Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01135

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
1,194,419	-		MPMX20_01133	0.32	+0.0
1,194,536	-		MPMX20_01133	0.50	+1.0
1,194,545	-		MPMX20_01133	0.51	-0.3
1,194,584	-		MPMX20_01133	0.57	-0.8
1,194,587	+		MPMX20_01133	0.57	-0.1
1,194,614	+		MPMX20_01133	0.61	-3.0
1,194,625	+		MPMX20_01133	0.63	-1.4
1,194,625	+		MPMX20_01133	0.63	+2.8
1,194,633	-		MPMX20_01133	0.64	+0.3
1,194,633	-		MPMX20_01133	0.64	-1.2
1,194,700	-		MPMX20_01133	0.75	+0.6
1,194,700	-		MPMX20_01133	0.75	+2.8
1,194,733	+		MPMX20_01133	0.80	-0.5
1,194,740	-		MPMX20_01133	0.81	+2.8
1,194,740	-		MPMX20_01133	0.81	-0.1
1,194,771	-		MPMX20_01133	0.85	-1.6
1,194,810	-				-2.6
1,194,814	+				-1.2
1,194,831	-				+0.6
1,194,868	-				+2.7
1,194,978	+				+0.2
1,195,025	+		MPMX20_01134	0.10	-0.9
1,195,139	+		MPMX20_01134	0.41	-0.1
1,195,147	-		MPMX20_01134	0.43	+0.8
1,195,200	+		MPMX20_01134	0.58	+0.9
1,195,260	-		MPMX20_01134	0.74	+0.5
1,195,282	+		MPMX20_01134	0.80	+2.7
1,195,282	+		MPMX20_01134	0.80	+0.7
1,195,290	-		MPMX20_01134	0.82	+1.0
1,195,321	+				-0.4
1,195,396	+				+0.1
1,195,594	-		MPMX20_01135	0.42	-1.1
1,195,666	+		MPMX20_01135	0.54	-1.3
1,195,698	+		MPMX20_01135	0.60	+0.1
1,195,698	+		MPMX20_01135	0.60	-2.8
1,195,706	-		MPMX20_01135	0.61	-0.1
1,195,706	-		MPMX20_01135	0.61	-2.9
1,195,706	-		MPMX20_01135	0.61	-2.9
1,195,818	-		MPMX20_01135	0.80	-0.3
1,195,847	+		MPMX20_01135	0.85	+0.7
1,195,859	+		MPMX20_01135	0.87	+1.7
1,195,863	-		MPMX20_01135	0.88	-2.1
1,195,863	-		MPMX20_01135	0.88	-3.2
1,195,867	-		MPMX20_01135	0.88	-3.6
1,195,937	+				-0.5
1,196,041	-				+0.2
1,196,146	-				-0.9
1,196,161	-				-1.3
1,196,161	-				-0.3
1,196,190	-				-1.9
1,196,191	-				-1.6
1,196,202	+				+0.5
1,196,229	+				-0.8
1,196,237	-		MPMX20_01136	0.10	-1.1
1,196,253	-		MPMX20_01136	0.12	-1.9
1,196,297	+		MPMX20_01136	0.15	+0.4
1,196,306	-		MPMX20_01136	0.16	+1.1
1,196,431	+		MPMX20_01136	0.28	+0.4
1,196,439	-		MPMX20_01136	0.28	+0.4
1,196,440	+		MPMX20_01136	0.28	-1.5
1,196,440	+		MPMX20_01136	0.28	-1.4
1,196,448	-		MPMX20_01136	0.29	-2.8
1,196,448	-		MPMX20_01136	0.29	-2.5
1,196,448	-		MPMX20_01136	0.29	+0.6
1,196,448	-		MPMX20_01136	0.29	-0.9
1,196,448	-		MPMX20_01136	0.29	-1.1
1,196,499	+		MPMX20_01136	0.34	+0.6
1,196,499	+		MPMX20_01136	0.34	-2.0
1,196,507	-		MPMX20_01136	0.35	-1.8
1,196,517	+		MPMX20_01136	0.35	-0.3
1,196,525	-		MPMX20_01136	0.36	-1.6
1,196,563	+		MPMX20_01136	0.40	-0.8
1,196,571	-		MPMX20_01136	0.40	+1.2
1,196,573	+		MPMX20_01136	0.40	-1.6
1,196,581	-		MPMX20_01136	0.41	-1.6
1,196,581	-		MPMX20_01136	0.41	-1.9
1,196,591	-		MPMX20_01136	0.42	+0.1
1,196,618	+		MPMX20_01136	0.45	+0.1
1,196,632	+		MPMX20_01136	0.46	-0.3
1,196,718	-		MPMX20_01136	0.54	+1.3
1,196,756	-		MPMX20_01136	0.57	-1.1
1,196,775	-		MPMX20_01136	0.59	-0.5
1,196,778	+		MPMX20_01136	0.59	+1.0
1,196,778	+		MPMX20_01136	0.59	+1.5
1,196,778	+		MPMX20_01136	0.59	+2.6
1,196,780	-		MPMX20_01136	0.59	-1.6
1,196,786	+		MPMX20_01136	0.60	+0.1
1,196,786	-		MPMX20_01136	0.60	+0.2
1,196,791	+		MPMX20_01136	0.60	+0.1
1,196,799	-		MPMX20_01136	0.61	-0.2
1,196,843	-		MPMX20_01136	0.65	+1.8
1,196,853	+		MPMX20_01136	0.66	-0.5
1,196,917	+		MPMX20_01136	0.72	-0.1