Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02444

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
2,579,375	+		MPMX20_02443	0.21	+2.8
2,579,458	+		MPMX20_02443	0.29	+1.0
2,579,526	-		MPMX20_02443	0.36	+1.3
2,579,575	-		MPMX20_02443	0.41	-1.6
2,579,640	-		MPMX20_02443	0.48	+1.2
2,579,748	+		MPMX20_02443	0.59	+0.9
2,579,814	-		MPMX20_02443	0.65	+1.4
2,579,855	-		MPMX20_02443	0.70	+1.0
2,579,859	+		MPMX20_02443	0.70	-2.2
2,579,867	-		MPMX20_02443	0.71	-0.4
2,579,876	+		MPMX20_02443	0.72	-0.9
2,579,896	-		MPMX20_02443	0.74	+0.1
2,579,914	+		MPMX20_02443	0.76	+1.2
2,579,914	+		MPMX20_02443	0.76	+0.0
2,579,914	+		MPMX20_02443	0.76	-1.6
2,579,922	-		MPMX20_02443	0.76	-3.8
2,579,931	+		MPMX20_02443	0.77	+1.0
2,579,999	-		MPMX20_02443	0.84	-3.0
2,579,999	-		MPMX20_02443	0.84	-0.2
2,580,001	+		MPMX20_02443	0.84	+1.5
2,580,009	-		MPMX20_02443	0.85	+0.2
2,580,010	+		MPMX20_02443	0.85	-2.4
2,580,023	-		MPMX20_02443	0.87	-2.2
2,580,123	+				+1.8
2,580,132	-				+0.0
2,580,132	-				-0.5
2,580,146	-				-1.9
2,580,146	-				+0.5
2,580,157	+				+1.2
2,580,187	+				-0.5
2,580,200	-				+0.2
2,580,282	+				-2.0
2,580,311	+				+1.8
2,580,316	+				+0.3
2,580,324	-				-1.9
2,580,351	-				-0.4
2,580,374	-				-1.5
2,580,397	+				-0.7
2,580,441	+				+1.2
2,580,470	-		MPMX20_02444	0.10	-0.1
2,580,493	-		MPMX20_02444	0.12	-0.6
2,580,553	+		MPMX20_02444	0.17	+0.1
2,580,553	+		MPMX20_02444	0.17	+0.2
2,580,553	+		MPMX20_02444	0.17	-1.6
2,580,553	+		MPMX20_02444	0.17	-1.5
2,580,553	+		MPMX20_02444	0.17	+1.4
2,580,556	-		MPMX20_02444	0.18	-0.9
2,580,561	-		MPMX20_02444	0.18	-0.1
2,580,561	-		MPMX20_02444	0.18	-0.2
2,580,561	-		MPMX20_02444	0.18	-0.5
2,580,561	-		MPMX20_02444	0.18	+1.1
2,580,561	-		MPMX20_02444	0.18	-0.6
2,580,561	-		MPMX20_02444	0.18	-0.2
2,580,562	+		MPMX20_02444	0.18	-3.3
2,580,688	+		MPMX20_02444	0.29	-2.0
2,580,688	+		MPMX20_02444	0.29	+0.7
2,580,688	+		MPMX20_02444	0.29	-0.9
2,580,706	-		MPMX20_02444	0.31	+1.1
2,580,711	-		MPMX20_02444	0.31	+1.1
2,580,712	-		MPMX20_02444	0.31	+0.4
2,580,712	-		MPMX20_02444	0.31	-0.4
2,580,738	-		MPMX20_02444	0.33	+2.8
2,580,754	+		MPMX20_02444	0.35	-0.5
2,580,819	+		MPMX20_02444	0.40	-2.6
2,580,858	+		MPMX20_02444	0.44	+0.5
2,580,897	-		MPMX20_02444	0.47	+0.4
2,580,928	-		MPMX20_02444	0.50	+0.1
2,580,928	-		MPMX20_02444	0.50	-2.3
2,580,940	-		MPMX20_02444	0.51	-0.6
2,580,967	+		MPMX20_02444	0.53	-0.4
2,580,970	+		MPMX20_02444	0.53	+0.0
2,580,975	-		MPMX20_02444	0.54	-0.9
2,580,983	-		MPMX20_02444	0.55	-3.7
2,580,983	-		MPMX20_02444	0.55	+1.0
2,580,991	+		MPMX20_02444	0.55	+1.0
2,580,993	-		MPMX20_02444	0.55	+0.5
2,580,999	-		MPMX20_02444	0.56	+0.4
2,581,011	-		MPMX20_02444	0.57	-0.4
2,581,012	+		MPMX20_02444	0.57	+0.7
2,581,050	+		MPMX20_02444	0.60	+0.5
2,581,055	+		MPMX20_02444	0.61	+0.0
2,581,062	+		MPMX20_02444	0.61	+1.0
2,581,063	-		MPMX20_02444	0.62	+0.7
2,581,063	-		MPMX20_02444	0.62	-3.3
2,581,065	+		MPMX20_02444	0.62	-2.9
2,581,072	+		MPMX20_02444	0.62	-0.3
2,581,102	+		MPMX20_02444	0.65	-4.2
2,581,108	+		MPMX20_02444	0.65	-0.7
2,581,143	+		MPMX20_02444	0.68	+0.3
2,581,149	+		MPMX20_02444	0.69	-0.6
2,581,149	+		MPMX20_02444	0.69	+0.1
2,581,149	+		MPMX20_02444	0.69	-0.7
2,581,149	+		MPMX20_02444	0.69	+0.2
2,581,157	-		MPMX20_02444	0.70	-1.4
2,581,158	+		MPMX20_02444	0.70	-1.6
2,581,171	+		MPMX20_02444	0.71	-1.7
2,581,171	+		MPMX20_02444	0.71	+0.3
2,581,171	+		MPMX20_02444	0.71	-0.2
2,581,171	+		MPMX20_02444	0.71	-2.6
2,581,192	+		MPMX20_02444	0.73	+1.4
2,581,193	-		MPMX20_02444	0.73	-1.3
2,581,193	-		MPMX20_02444	0.73	-0.5
2,581,201	+		MPMX20_02444	0.74	-3.6
2,581,212	+		MPMX20_02444	0.74	+0.4
2,581,235	+		MPMX20_02444	0.76	+0.5
2,581,235	+		MPMX20_02444	0.76	-2.1
2,581,256	+		MPMX20_02444	0.78	-2.9
2,581,256	+		MPMX20_02444	0.78	-0.3
2,581,267	+		MPMX20_02444	0.79	-3.3
2,581,271	+		MPMX20_02444	0.80	+2.8
2,581,271	+		MPMX20_02444	0.80	-2.2
2,581,271	+		MPMX20_02444	0.80	+0.1
2,581,271	+		MPMX20_02444	0.80	-2.4
2,581,271	+		MPMX20_02444	0.80	+2.6
2,581,271	+		MPMX20_02444	0.80	+0.0
2,581,271	+		MPMX20_02444	0.80	-1.7
2,581,277	+		MPMX20_02444	0.80	-0.2
2,581,278	+		MPMX20_02444	0.80	+0.6
2,581,279	-		MPMX20_02444	0.80	+1.0
2,581,281	+		MPMX20_02444	0.80	-1.6
2,581,293	-		MPMX20_02444	0.82	-1.0
2,581,295	+		MPMX20_02444	0.82	-0.9
2,581,315	+		MPMX20_02444	0.83	-0.7
2,581,315	+		MPMX20_02444	0.83	-1.6
2,581,315	+		MPMX20_02444	0.83	-1.8
2,581,315	+		MPMX20_02444	0.83	-0.3
2,581,320	+		MPMX20_02444	0.84	-1.6
2,581,328	-		MPMX20_02444	0.85	-0.6
2,581,456	+				-1.7
2,581,873	-				+0.3
2,581,875	-				-3.2
2,581,899	-				-0.9
2,581,900	-				-1.0
2,581,904	-				-2.0
2,581,913	-				-0.2
2,581,914	-				-1.5
2,581,914	-				-2.1
2,581,914	-				-1.5
2,581,914	-				+0.6
2,581,914	-				-1.4
2,581,914	-				+0.3
2,581,915	-				-2.4
2,581,923	-				+0.6
2,581,923	-				-2.6
2,581,933	-				-2.3
2,581,941	-				-2.4
2,581,941	-				+0.0
2,581,941	-				-1.5
2,581,961	-				-0.4
2,581,961	-				-0.6
2,581,966	-				+2.9
2,581,966	-				-0.7
2,581,973	-				-2.7
2,581,973	-				-0.9
2,581,973	-				-1.2
2,581,985	-				+0.0
2,581,985	-				+0.4
2,581,997	-				-1.2
2,582,004	-				-2.2
2,582,004	-				-0.9
2,582,009	-				+0.9
2,582,009	-				+0.7
2,582,009	-				-0.7
2,582,011	-				-1.1
2,582,016	-				-2.6
2,582,035	-				-1.9
2,582,043	-				-1.6
2,582,043	-				-0.9
2,582,043	-				-0.8
2,582,043	-				-2.2
2,582,043	-				-0.5
2,582,043	-				-1.5
2,582,043	-				-2.2
2,582,043	-				+0.4
2,582,043	-				-1.5
2,582,043	-				+0.1
2,582,043	-				-1.6
2,582,043	-				+0.6
2,582,043	-				-2.1
2,582,043	-				-0.2
2,582,043	-				+1.1
2,582,043	-				+0.2
2,582,043	-				-2.0
2,582,043	-				-0.4
2,582,043	-				-0.7
2,582,043	-				+0.6
2,582,043	-				+0.0
2,582,043	-				+1.4
2,582,043	-				+0.2
2,582,043	-				-1.2
2,582,043	-				+1.5
2,582,043	-				+0.8
2,582,043	-				-1.8
2,582,043	-				+1.4
2,582,043	-				+0.6
2,582,043	-				-2.4
2,582,043	-				+5.4
2,582,043	-				-2.0
2,582,043	-				-0.9
2,582,043	-				-1.9
2,582,043	-				+1.6
2,582,043	-				-0.4
2,582,043	-				-2.4
2,582,043	-				-0.4
2,582,043	-				-2.5
2,582,043	-				-2.8
2,582,043	-				+1.8
2,582,043	-				-1.0
2,582,043	-				+0.9
2,582,043	-				+1.1
2,582,043	-				-1.2
2,582,043	-				+0.3
2,582,043	-				-2.2
2,582,043	-				-0.2
2,582,043	-				+0.3
2,582,043	-				-2.7
2,582,043	-				-1.1
2,582,043	-				-0.4
2,582,043	-				-2.9
2,582,043	-				+1.0
2,582,043	-				+0.2
2,582,043	-				-0.4
2,582,043	-				-0.7
2,582,043	-				+1.2
2,582,043	-				+2.6
2,582,043	-				-1.9
2,582,048	-				-2.0
2,582,048	-				+0.5
2,582,048	-				-0.6
2,582,085	+				+1.6
2,582,085	-				-2.3
2,582,093	-				-0.5
2,582,093	-				+0.4
2,582,093	-				+0.3
2,582,093	-				+1.1
2,582,093	-				+3.3
2,582,093	-				-1.6
2,582,105	-				+0.3
2,582,106	-				-1.1
2,582,129	+				-1.3
2,582,137	-				-0.2
2,582,137	-				+0.6
2,582,137	-				-3.0
2,582,187	+		MPMX20_02445	0.11	-1.2
2,582,187	+		MPMX20_02445	0.11	+0.0
2,582,188	-		MPMX20_02445	0.11	-2.4
2,582,192	+		MPMX20_02445	0.11	+3.6
2,582,195	-		MPMX20_02445	0.11	+1.1
2,582,205	-		MPMX20_02445	0.11	-1.8
2,582,205	-		MPMX20_02445	0.11	+1.0
2,582,224	-		MPMX20_02445	0.12	+2.8
2,582,268	-		MPMX20_02445	0.14	-1.7
2,582,301	+		MPMX20_02445	0.16	+0.5
2,582,309	-		MPMX20_02445	0.16	-2.5
2,582,317	-		MPMX20_02445	0.17	-1.6
2,582,328	-		MPMX20_02445	0.17	-3.6
2,582,338	-		MPMX20_02445	0.18	-0.5
2,582,363	+		MPMX20_02445	0.19	-0.4
2,582,363	+		MPMX20_02445	0.19	-1.1
2,582,363	+		MPMX20_02445	0.19	-0.4
2,582,371	-		MPMX20_02445	0.19	+4.6
2,582,371	-		MPMX20_02445	0.19	-1.4
2,582,371	-		MPMX20_02445	0.19	-1.3
2,582,395	-		MPMX20_02445	0.20	+0.7