Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01839

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01836 and MPMX20_01837 are separated by 145 nucleotidesMPMX20_01837 and MPMX20_01838 are separated by 20 nucleotidesMPMX20_01838 and MPMX20_01839 are separated by 114 nucleotidesMPMX20_01839 and MPMX20_01840 are separated by 27 nucleotides MPMX20_01836: MPMX20_01836 - hypothetical protein, at 1,930,072 to 1,930,518 _01836 MPMX20_01837: MPMX20_01837 - hypothetical protein, at 1,930,664 to 1,930,768 _01837 MPMX20_01838: MPMX20_01838 - hypothetical protein, at 1,930,789 to 1,931,289 _01838 MPMX20_01839: MPMX20_01839 - hypothetical protein, at 1,931,404 to 1,932,759 _01839 MPMX20_01840: MPMX20_01840 - hypothetical protein, at 1,932,787 to 1,934,721 _01840 Position (kb) 1931 1932 1933Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1930.405 kb on - strand, within MPMX20_01836at 1930.498 kb on + strandat 1930.522 kb on - strandat 1930.537 kb on + strandat 1930.545 kb on - strandat 1930.590 kb on + strandat 1930.602 kb on + strandat 1930.602 kb on + strandat 1930.691 kb on + strand, within MPMX20_01837at 1930.722 kb on + strand, within MPMX20_01837at 1930.730 kb on - strand, within MPMX20_01837at 1930.730 kb on - strand, within MPMX20_01837at 1930.777 kb on - strandat 1930.812 kb on + strandat 1930.820 kb on - strandat 1930.915 kb on - strand, within MPMX20_01838at 1931.027 kb on - strand, within MPMX20_01838at 1931.057 kb on - strand, within MPMX20_01838at 1931.119 kb on - strand, within MPMX20_01838at 1931.120 kb on + strand, within MPMX20_01838at 1931.141 kb on - strand, within MPMX20_01838at 1931.141 kb on - strand, within MPMX20_01838at 1931.227 kb on + strand, within MPMX20_01838at 1931.235 kb on - strand, within MPMX20_01838at 1931.250 kb on - strandat 1931.270 kb on + strandat 1931.285 kb on - strandat 1931.340 kb on + strandat 1931.416 kb on - strandat 1931.441 kb on + strandat 1931.461 kb on - strandat 1931.482 kb on - strandat 1931.525 kb on - strandat 1931.549 kb on - strand, within MPMX20_01839at 1931.620 kb on - strand, within MPMX20_01839at 1931.666 kb on + strand, within MPMX20_01839at 1931.666 kb on + strand, within MPMX20_01839at 1931.672 kb on + strand, within MPMX20_01839at 1931.672 kb on + strand, within MPMX20_01839at 1931.672 kb on + strand, within MPMX20_01839at 1931.698 kb on + strand, within MPMX20_01839at 1931.707 kb on - strand, within MPMX20_01839at 1931.721 kb on + strand, within MPMX20_01839at 1931.739 kb on - strand, within MPMX20_01839at 1931.747 kb on - strand, within MPMX20_01839at 1931.822 kb on + strand, within MPMX20_01839at 1931.833 kb on + strand, within MPMX20_01839at 1931.855 kb on + strand, within MPMX20_01839at 1931.856 kb on + strand, within MPMX20_01839at 1931.882 kb on + strand, within MPMX20_01839at 1931.882 kb on + strand, within MPMX20_01839at 1931.890 kb on - strand, within MPMX20_01839at 1931.890 kb on - strand, within MPMX20_01839at 1931.896 kb on + strand, within MPMX20_01839at 1931.932 kb on + strand, within MPMX20_01839at 1931.940 kb on - strand, within MPMX20_01839at 1931.947 kb on + strand, within MPMX20_01839at 1931.988 kb on + strand, within MPMX20_01839at 1931.988 kb on + strand, within MPMX20_01839at 1931.988 kb on + strand, within MPMX20_01839at 1931.988 kb on + strand, within MPMX20_01839at 1931.988 kb on + strand, within MPMX20_01839at 1931.996 kb on - strand, within MPMX20_01839at 1931.996 kb on - strand, within MPMX20_01839at 1932.016 kb on + strand, within MPMX20_01839at 1932.070 kb on - strand, within MPMX20_01839at 1932.098 kb on + strand, within MPMX20_01839at 1932.106 kb on - strand, within MPMX20_01839at 1932.110 kb on + strand, within MPMX20_01839at 1932.141 kb on - strand, within MPMX20_01839at 1932.172 kb on + strand, within MPMX20_01839at 1932.191 kb on + strand, within MPMX20_01839at 1932.191 kb on + strand, within MPMX20_01839at 1932.228 kb on - strand, within MPMX20_01839at 1932.239 kb on + strand, within MPMX20_01839at 1932.354 kb on + strand, within MPMX20_01839at 1932.380 kb on + strand, within MPMX20_01839at 1932.382 kb on - strand, within MPMX20_01839at 1932.466 kb on - strand, within MPMX20_01839at 1932.511 kb on + strand, within MPMX20_01839at 1932.672 kb on + strandat 1932.693 kb on - strandat 1932.694 kb on + strandat 1932.721 kb on + strandat 1932.729 kb on - strandat 1932.729 kb on - strandat 1932.729 kb on - strandat 1933.118 kb on + strand, within MPMX20_01840at 1933.249 kb on - strand, within MPMX20_01840at 1933.256 kb on + strand, within MPMX20_01840at 1933.312 kb on - strand, within MPMX20_01840at 1933.333 kb on - strand, within MPMX20_01840at 1933.416 kb on + strand, within MPMX20_01840at 1933.421 kb on + strand, within MPMX20_01840at 1933.458 kb on - strand, within MPMX20_01840at 1933.477 kb on - strand, within MPMX20_01840at 1933.479 kb on - strand, within MPMX20_01840at 1933.507 kb on + strand, within MPMX20_01840at 1933.509 kb on + strand, within MPMX20_01840at 1933.632 kb on - strand, within MPMX20_01840at 1933.635 kb on + strand, within MPMX20_01840at 1933.661 kb on - strand, within MPMX20_01840at 1933.710 kb on + strand, within MPMX20_01840at 1933.710 kb on + strand, within MPMX20_01840at 1933.710 kb on + strand, within MPMX20_01840at 1933.718 kb on - strand, within MPMX20_01840at 1933.718 kb on - strand, within MPMX20_01840at 1933.718 kb on - strand, within MPMX20_01840

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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1,930,405 - MPMX20_01836 0.74 +0.5
1,930,498 + +1.9
1,930,522 - -0.5
1,930,537 + +0.2
1,930,545 - -0.3
1,930,590 + +0.6
1,930,602 + -3.1
1,930,602 + +0.7
1,930,691 + MPMX20_01837 0.26 +2.3
1,930,722 + MPMX20_01837 0.55 +0.6
1,930,730 - MPMX20_01837 0.63 -1.5
1,930,730 - MPMX20_01837 0.63 -0.4
1,930,777 - +1.1
1,930,812 + -2.5
1,930,820 - -0.8
1,930,915 - MPMX20_01838 0.25 -1.3
1,931,027 - MPMX20_01838 0.48 -0.9
1,931,057 - MPMX20_01838 0.53 +1.5
1,931,119 - MPMX20_01838 0.66 -1.2
1,931,120 + MPMX20_01838 0.66 -1.7
1,931,141 - MPMX20_01838 0.70 -0.6
1,931,141 - MPMX20_01838 0.70 +1.3
1,931,227 + MPMX20_01838 0.87 +1.0
1,931,235 - MPMX20_01838 0.89 +0.0
1,931,250 - +1.5
1,931,270 + -1.3
1,931,285 - -1.0
1,931,340 + +1.2
1,931,416 - +1.4
1,931,441 + +0.8
1,931,461 - +3.2
1,931,482 - +1.1
1,931,525 - +2.2
1,931,549 - MPMX20_01839 0.11 +3.6
1,931,620 - MPMX20_01839 0.16 +6.3
1,931,666 + MPMX20_01839 0.19 +2.2
1,931,666 + MPMX20_01839 0.19 +3.1
1,931,672 + MPMX20_01839 0.20 +5.3
1,931,672 + MPMX20_01839 0.20 +4.6
1,931,672 + MPMX20_01839 0.20 +1.6
1,931,698 + MPMX20_01839 0.22 +3.5
1,931,707 - MPMX20_01839 0.22 +2.3
1,931,721 + MPMX20_01839 0.23 -0.1
1,931,739 - MPMX20_01839 0.25 +4.9
1,931,747 - MPMX20_01839 0.25 +4.9
1,931,822 + MPMX20_01839 0.31 +1.1
1,931,833 + MPMX20_01839 0.32 +0.9
1,931,855 + MPMX20_01839 0.33 -0.3
1,931,856 + MPMX20_01839 0.33 +3.1
1,931,882 + MPMX20_01839 0.35 +3.3
1,931,882 + MPMX20_01839 0.35 -0.3
1,931,890 - MPMX20_01839 0.36 +2.9
1,931,890 - MPMX20_01839 0.36 +1.1
1,931,896 + MPMX20_01839 0.36 +5.2
1,931,932 + MPMX20_01839 0.39 +1.7
1,931,940 - MPMX20_01839 0.40 +2.7
1,931,947 + MPMX20_01839 0.40 +5.1
1,931,988 + MPMX20_01839 0.43 +6.1
1,931,988 + MPMX20_01839 0.43 +2.6
1,931,988 + MPMX20_01839 0.43 +3.8
1,931,988 + MPMX20_01839 0.43 -0.3
1,931,988 + MPMX20_01839 0.43 +5.2
1,931,996 - MPMX20_01839 0.44 +3.5
1,931,996 - MPMX20_01839 0.44 -0.9
1,932,016 + MPMX20_01839 0.45 -1.4
1,932,070 - MPMX20_01839 0.49 +3.9
1,932,098 + MPMX20_01839 0.51 +3.1
1,932,106 - MPMX20_01839 0.52 -0.1
1,932,110 + MPMX20_01839 0.52 +3.3
1,932,141 - MPMX20_01839 0.54 +3.5
1,932,172 + MPMX20_01839 0.57 +2.2
1,932,191 + MPMX20_01839 0.58 +1.9
1,932,191 + MPMX20_01839 0.58 +2.1
1,932,228 - MPMX20_01839 0.61 +2.0
1,932,239 + MPMX20_01839 0.62 +3.4
1,932,354 + MPMX20_01839 0.70 +0.4
1,932,380 + MPMX20_01839 0.72 -0.3
1,932,382 - MPMX20_01839 0.72 +2.4
1,932,466 - MPMX20_01839 0.78 +3.4
1,932,511 + MPMX20_01839 0.82 +2.9
1,932,672 + +4.0
1,932,693 - -2.1
1,932,694 + +2.7
1,932,721 + +2.8
1,932,729 - +1.6
1,932,729 - -0.6
1,932,729 - +0.0
1,933,118 + MPMX20_01840 0.17 +1.3
1,933,249 - MPMX20_01840 0.24 +3.4
1,933,256 + MPMX20_01840 0.24 +6.4
1,933,312 - MPMX20_01840 0.27 +3.1
1,933,333 - MPMX20_01840 0.28 +2.7
1,933,416 + MPMX20_01840 0.33 +0.7
1,933,421 + MPMX20_01840 0.33 +4.6
1,933,458 - MPMX20_01840 0.35 +3.4
1,933,477 - MPMX20_01840 0.36 +4.0
1,933,479 - MPMX20_01840 0.36 +2.4
1,933,507 + MPMX20_01840 0.37 +2.4
1,933,509 + MPMX20_01840 0.37 +2.9
1,933,632 - MPMX20_01840 0.44 +3.0
1,933,635 + MPMX20_01840 0.44 +3.1
1,933,661 - MPMX20_01840 0.45 +3.2
1,933,710 + MPMX20_01840 0.48 +5.9
1,933,710 + MPMX20_01840 0.48 +3.9
1,933,710 + MPMX20_01840 0.48 +4.2
1,933,718 - MPMX20_01840 0.48 -0.1
1,933,718 - MPMX20_01840 0.48 +2.9
1,933,718 - MPMX20_01840 0.48 +1.3

Or see this region's nucleotide sequence