Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04513

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04512 and MPMX20_04513 are separated by 386 nucleotidesMPMX20_04513 and MPMX20_04514 overlap by 56 nucleotides MPMX20_04512: MPMX20_04512 - 16S ribosomal RNA, at 4,718,274 to 4,719,809 _04512 MPMX20_04513: MPMX20_04513 - Glutamate racemase, at 4,720,196 to 4,721,047 _04513 MPMX20_04514: MPMX20_04514 - Vitamin B12 transporter BtuB, at 4,720,992 to 4,722,842 _04514 Position (kb) 4720 4721 4722Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4720.083 kb on + strandat 4720.099 kb on - strandat 4721.102 kb on + strandat 4721.102 kb on + strandat 4721.115 kb on - strandat 4721.141 kb on + strandat 4721.141 kb on + strandat 4721.141 kb on + strandat 4721.141 kb on + strandat 4721.141 kb on + strandat 4721.141 kb on + strandat 4721.142 kb on - strandat 4721.143 kb on - strandat 4721.144 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.149 kb on - strandat 4721.164 kb on - strandat 4721.176 kb on - strandat 4721.191 kb on + strand, within MPMX20_04514at 4721.199 kb on + strand, within MPMX20_04514at 4721.252 kb on - strand, within MPMX20_04514at 4721.252 kb on - strand, within MPMX20_04514at 4721.260 kb on - strand, within MPMX20_04514at 4721.269 kb on + strand, within MPMX20_04514at 4721.282 kb on + strand, within MPMX20_04514at 4721.303 kb on - strand, within MPMX20_04514at 4721.311 kb on + strand, within MPMX20_04514at 4721.320 kb on + strand, within MPMX20_04514at 4721.327 kb on + strand, within MPMX20_04514at 4721.335 kb on - strand, within MPMX20_04514at 4721.368 kb on + strand, within MPMX20_04514at 4721.368 kb on + strand, within MPMX20_04514at 4721.376 kb on - strand, within MPMX20_04514at 4721.376 kb on - strand, within MPMX20_04514at 4721.376 kb on - strand, within MPMX20_04514at 4721.376 kb on - strand, within MPMX20_04514at 4721.431 kb on - strand, within MPMX20_04514at 4721.487 kb on + strand, within MPMX20_04514at 4721.517 kb on + strand, within MPMX20_04514at 4721.540 kb on + strand, within MPMX20_04514at 4721.540 kb on + strand, within MPMX20_04514at 4721.545 kb on + strand, within MPMX20_04514at 4721.545 kb on + strand, within MPMX20_04514at 4721.545 kb on + strand, within MPMX20_04514at 4721.545 kb on + strand, within MPMX20_04514at 4721.548 kb on - strand, within MPMX20_04514at 4721.553 kb on - strand, within MPMX20_04514at 4721.553 kb on - strand, within MPMX20_04514at 4721.575 kb on - strand, within MPMX20_04514at 4721.659 kb on + strand, within MPMX20_04514at 4721.667 kb on - strand, within MPMX20_04514at 4721.667 kb on - strand, within MPMX20_04514at 4721.667 kb on - strand, within MPMX20_04514at 4721.733 kb on - strand, within MPMX20_04514at 4721.770 kb on + strand, within MPMX20_04514at 4721.770 kb on + strand, within MPMX20_04514at 4721.773 kb on - strand, within MPMX20_04514at 4721.778 kb on - strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.780 kb on + strand, within MPMX20_04514at 4721.783 kb on - strand, within MPMX20_04514at 4721.783 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.788 kb on - strand, within MPMX20_04514at 4721.800 kb on + strand, within MPMX20_04514at 4721.810 kb on - strand, within MPMX20_04514at 4721.813 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.835 kb on + strand, within MPMX20_04514at 4721.843 kb on - strand, within MPMX20_04514at 4721.843 kb on - strand, within MPMX20_04514at 4721.843 kb on - strand, within MPMX20_04514at 4721.843 kb on - strand, within MPMX20_04514at 4721.843 kb on - strand, within MPMX20_04514at 4721.843 kb on - strand, within MPMX20_04514at 4721.843 kb on - strand, within MPMX20_04514at 4721.848 kb on + strand, within MPMX20_04514at 4721.859 kb on - strand, within MPMX20_04514at 4721.890 kb on + strand, within MPMX20_04514at 4721.890 kb on + strand, within MPMX20_04514at 4721.893 kb on - strand, within MPMX20_04514at 4721.896 kb on - strand, within MPMX20_04514at 4721.898 kb on - strand, within MPMX20_04514at 4721.898 kb on - strand, within MPMX20_04514at 4721.898 kb on - strand, within MPMX20_04514at 4721.898 kb on - strand, within MPMX20_04514at 4721.898 kb on - strand, within MPMX20_04514at 4721.900 kb on + strand, within MPMX20_04514at 4721.900 kb on + strand, within MPMX20_04514at 4721.900 kb on + strand, within MPMX20_04514at 4721.901 kb on - strand, within MPMX20_04514at 4721.901 kb on - strand, within MPMX20_04514at 4721.901 kb on - strand, within MPMX20_04514at 4721.908 kb on - strand, within MPMX20_04514at 4721.908 kb on - strand, within MPMX20_04514at 4721.908 kb on - strand, within MPMX20_04514at 4721.908 kb on - strand, within MPMX20_04514at 4721.923 kb on - strand, within MPMX20_04514at 4721.938 kb on - strand, within MPMX20_04514at 4721.955 kb on + strand, within MPMX20_04514at 4721.955 kb on + strand, within MPMX20_04514at 4721.955 kb on + strand, within MPMX20_04514at 4721.963 kb on - strand, within MPMX20_04514at 4721.963 kb on - strand, within MPMX20_04514at 4721.963 kb on - strand, within MPMX20_04514at 4721.973 kb on + strand, within MPMX20_04514at 4721.973 kb on + strand, within MPMX20_04514at 4721.974 kb on + strand, within MPMX20_04514at 4721.980 kb on + strand, within MPMX20_04514at 4721.980 kb on + strand, within MPMX20_04514at 4721.981 kb on - strand, within MPMX20_04514at 4721.981 kb on - strand, within MPMX20_04514at 4721.981 kb on - strand, within MPMX20_04514at 4721.981 kb on - strand, within MPMX20_04514at 4721.988 kb on - strand, within MPMX20_04514at 4722.008 kb on + strand, within MPMX20_04514at 4722.013 kb on + strand, within MPMX20_04514at 4722.013 kb on + strand, within MPMX20_04514at 4722.013 kb on + strand, within MPMX20_04514at 4722.014 kb on - strand, within MPMX20_04514at 4722.021 kb on - strand, within MPMX20_04514at 4722.026 kb on - strand, within MPMX20_04514at 4722.026 kb on - strand, within MPMX20_04514

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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4,720,083 + -0.6
4,720,099 - -1.6
4,721,102 + -0.7
4,721,102 + -1.2
4,721,115 - -0.3
4,721,141 + +1.7
4,721,141 + -0.9
4,721,141 + -1.9
4,721,141 + +1.8
4,721,141 + +0.4
4,721,141 + +1.7
4,721,142 - +0.1
4,721,143 - +1.2
4,721,144 - -0.3
4,721,149 - -1.3
4,721,149 - +0.6
4,721,149 - +0.2
4,721,149 - -1.3
4,721,149 - -0.3
4,721,149 - -0.8
4,721,149 - -0.6
4,721,149 - +0.4
4,721,149 - -0.3
4,721,149 - +0.9
4,721,149 - -0.1
4,721,164 - -1.9
4,721,176 - +0.7
4,721,191 + MPMX20_04514 0.11 +0.3
4,721,199 + MPMX20_04514 0.11 +2.7
4,721,252 - MPMX20_04514 0.14 +1.1
4,721,252 - MPMX20_04514 0.14 -0.7
4,721,260 - MPMX20_04514 0.14 +1.7
4,721,269 + MPMX20_04514 0.15 +0.6
4,721,282 + MPMX20_04514 0.16 -0.3
4,721,303 - MPMX20_04514 0.17 +0.9
4,721,311 + MPMX20_04514 0.17 -3.6
4,721,320 + MPMX20_04514 0.18 -2.6
4,721,327 + MPMX20_04514 0.18 +0.5
4,721,335 - MPMX20_04514 0.19 +1.7
4,721,368 + MPMX20_04514 0.20 +0.1
4,721,368 + MPMX20_04514 0.20 -3.0
4,721,376 - MPMX20_04514 0.21 -1.0
4,721,376 - MPMX20_04514 0.21 +0.4
4,721,376 - MPMX20_04514 0.21 -2.8
4,721,376 - MPMX20_04514 0.21 -1.8
4,721,431 - MPMX20_04514 0.24 +1.7
4,721,487 + MPMX20_04514 0.27 +1.8
4,721,517 + MPMX20_04514 0.28 -0.8
4,721,540 + MPMX20_04514 0.30 +1.0
4,721,540 + MPMX20_04514 0.30 -1.4
4,721,545 + MPMX20_04514 0.30 -2.2
4,721,545 + MPMX20_04514 0.30 +0.9
4,721,545 + MPMX20_04514 0.30 +0.0
4,721,545 + MPMX20_04514 0.30 -0.3
4,721,548 - MPMX20_04514 0.30 -0.4
4,721,553 - MPMX20_04514 0.30 +1.2
4,721,553 - MPMX20_04514 0.30 -2.7
4,721,575 - MPMX20_04514 0.31 +0.7
4,721,659 + MPMX20_04514 0.36 +1.0
4,721,667 - MPMX20_04514 0.36 -0.3
4,721,667 - MPMX20_04514 0.36 -1.9
4,721,667 - MPMX20_04514 0.36 -0.8
4,721,733 - MPMX20_04514 0.40 +0.2
4,721,770 + MPMX20_04514 0.42 -3.0
4,721,770 + MPMX20_04514 0.42 +0.2
4,721,773 - MPMX20_04514 0.42 -2.7
4,721,778 - MPMX20_04514 0.42 +0.1
4,721,780 + MPMX20_04514 0.43 +1.1
4,721,780 + MPMX20_04514 0.43 -2.6
4,721,780 + MPMX20_04514 0.43 -1.8
4,721,780 + MPMX20_04514 0.43 -1.0
4,721,780 + MPMX20_04514 0.43 -1.2
4,721,780 + MPMX20_04514 0.43 -0.1
4,721,780 + MPMX20_04514 0.43 +1.4
4,721,780 + MPMX20_04514 0.43 -2.4
4,721,780 + MPMX20_04514 0.43 -0.4
4,721,780 + MPMX20_04514 0.43 -2.5
4,721,783 - MPMX20_04514 0.43 -1.4
4,721,783 - MPMX20_04514 0.43 -1.0
4,721,788 - MPMX20_04514 0.43 +0.4
4,721,788 - MPMX20_04514 0.43 -0.1
4,721,788 - MPMX20_04514 0.43 +0.8
4,721,788 - MPMX20_04514 0.43 -0.6
4,721,788 - MPMX20_04514 0.43 -1.6
4,721,788 - MPMX20_04514 0.43 -1.4
4,721,788 - MPMX20_04514 0.43 +0.3
4,721,788 - MPMX20_04514 0.43 -1.1
4,721,788 - MPMX20_04514 0.43 -1.8
4,721,788 - MPMX20_04514 0.43 -3.0
4,721,800 + MPMX20_04514 0.44 -1.7
4,721,810 - MPMX20_04514 0.44 -0.1
4,721,813 + MPMX20_04514 0.44 +0.9
4,721,835 + MPMX20_04514 0.46 -1.6
4,721,835 + MPMX20_04514 0.46 -0.8
4,721,835 + MPMX20_04514 0.46 -2.2
4,721,835 + MPMX20_04514 0.46 -1.1
4,721,835 + MPMX20_04514 0.46 -1.1
4,721,835 + MPMX20_04514 0.46 -1.0
4,721,835 + MPMX20_04514 0.46 +0.5
4,721,835 + MPMX20_04514 0.46 -2.1
4,721,835 + MPMX20_04514 0.46 -0.5
4,721,835 + MPMX20_04514 0.46 -2.5
4,721,835 + MPMX20_04514 0.46 +0.7
4,721,835 + MPMX20_04514 0.46 +0.0
4,721,835 + MPMX20_04514 0.46 -2.0
4,721,843 - MPMX20_04514 0.46 +0.1
4,721,843 - MPMX20_04514 0.46 -1.9
4,721,843 - MPMX20_04514 0.46 +1.1
4,721,843 - MPMX20_04514 0.46 -0.6
4,721,843 - MPMX20_04514 0.46 +1.2
4,721,843 - MPMX20_04514 0.46 +0.8
4,721,843 - MPMX20_04514 0.46 +1.0
4,721,848 + MPMX20_04514 0.46 +2.7
4,721,859 - MPMX20_04514 0.47 +1.6
4,721,890 + MPMX20_04514 0.49 -1.1
4,721,890 + MPMX20_04514 0.49 -2.2
4,721,893 - MPMX20_04514 0.49 -0.3
4,721,896 - MPMX20_04514 0.49 +0.3
4,721,898 - MPMX20_04514 0.49 +4.1
4,721,898 - MPMX20_04514 0.49 -0.9
4,721,898 - MPMX20_04514 0.49 -0.0
4,721,898 - MPMX20_04514 0.49 +0.1
4,721,898 - MPMX20_04514 0.49 -0.8
4,721,900 + MPMX20_04514 0.49 -1.5
4,721,900 + MPMX20_04514 0.49 +1.6
4,721,900 + MPMX20_04514 0.49 -0.5
4,721,901 - MPMX20_04514 0.49 -1.9
4,721,901 - MPMX20_04514 0.49 -1.0
4,721,901 - MPMX20_04514 0.49 +0.2
4,721,908 - MPMX20_04514 0.49 +0.8
4,721,908 - MPMX20_04514 0.49 +0.3
4,721,908 - MPMX20_04514 0.49 -0.2
4,721,908 - MPMX20_04514 0.49 -1.2
4,721,923 - MPMX20_04514 0.50 +2.3
4,721,938 - MPMX20_04514 0.51 -1.0
4,721,955 + MPMX20_04514 0.52 -2.2
4,721,955 + MPMX20_04514 0.52 +0.1
4,721,955 + MPMX20_04514 0.52 +1.9
4,721,963 - MPMX20_04514 0.52 -1.8
4,721,963 - MPMX20_04514 0.52 -1.0
4,721,963 - MPMX20_04514 0.52 -1.0
4,721,973 + MPMX20_04514 0.53 -0.3
4,721,973 + MPMX20_04514 0.53 -1.0
4,721,974 + MPMX20_04514 0.53 -1.0
4,721,980 + MPMX20_04514 0.53 -0.7
4,721,980 + MPMX20_04514 0.53 -1.9
4,721,981 - MPMX20_04514 0.53 -1.3
4,721,981 - MPMX20_04514 0.53 -1.2
4,721,981 - MPMX20_04514 0.53 -1.5
4,721,981 - MPMX20_04514 0.53 -0.1
4,721,988 - MPMX20_04514 0.54 -0.9
4,722,008 + MPMX20_04514 0.55 +1.0
4,722,013 + MPMX20_04514 0.55 +0.4
4,722,013 + MPMX20_04514 0.55 -0.2
4,722,013 + MPMX20_04514 0.55 -0.3
4,722,014 - MPMX20_04514 0.55 +0.4
4,722,021 - MPMX20_04514 0.56 +0.3
4,722,026 - MPMX20_04514 0.56 +0.6
4,722,026 - MPMX20_04514 0.56 +0.7

Or see this region's nucleotide sequence