Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01266

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01264 and MPMX20_01265 are separated by 43 nucleotidesMPMX20_01265 and MPMX20_01266 are separated by 40 nucleotidesMPMX20_01266 and MPMX20_01267 overlap by 4 nucleotidesMPMX20_01267 and MPMX20_01268 overlap by 4 nucleotides MPMX20_01264: MPMX20_01264 - Methylthioribose-1-phosphate isomerase, at 1,329,124 to 1,330,140 _01264 MPMX20_01265: MPMX20_01265 - hypothetical protein, at 1,330,184 to 1,330,654 _01265 MPMX20_01266: MPMX20_01266 - Acireductone dioxygenase, at 1,330,695 to 1,331,237 _01266 MPMX20_01267: MPMX20_01267 - Enolase-phosphatase E1, at 1,331,234 to 1,331,923 _01267 MPMX20_01268: MPMX20_01268 - Methylthioribulose-1-phosphate dehydratase, at 1,331,920 to 1,332,534 _01268 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1329.755 kb on + strand, within MPMX20_01264at 1329.790 kb on + strand, within MPMX20_01264at 1329.790 kb on + strand, within MPMX20_01264at 1329.790 kb on + strand, within MPMX20_01264at 1329.891 kb on - strand, within MPMX20_01264at 1329.950 kb on + strand, within MPMX20_01264at 1329.988 kb on + strand, within MPMX20_01264at 1330.006 kb on + strand, within MPMX20_01264at 1330.014 kb on - strand, within MPMX20_01264at 1330.015 kb on - strand, within MPMX20_01264at 1330.032 kb on + strand, within MPMX20_01264at 1330.032 kb on + strand, within MPMX20_01264at 1330.074 kb on - strandat 1330.144 kb on + strandat 1330.159 kb on - strandat 1330.266 kb on + strand, within MPMX20_01265at 1330.266 kb on + strand, within MPMX20_01265at 1330.317 kb on + strand, within MPMX20_01265at 1330.325 kb on - strand, within MPMX20_01265at 1330.348 kb on + strand, within MPMX20_01265at 1330.360 kb on + strand, within MPMX20_01265at 1330.360 kb on + strand, within MPMX20_01265at 1330.360 kb on + strand, within MPMX20_01265at 1330.360 kb on + strand, within MPMX20_01265at 1330.368 kb on - strand, within MPMX20_01265at 1330.368 kb on - strand, within MPMX20_01265at 1330.462 kb on - strand, within MPMX20_01265at 1330.496 kb on + strand, within MPMX20_01265at 1330.514 kb on - strand, within MPMX20_01265at 1330.514 kb on - strand, within MPMX20_01265at 1330.514 kb on - strand, within MPMX20_01265at 1330.598 kb on + strand, within MPMX20_01265at 1330.598 kb on + strand, within MPMX20_01265at 1330.618 kb on - strandat 1330.621 kb on + strandat 1330.621 kb on + strandat 1330.732 kb on + strandat 1330.732 kb on + strandat 1330.732 kb on + strandat 1330.788 kb on + strand, within MPMX20_01266at 1330.805 kb on + strand, within MPMX20_01266at 1330.813 kb on - strand, within MPMX20_01266at 1330.872 kb on - strand, within MPMX20_01266at 1330.891 kb on + strand, within MPMX20_01266at 1331.148 kb on - strand, within MPMX20_01266at 1331.182 kb on - strand, within MPMX20_01266at 1331.200 kb on - strandat 1331.243 kb on - strandat 1331.248 kb on + strandat 1331.261 kb on - strandat 1331.272 kb on + strandat 1331.277 kb on + strandat 1331.281 kb on + strandat 1331.320 kb on + strand, within MPMX20_01267at 1331.328 kb on - strand, within MPMX20_01267at 1331.344 kb on + strand, within MPMX20_01267at 1331.344 kb on + strand, within MPMX20_01267at 1331.423 kb on + strand, within MPMX20_01267at 1331.431 kb on - strand, within MPMX20_01267at 1331.480 kb on + strand, within MPMX20_01267at 1331.488 kb on - strand, within MPMX20_01267at 1331.535 kb on + strand, within MPMX20_01267at 1331.537 kb on + strand, within MPMX20_01267at 1331.537 kb on + strand, within MPMX20_01267at 1331.570 kb on + strand, within MPMX20_01267at 1331.571 kb on - strand, within MPMX20_01267at 1331.610 kb on + strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.618 kb on - strand, within MPMX20_01267at 1331.674 kb on + strand, within MPMX20_01267at 1331.682 kb on - strand, within MPMX20_01267at 1331.704 kb on - strand, within MPMX20_01267at 1331.711 kb on + strand, within MPMX20_01267at 1331.717 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.719 kb on - strand, within MPMX20_01267at 1331.742 kb on - strand, within MPMX20_01267at 1331.753 kb on - strand, within MPMX20_01267at 1331.785 kb on - strand, within MPMX20_01267at 1331.802 kb on + strand, within MPMX20_01267at 1331.802 kb on + strand, within MPMX20_01267at 1331.810 kb on - strand, within MPMX20_01267at 1331.810 kb on - strand, within MPMX20_01267at 1331.825 kb on - strand, within MPMX20_01267at 1331.875 kb on + strandat 1331.919 kb on + strandat 1331.926 kb on - strandat 1331.927 kb on + strandat 1331.945 kb on - strandat 1331.945 kb on - strandat 1332.019 kb on + strand, within MPMX20_01268at 1332.024 kb on + strand, within MPMX20_01268at 1332.024 kb on + strand, within MPMX20_01268at 1332.024 kb on + strand, within MPMX20_01268at 1332.027 kb on - strand, within MPMX20_01268at 1332.032 kb on - strand, within MPMX20_01268at 1332.059 kb on + strand, within MPMX20_01268at 1332.072 kb on - strand, within MPMX20_01268at 1332.098 kb on + strand, within MPMX20_01268at 1332.126 kb on + strand, within MPMX20_01268at 1332.130 kb on - strand, within MPMX20_01268at 1332.145 kb on - strand, within MPMX20_01268at 1332.149 kb on + strand, within MPMX20_01268at 1332.150 kb on - strand, within MPMX20_01268at 1332.219 kb on + strand, within MPMX20_01268

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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1,329,755 + MPMX20_01264 0.62 +0.6
1,329,790 + MPMX20_01264 0.65 +1.5
1,329,790 + MPMX20_01264 0.65 -2.5
1,329,790 + MPMX20_01264 0.65 -0.4
1,329,891 - MPMX20_01264 0.75 +0.5
1,329,950 + MPMX20_01264 0.81 -2.7
1,329,988 + MPMX20_01264 0.85 +0.0
1,330,006 + MPMX20_01264 0.87 -1.0
1,330,014 - MPMX20_01264 0.88 -0.7
1,330,015 - MPMX20_01264 0.88 -0.3
1,330,032 + MPMX20_01264 0.89 -1.0
1,330,032 + MPMX20_01264 0.89 +0.7
1,330,074 - -2.0
1,330,144 + -1.1
1,330,159 - -0.6
1,330,266 + MPMX20_01265 0.17 -1.4
1,330,266 + MPMX20_01265 0.17 +1.0
1,330,317 + MPMX20_01265 0.28 -1.2
1,330,325 - MPMX20_01265 0.30 +3.9
1,330,348 + MPMX20_01265 0.35 +1.1
1,330,360 + MPMX20_01265 0.37 -0.3
1,330,360 + MPMX20_01265 0.37 -1.4
1,330,360 + MPMX20_01265 0.37 +0.7
1,330,360 + MPMX20_01265 0.37 +2.1
1,330,368 - MPMX20_01265 0.39 +1.7
1,330,368 - MPMX20_01265 0.39 +1.7
1,330,462 - MPMX20_01265 0.59 +1.2
1,330,496 + MPMX20_01265 0.66 -1.7
1,330,514 - MPMX20_01265 0.70 +0.4
1,330,514 - MPMX20_01265 0.70 +0.6
1,330,514 - MPMX20_01265 0.70 -1.0
1,330,598 + MPMX20_01265 0.88 -0.4
1,330,598 + MPMX20_01265 0.88 +1.7
1,330,618 - -0.3
1,330,621 + +2.1
1,330,621 + -1.1
1,330,732 + +0.7
1,330,732 + +0.4
1,330,732 + -0.6
1,330,788 + MPMX20_01266 0.17 +1.7
1,330,805 + MPMX20_01266 0.20 -1.5
1,330,813 - MPMX20_01266 0.22 -1.6
1,330,872 - MPMX20_01266 0.33 -0.7
1,330,891 + MPMX20_01266 0.36 +4.3
1,331,148 - MPMX20_01266 0.83 -1.4
1,331,182 - MPMX20_01266 0.90 -1.4
1,331,200 - -1.6
1,331,243 - -0.3
1,331,248 + +0.6
1,331,261 - -0.0
1,331,272 + +0.6
1,331,277 + +1.7
1,331,281 + -1.6
1,331,320 + MPMX20_01267 0.12 +2.9
1,331,328 - MPMX20_01267 0.14 -2.0
1,331,344 + MPMX20_01267 0.16 -1.0
1,331,344 + MPMX20_01267 0.16 -0.3
1,331,423 + MPMX20_01267 0.27 -2.2
1,331,431 - MPMX20_01267 0.29 +1.7
1,331,480 + MPMX20_01267 0.36 -0.6
1,331,488 - MPMX20_01267 0.37 -2.4
1,331,535 + MPMX20_01267 0.44 -1.8
1,331,537 + MPMX20_01267 0.44 -3.3
1,331,537 + MPMX20_01267 0.44 +1.3
1,331,570 + MPMX20_01267 0.49 -2.7
1,331,571 - MPMX20_01267 0.49 -0.6
1,331,610 + MPMX20_01267 0.54 +1.2
1,331,618 - MPMX20_01267 0.56 +1.2
1,331,618 - MPMX20_01267 0.56 -0.9
1,331,618 - MPMX20_01267 0.56 -0.4
1,331,618 - MPMX20_01267 0.56 -2.8
1,331,674 + MPMX20_01267 0.64 -3.0
1,331,682 - MPMX20_01267 0.65 -1.4
1,331,704 - MPMX20_01267 0.68 +1.0
1,331,711 + MPMX20_01267 0.69 -3.1
1,331,717 - MPMX20_01267 0.70 +0.4
1,331,719 - MPMX20_01267 0.70 -0.8
1,331,719 - MPMX20_01267 0.70 +4.0
1,331,719 - MPMX20_01267 0.70 +2.5
1,331,719 - MPMX20_01267 0.70 -3.1
1,331,742 - MPMX20_01267 0.74 +1.2
1,331,753 - MPMX20_01267 0.75 +1.7
1,331,785 - MPMX20_01267 0.80 -1.2
1,331,802 + MPMX20_01267 0.82 +0.0
1,331,802 + MPMX20_01267 0.82 +0.3
1,331,810 - MPMX20_01267 0.83 -1.8
1,331,810 - MPMX20_01267 0.83 +2.4
1,331,825 - MPMX20_01267 0.86 -2.3
1,331,875 + -2.5
1,331,919 + -0.7
1,331,926 - -0.2
1,331,927 + -0.8
1,331,945 - -0.4
1,331,945 - +2.2
1,332,019 + MPMX20_01268 0.16 -0.6
1,332,024 + MPMX20_01268 0.17 -1.5
1,332,024 + MPMX20_01268 0.17 +0.7
1,332,024 + MPMX20_01268 0.17 +1.2
1,332,027 - MPMX20_01268 0.17 +0.7
1,332,032 - MPMX20_01268 0.18 +0.4
1,332,059 + MPMX20_01268 0.23 -0.8
1,332,072 - MPMX20_01268 0.25 +0.3
1,332,098 + MPMX20_01268 0.29 +2.3
1,332,126 + MPMX20_01268 0.33 -0.4
1,332,130 - MPMX20_01268 0.34 +1.2
1,332,145 - MPMX20_01268 0.37 -0.3
1,332,149 + MPMX20_01268 0.37 +1.1
1,332,150 - MPMX20_01268 0.37 -1.4
1,332,219 + MPMX20_01268 0.49 -1.6

Or see this region's nucleotide sequence