Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02005

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
2,094,119	+		MPMX20_02004	0.76	-1.2
2,094,124	+		MPMX20_02004	0.77	-2.6
2,094,127	-		MPMX20_02004	0.77	-1.6
2,094,162	+		MPMX20_02004	0.79	+0.7
2,094,170	-		MPMX20_02004	0.80	+0.4
2,094,170	-		MPMX20_02004	0.80	-2.0
2,094,180	+		MPMX20_02004	0.80	+1.1
2,094,215	-		MPMX20_02004	0.83	+0.4
2,094,249	+		MPMX20_02004	0.85	+0.4
2,094,257	+		MPMX20_02004	0.86	+1.3
2,094,262	+		MPMX20_02004	0.86	+1.5
2,094,265	-		MPMX20_02004	0.86	+1.7
2,094,283	+		MPMX20_02004	0.87	-0.5
2,094,288	+		MPMX20_02004	0.88	+0.4
2,094,296	-		MPMX20_02004	0.88	-0.5
2,094,316	-		MPMX20_02004	0.89	-0.4
2,094,415	-				-1.2
2,094,433	-				-1.3
2,094,434	-				-0.5
2,094,434	-				+0.6
2,094,434	-				-2.9
2,094,434	-				-0.5
2,094,435	-				+0.7
2,094,440	-				+0.4
2,094,452	+				-3.2
2,094,452	+				+0.1
2,094,460	-				-2.1
2,094,535	-				-2.8
2,094,535	-				-1.0
2,094,536	-				+0.0
2,094,549	-				-1.9
2,094,580	-				+1.3
2,094,581	+				-1.8
2,094,586	+				-0.9
2,094,586	+				+0.7
2,094,586	+				-0.0
2,094,586	+				-1.4
2,094,586	+				-2.1
2,094,586	+				-3.1
2,094,586	+				-2.7
2,094,586	+				-1.4
2,094,586	+				-1.4
2,094,594	-				+0.5
2,094,594	-				-2.3
2,094,594	-				-0.6
2,094,594	-				-0.9
2,094,594	-				+1.5
2,094,594	-				-0.3
2,094,594	-				+0.8
2,094,594	-				-1.8
2,094,594	-				-0.1
2,094,594	-				+0.3
2,094,594	-				+0.5
2,094,594	-				-2.7
2,094,594	-				+1.0
2,094,594	-				+0.2
2,094,594	-				-0.3
2,094,594	-				+0.1
2,094,594	-				-2.7
2,094,594	-				-2.1
2,094,594	-				+1.1
2,094,625	+				+7.8
2,094,663	+				+0.2
2,094,805	+				-1.1
2,094,805	+				-0.2
2,094,828	+				+1.2
2,094,836	-				+2.2
2,094,837	-				+1.8
2,094,837	-				-2.0
2,094,850	+				-0.8
2,094,903	-				+0.7
2,095,103	-				-2.8
2,095,119	+				-1.9
2,095,264	+		MPMX20_02005	0.27	+3.4
2,095,264	+		MPMX20_02005	0.27	-2.1
2,095,264	+		MPMX20_02005	0.27	+0.1
2,095,287	-		MPMX20_02005	0.31	+0.5
2,095,343	-		MPMX20_02005	0.39	+1.2
2,095,345	+		MPMX20_02005	0.40	-1.7
2,095,345	+		MPMX20_02005	0.40	+0.3
2,095,353	-		MPMX20_02005	0.41	-0.3
2,095,355	-		MPMX20_02005	0.41	+0.1
2,095,383	+		MPMX20_02005	0.46	+0.7
2,095,398	-		MPMX20_02005	0.48	+0.1
2,095,471	+		MPMX20_02005	0.60	+0.5
2,095,549	-		MPMX20_02005	0.72	-0.8
2,095,561	+		MPMX20_02005	0.74	-1.9
2,095,569	-		MPMX20_02005	0.75	+1.5
2,095,569	-		MPMX20_02005	0.75	+3.3
2,095,653	+		MPMX20_02005	0.88	-1.6
2,095,703	-				-1.1
2,095,703	-				-0.3
2,095,758	-				+1.3
2,095,768	-				-1.0
2,095,826	-		MPMX20_02006	0.15	-1.9
2,095,911	+		MPMX20_02006	0.27	+0.4
2,095,911	+		MPMX20_02006	0.27	-2.1
2,096,021	+		MPMX20_02006	0.43	-0.3
2,096,077	+		MPMX20_02006	0.51	-0.8
2,096,077	+		MPMX20_02006	0.51	-1.5
2,096,080	+		MPMX20_02006	0.52	+0.6
2,096,153	-		MPMX20_02006	0.62	-2.0
2,096,231	+		MPMX20_02006	0.74	-1.0
2,096,236	+		MPMX20_02006	0.75	-1.9
2,096,236	+		MPMX20_02006	0.75	-1.0
2,096,262	+		MPMX20_02006	0.78	+1.7
2,096,293	-		MPMX20_02006	0.83	-0.8
2,096,293	-		MPMX20_02006	0.83	+1.2
2,096,425	+				-2.0
2,096,505	+		MPMX20_02007	0.15	-1.7
2,096,513	-		MPMX20_02007	0.16	+0.5
2,096,519	+		MPMX20_02007	0.17	-1.5
2,096,537	-		MPMX20_02007	0.20	+0.4
2,096,617	+		MPMX20_02007	0.33	-1.3
2,096,664	-		MPMX20_02007	0.40	+0.7
2,096,683	-		MPMX20_02007	0.43	+3.1
2,096,698	-		MPMX20_02007	0.46	+0.7
2,096,727	+		MPMX20_02007	0.51	+2.4