Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04532 and MPMX20_04533 are separated by 48 nucleotides MPMX20_04533 and MPMX20_04534 are separated by 200 nucleotides MPMX20_04534 and MPMX20_04535 are separated by 119 nucleotides
MPMX20_04532: MPMX20_04532 - Met repressor, at 4,745,725 to 4,746,042
_04532
MPMX20_04533: MPMX20_04533 - 50S ribosomal protein L31, at 4,746,091 to 4,746,303
_04533
MPMX20_04534: MPMX20_04534 - Primosomal protein N', at 4,746,504 to 4,748,699
_04534
MPMX20_04535: MPMX20_04535 - HTH-type transcriptional repressor CytR, at 4,748,819 to 4,749,844
_04535
Position (kb) 4746
4747
4748
4749 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4745.633 kb on - strand at 4745.637 kb on + strand at 4745.667 kb on - strand at 4745.710 kb on + strand at 4745.710 kb on + strand at 4745.820 kb on - strand, within MPMX20_04532 at 4745.893 kb on + strand, within MPMX20_04532 at 4745.953 kb on - strand, within MPMX20_04532 at 4745.953 kb on - strand, within MPMX20_04532 at 4746.002 kb on - strand, within MPMX20_04532 at 4746.117 kb on - strand, within MPMX20_04533 at 4746.464 kb on + strand at 4748.695 kb on + strand at 4748.703 kb on - strand at 4748.703 kb on - strand at 4748.891 kb on + strand at 4748.899 kb on - strand at 4748.899 kb on - strand at 4748.943 kb on + strand, within MPMX20_04535 at 4748.945 kb on - strand, within MPMX20_04535 at 4748.946 kb on + strand, within MPMX20_04535 at 4749.002 kb on - strand, within MPMX20_04535 at 4749.026 kb on + strand, within MPMX20_04535 at 4749.048 kb on + strand, within MPMX20_04535 at 4749.064 kb on - strand, within MPMX20_04535 at 4749.091 kb on - strand, within MPMX20_04535 at 4749.109 kb on - strand, within MPMX20_04535 at 4749.145 kb on - strand, within MPMX20_04535 at 4749.180 kb on - strand, within MPMX20_04535 at 4749.210 kb on + strand, within MPMX20_04535 at 4749.242 kb on - strand, within MPMX20_04535 at 4749.252 kb on + strand, within MPMX20_04535 at 4749.323 kb on - strand, within MPMX20_04535 at 4749.351 kb on + strand, within MPMX20_04535 at 4749.502 kb on - strand, within MPMX20_04535 at 4749.532 kb on - strand, within MPMX20_04535 at 4749.569 kb on + strand, within MPMX20_04535 at 4749.623 kb on - strand, within MPMX20_04535 at 4749.694 kb on + strand, within MPMX20_04535
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 4,745,633 - +0.7 4,745,637 + -2.3 4,745,667 - -0.9 4,745,710 + -1.0 4,745,710 + +0.8 4,745,820 - MPMX20_04532 0.30 +1.7 4,745,893 + MPMX20_04532 0.53 -0.3 4,745,953 - MPMX20_04532 0.72 -1.2 4,745,953 - MPMX20_04532 0.72 -1.5 4,746,002 - MPMX20_04532 0.87 -1.0 4,746,117 - MPMX20_04533 0.12 -0.8 4,746,464 + +0.6 4,748,695 + -1.4 4,748,703 - +0.1 4,748,703 - +1.1 4,748,891 + -2.3 4,748,899 - +2.4 4,748,899 - -1.8 4,748,943 + MPMX20_04535 0.12 -1.3 4,748,945 - MPMX20_04535 0.12 +0.6 4,748,946 + MPMX20_04535 0.12 -1.3 4,749,002 - MPMX20_04535 0.18 -1.3 4,749,026 + MPMX20_04535 0.20 -0.5 4,749,048 + MPMX20_04535 0.22 -0.3 4,749,064 - MPMX20_04535 0.24 -0.1 4,749,091 - MPMX20_04535 0.27 +1.0 4,749,109 - MPMX20_04535 0.28 +0.1 4,749,145 - MPMX20_04535 0.32 -1.8 4,749,180 - MPMX20_04535 0.35 -1.3 4,749,210 + MPMX20_04535 0.38 -0.3 4,749,242 - MPMX20_04535 0.41 -1.5 4,749,252 + MPMX20_04535 0.42 -2.4 4,749,323 - MPMX20_04535 0.49 -0.6 4,749,351 + MPMX20_04535 0.52 -0.8 4,749,502 - MPMX20_04535 0.67 +0.6 4,749,532 - MPMX20_04535 0.69 -0.3 4,749,569 + MPMX20_04535 0.73 -2.6 4,749,623 - MPMX20_04535 0.78 -0.6 4,749,694 + MPMX20_04535 0.85 +0.2
Or see this region's nucleotide sequence