Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00872 and MPMX20_00873 are separated by 28 nucleotides MPMX20_00873 and MPMX20_00874 overlap by 14 nucleotides MPMX20_00874 and MPMX20_00875 are separated by 196 nucleotides MPMX20_00875 and MPMX20_00876 overlap by 4 nucleotides
MPMX20_00872: MPMX20_00872 - tRNA(Ile)-lysidine synthase, at 923,897 to 925,183
_00872
MPMX20_00873: MPMX20_00873 - Protein rof, at 925,212 to 925,472
_00873
MPMX20_00874: MPMX20_00874 - hypothetical protein, at 925,459 to 925,659
_00874
MPMX20_00875: MPMX20_00875 - putative protein YaeQ, at 925,856 to 926,401
_00875
MPMX20_00876: MPMX20_00876 - Peptidyl-tRNA hydrolase ArfB, at 926,398 to 926,820
_00876
Position (kb) 925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 925.186 kb on - strand at 925.232 kb on - strand at 925.348 kb on + strand, within MPMX20_00873 at 925.391 kb on + strand, within MPMX20_00873 at 925.391 kb on + strand, within MPMX20_00873 at 925.399 kb on - strand, within MPMX20_00873 at 925.535 kb on - strand, within MPMX20_00874 at 925.539 kb on + strand, within MPMX20_00874 at 925.585 kb on + strand, within MPMX20_00874 at 925.585 kb on + strand, within MPMX20_00874 at 925.597 kb on + strand, within MPMX20_00874 at 925.597 kb on + strand, within MPMX20_00874 at 925.597 kb on + strand, within MPMX20_00874 at 925.605 kb on - strand, within MPMX20_00874 at 925.664 kb on + strand at 925.672 kb on - strand at 925.672 kb on - strand at 925.687 kb on - strand at 925.689 kb on - strand at 925.706 kb on - strand at 925.721 kb on - strand at 925.757 kb on - strand at 925.757 kb on - strand at 925.799 kb on - strand at 925.834 kb on - strand at 925.846 kb on + strand at 925.926 kb on - strand, within MPMX20_00875 at 925.926 kb on - strand, within MPMX20_00875 at 926.073 kb on + strand, within MPMX20_00875 at 926.151 kb on + strand, within MPMX20_00875 at 926.223 kb on - strand, within MPMX20_00875 at 926.271 kb on + strand, within MPMX20_00875 at 926.319 kb on + strand, within MPMX20_00875 at 926.331 kb on + strand, within MPMX20_00875 at 926.416 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 925,186 - -2.8 925,232 - +0.8 925,348 + MPMX20_00873 0.52 -0.9 925,391 + MPMX20_00873 0.69 -2.9 925,391 + MPMX20_00873 0.69 -1.4 925,399 - MPMX20_00873 0.72 +0.3 925,535 - MPMX20_00874 0.38 -2.9 925,539 + MPMX20_00874 0.40 -1.7 925,585 + MPMX20_00874 0.63 +1.8 925,585 + MPMX20_00874 0.63 -0.3 925,597 + MPMX20_00874 0.69 -0.2 925,597 + MPMX20_00874 0.69 +1.3 925,597 + MPMX20_00874 0.69 +2.0 925,605 - MPMX20_00874 0.73 -1.4 925,664 + -1.4 925,672 - +0.3 925,672 - +0.5 925,687 - +0.9 925,689 - -1.5 925,706 - +1.4 925,721 - -0.6 925,757 - +5.0 925,757 - +2.5 925,799 - -0.6 925,834 - -0.2 925,846 + +0.2 925,926 - MPMX20_00875 0.13 -0.7 925,926 - MPMX20_00875 0.13 -0.3 926,073 + MPMX20_00875 0.40 -2.4 926,151 + MPMX20_00875 0.54 +0.1 926,223 - MPMX20_00875 0.67 +0.6 926,271 + MPMX20_00875 0.76 +0.3 926,319 + MPMX20_00875 0.85 -2.1 926,331 + MPMX20_00875 0.87 -0.3 926,416 + +2.5
Or see this region's nucleotide sequence