 -2.6
44,754 - SGL_RS00210 0.27 -3.3
44,992 - SGL_RS00210 0.43 -4.9
45,310 + SGL_RS00210 0.64 -1.5
45,540 + SGL_RS00210 0.79 -4.9
45,915 - -0.5
45,944 + -3.7
45,974 + SGL_RS00215 0.11 -2.8
46,031 - SGL_RS00215 0.16 -3.7
46,076 - SGL_RS00215 0.21 -5.4
46,097 + SGL_RS00215 0.22 -5.0
46,145 - SGL_RS00215 0.27 -4.6
46,156 + SGL_RS00215 0.28 -3.1
46,164 + SGL_RS00215 0.29 -3.0
46,363 - SGL_RS00215 0.47 -3.8
46,414 + SGL_RS00215 0.52 -4.0
46,432 + SGL_RS00215 0.53 -4.3
46,443 - SGL_RS00215 0.54 -4.5
46,455 - SGL_RS00215 0.55 -2.8
46,518 - SGL_RS00215 0.61 -0.4
46,578 + SGL_RS00215 0.67 -3.7
46,578 - SGL_RS00215 0.67 -4.9
46,735 - SGL_RS00215 0.81 -6.1

Or see this region's nucleotide sequence