Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03688 and MPMX20_03689 overlap by 10 nucleotides MPMX20_03689 and MPMX20_03690 are separated by 184 nucleotides MPMX20_03690 and MPMX20_03691 are separated by 6 nucleotides
MPMX20_03688: MPMX20_03688 - hypothetical protein, at 3,887,494 to 3,888,054
_03688
MPMX20_03689: MPMX20_03689 - hypothetical protein, at 3,888,045 to 3,888,509
_03689
MPMX20_03690: MPMX20_03690 - Thymidylate synthase, at 3,888,694 to 3,889,488
_03690
MPMX20_03691: MPMX20_03691 - Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase, at 3,889,495 to 3,890,370
_03691
Position (kb) 3888
3889
3890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3887.709 kb on - strand, within MPMX20_03688 at 3887.735 kb on - strand, within MPMX20_03688 at 3887.766 kb on - strand, within MPMX20_03688 at 3887.826 kb on + strand, within MPMX20_03688 at 3887.826 kb on + strand, within MPMX20_03688 at 3887.849 kb on + strand, within MPMX20_03688 at 3887.874 kb on - strand, within MPMX20_03688 at 3887.923 kb on - strand, within MPMX20_03688 at 3887.993 kb on + strand, within MPMX20_03688 at 3887.993 kb on - strand, within MPMX20_03688 at 3888.003 kb on - strand at 3888.035 kb on - strand at 3888.042 kb on - strand at 3888.092 kb on - strand, within MPMX20_03689 at 3888.130 kb on - strand, within MPMX20_03689 at 3888.141 kb on + strand, within MPMX20_03689 at 3888.246 kb on + strand, within MPMX20_03689 at 3888.246 kb on + strand, within MPMX20_03689 at 3888.266 kb on - strand, within MPMX20_03689 at 3888.266 kb on - strand, within MPMX20_03689 at 3888.285 kb on + strand, within MPMX20_03689 at 3888.293 kb on - strand, within MPMX20_03689 at 3888.293 kb on - strand, within MPMX20_03689 at 3888.293 kb on - strand, within MPMX20_03689 at 3888.320 kb on + strand, within MPMX20_03689 at 3888.325 kb on + strand, within MPMX20_03689 at 3888.333 kb on - strand, within MPMX20_03689 at 3888.367 kb on + strand, within MPMX20_03689 at 3888.385 kb on - strand, within MPMX20_03689 at 3888.431 kb on + strand, within MPMX20_03689 at 3888.485 kb on + strand at 3888.599 kb on - strand at 3888.691 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 3,887,709 - MPMX20_03688 0.38 +0.3 3,887,735 - MPMX20_03688 0.43 -2.9 3,887,766 - MPMX20_03688 0.48 +0.3 3,887,826 + MPMX20_03688 0.59 -2.2 3,887,826 + MPMX20_03688 0.59 -0.1 3,887,849 + MPMX20_03688 0.63 -0.4 3,887,874 - MPMX20_03688 0.68 +3.0 3,887,923 - MPMX20_03688 0.76 +0.3 3,887,993 + MPMX20_03688 0.89 -2.8 3,887,993 - MPMX20_03688 0.89 -1.0 3,888,003 - -0.0 3,888,035 - -0.9 3,888,042 - -0.1 3,888,092 - MPMX20_03689 0.10 +1.4 3,888,130 - MPMX20_03689 0.18 +0.7 3,888,141 + MPMX20_03689 0.21 -2.3 3,888,246 + MPMX20_03689 0.43 +1.0 3,888,246 + MPMX20_03689 0.43 -0.3 3,888,266 - MPMX20_03689 0.48 -3.1 3,888,266 - MPMX20_03689 0.48 +0.3 3,888,285 + MPMX20_03689 0.52 -1.4 3,888,293 - MPMX20_03689 0.53 +1.5 3,888,293 - MPMX20_03689 0.53 -0.9 3,888,293 - MPMX20_03689 0.53 +0.5 3,888,320 + MPMX20_03689 0.59 +1.2 3,888,325 + MPMX20_03689 0.60 -1.1 3,888,333 - MPMX20_03689 0.62 -0.9 3,888,367 + MPMX20_03689 0.69 -2.6 3,888,385 - MPMX20_03689 0.73 +0.8 3,888,431 + MPMX20_03689 0.83 -1.3 3,888,485 + +0.6 3,888,599 - -2.0 3,888,691 + -1.1
Or see this region's nucleotide sequence