Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01321

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
1,377,033	+		MPMX20_01320	0.56	-2.4
1,377,033	+		MPMX20_01320	0.56	-1.6
1,377,060	+		MPMX20_01320	0.58	+0.7
1,377,078	+		MPMX20_01320	0.59	+2.2
1,377,148	+		MPMX20_01320	0.63	-1.3
1,377,156	-		MPMX20_01320	0.64	+1.0
1,377,156	-		MPMX20_01320	0.64	-0.3
1,377,178	-		MPMX20_01320	0.65	+0.0
1,377,214	-		MPMX20_01320	0.67	-3.0
1,377,238	-		MPMX20_01320	0.69	-0.7
1,377,240	+		MPMX20_01320	0.69	+1.7
1,377,240	+		MPMX20_01320	0.69	-2.3
1,377,240	+		MPMX20_01320	0.69	-0.3
1,377,248	-		MPMX20_01320	0.69	-2.8
1,377,314	+		MPMX20_01320	0.73	+4.2
1,377,314	+		MPMX20_01320	0.73	-1.9
1,377,314	+		MPMX20_01320	0.73	+0.6
1,377,322	-		MPMX20_01320	0.74	+0.8
1,377,322	-		MPMX20_01320	0.74	+0.8
1,377,322	-		MPMX20_01320	0.74	+4.3
1,377,322	-		MPMX20_01320	0.74	+1.7
1,377,376	+		MPMX20_01320	0.77	-1.1
1,377,376	+		MPMX20_01320	0.77	-1.8
1,377,391	+		MPMX20_01320	0.78	+1.2
1,377,403	-		MPMX20_01320	0.79	-0.1
1,377,471	-		MPMX20_01320	0.83	-2.3
1,377,472	+		MPMX20_01320	0.83	+0.6
1,377,600	-				-0.1
1,377,618	-				+1.8
1,377,648	-				-0.5
1,377,661	-				+1.3
1,377,701	+				+2.4
1,377,711	+				+1.4
1,377,755	+				-0.1
1,377,768	+				-0.1
1,377,768	+				+2.8
1,377,768	+				-0.9
1,377,776	-				-0.8
1,378,001	-				+0.6
1,378,084	+				-1.3
1,378,114	+		MPMX20_01321	0.14	-1.5
1,378,140	+		MPMX20_01321	0.17	-2.1
1,378,140	+		MPMX20_01321	0.17	+0.5
1,378,192	-		MPMX20_01321	0.24	-0.4
1,378,201	+		MPMX20_01321	0.25	+1.7
1,378,227	+		MPMX20_01321	0.29	-1.6
1,378,235	-		MPMX20_01321	0.30	-1.8
1,378,285	-		MPMX20_01321	0.37	+3.9
1,378,393	+		MPMX20_01321	0.51	+0.6
1,378,400	-		MPMX20_01321	0.52	-1.7
1,378,400	-		MPMX20_01321	0.52	+0.1
1,378,400	-		MPMX20_01321	0.52	-0.7
1,378,460	-		MPMX20_01321	0.60	-1.9
1,378,465	-		MPMX20_01321	0.61	-1.4
1,378,492	-		MPMX20_01321	0.64	+0.9
1,378,492	-		MPMX20_01321	0.64	+0.8
1,378,492	-		MPMX20_01321	0.64	+1.2
1,378,530	+		MPMX20_01321	0.69	+1.1
1,378,530	+		MPMX20_01321	0.69	-0.2
1,378,540	+		MPMX20_01321	0.71	+0.3
1,378,609	+		MPMX20_01321	0.80	+1.7
1,378,609	+		MPMX20_01321	0.80	-1.2
1,378,616	-		MPMX20_01321	0.81	+1.7
1,378,617	-		MPMX20_01321	0.81	+2.9
1,378,617	-		MPMX20_01321	0.81	+2.2
1,378,617	-		MPMX20_01321	0.81	+1.0
1,378,617	-		MPMX20_01321	0.81	-0.6
1,378,693	+				+0.4
1,378,693	+				-3.0
1,378,757	+				-0.3
1,378,757	+				+0.0
1,378,802	+				-0.7
1,378,861	-				-1.1
1,378,871	-				+1.7
1,378,881	-				-1.6
1,378,890	+				-2.0
1,378,957	+		MPMX20_01322	0.12	-3.1
1,378,957	+		MPMX20_01322	0.12	-0.3
1,378,967	-		MPMX20_01322	0.13	-0.3
1,379,062	-		MPMX20_01322	0.21	-1.8
1,379,072	-		MPMX20_01322	0.22	-2.2
1,379,095	+		MPMX20_01322	0.24	-1.3
1,379,164	+		MPMX20_01322	0.29	+0.4
1,379,169	+		MPMX20_01322	0.30	+0.4
1,379,176	-		MPMX20_01322	0.30	-1.8
1,379,202	+		MPMX20_01322	0.32	-1.6
1,379,229	+		MPMX20_01322	0.35	+0.4
1,379,287	-		MPMX20_01322	0.39	-2.8
1,379,342	-		MPMX20_01322	0.44	-0.8
1,379,352	+		MPMX20_01322	0.45	-2.5
1,379,360	-		MPMX20_01322	0.45	-2.4
1,379,365	-		MPMX20_01322	0.46	-2.8
1,379,365	-		MPMX20_01322	0.46	+1.7
1,379,395	+		MPMX20_01322	0.48	+1.1
1,379,403	-		MPMX20_01322	0.49	-2.3
1,379,427	+		MPMX20_01322	0.51	-2.8
1,379,451	-		MPMX20_01322	0.53	-2.5
1,379,474	-		MPMX20_01322	0.55	-2.0
1,379,486	+		MPMX20_01322	0.56	-1.8
1,379,486	+		MPMX20_01322	0.56	+0.4
1,379,496	+		MPMX20_01322	0.56	+0.1
1,379,503	+		MPMX20_01322	0.57	+1.7
1,379,562	-		MPMX20_01322	0.62	-1.6
1,379,625	+		MPMX20_01322	0.67	+1.1
1,379,633	+		MPMX20_01322	0.68	-0.5
1,379,633	+		MPMX20_01322	0.68	-1.8
1,379,637	+		MPMX20_01322	0.68	+1.7
1,379,641	-		MPMX20_01322	0.68	-0.9
1,379,641	-		MPMX20_01322	0.68	-0.3
1,379,710	+		MPMX20_01322	0.74	-1.0
1,379,724	+		MPMX20_01322	0.75	-3.0
1,379,724	+		MPMX20_01322	0.75	-1.6
1,379,724	+		MPMX20_01322	0.75	-1.4
1,379,724	+		MPMX20_01322	0.75	-0.3
1,379,746	+		MPMX20_01322	0.77	-1.0