Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00807

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00806 and MPMX20_00807 are separated by 123 nucleotidesMPMX20_00807 and MPMX20_00808 are separated by 14 nucleotides MPMX20_00806: MPMX20_00806 - Pyruvate dehydrogenase complex repressor, at 843,462 to 844,226 _00806 MPMX20_00807: MPMX20_00807 - Pyruvate dehydrogenase E1 component, at 844,350 to 847,013 _00807 MPMX20_00808: MPMX20_00808 - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 847,028 to 848,923 _00808 Position (kb) 844 845 846 847 848Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 843.359 kb on + strandat 843.385 kb on - strandat 843.761 kb on + strand, within MPMX20_00806at 843.805 kb on - strand, within MPMX20_00806at 843.812 kb on + strand, within MPMX20_00806at 843.812 kb on + strand, within MPMX20_00806at 843.820 kb on - strand, within MPMX20_00806at 843.822 kb on + strand, within MPMX20_00806at 843.822 kb on + strand, within MPMX20_00806at 843.822 kb on + strand, within MPMX20_00806at 843.859 kb on + strand, within MPMX20_00806at 843.966 kb on + strand, within MPMX20_00806at 843.976 kb on + strand, within MPMX20_00806at 844.022 kb on + strand, within MPMX20_00806at 844.112 kb on - strand, within MPMX20_00806at 844.269 kb on + strandat 844.407 kb on - strandat 844.407 kb on - strandat 844.407 kb on - strandat 844.443 kb on - strandat 844.678 kb on + strand, within MPMX20_00807at 844.773 kb on + strand, within MPMX20_00807at 844.816 kb on - strand, within MPMX20_00807at 845.008 kb on + strand, within MPMX20_00807at 845.008 kb on + strand, within MPMX20_00807at 845.016 kb on - strand, within MPMX20_00807at 845.016 kb on - strand, within MPMX20_00807at 845.208 kb on + strand, within MPMX20_00807at 845.236 kb on - strand, within MPMX20_00807at 845.280 kb on - strand, within MPMX20_00807at 845.343 kb on + strand, within MPMX20_00807at 845.693 kb on + strand, within MPMX20_00807at 846.044 kb on - strand, within MPMX20_00807at 846.044 kb on - strand, within MPMX20_00807at 846.134 kb on + strand, within MPMX20_00807at 846.261 kb on + strand, within MPMX20_00807at 846.294 kb on - strand, within MPMX20_00807at 846.584 kb on - strand, within MPMX20_00807at 846.601 kb on - strand, within MPMX20_00807at 846.607 kb on + strand, within MPMX20_00807at 846.620 kb on - strand, within MPMX20_00807at 846.620 kb on - strand, within MPMX20_00807at 846.620 kb on - strand, within MPMX20_00807at 846.722 kb on + strand, within MPMX20_00807at 846.904 kb on - strandat 847.015 kb on - strandat 847.054 kb on + strandat 847.137 kb on - strandat 847.794 kb on + strand, within MPMX20_00808

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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843,359 + +4.8
843,385 - +0.3
843,761 + MPMX20_00806 0.39 -2.5
843,805 - MPMX20_00806 0.45 -0.1
843,812 + MPMX20_00806 0.46 -0.9
843,812 + MPMX20_00806 0.46 -2.6
843,820 - MPMX20_00806 0.47 -0.8
843,822 + MPMX20_00806 0.47 -3.2
843,822 + MPMX20_00806 0.47 -0.7
843,822 + MPMX20_00806 0.47 -1.2
843,859 + MPMX20_00806 0.52 -0.3
843,966 + MPMX20_00806 0.66 +0.7
843,976 + MPMX20_00806 0.67 -0.5
844,022 + MPMX20_00806 0.73 -3.1
844,112 - MPMX20_00806 0.85 -0.3
844,269 + -1.3
844,407 - -0.5
844,407 - +0.3
844,407 - -0.5
844,443 - -0.1
844,678 + MPMX20_00807 0.12 +0.7
844,773 + MPMX20_00807 0.16 +2.7
844,816 - MPMX20_00807 0.17 +0.1
845,008 + MPMX20_00807 0.25 -0.8
845,008 + MPMX20_00807 0.25 +1.7
845,016 - MPMX20_00807 0.25 -0.1
845,016 - MPMX20_00807 0.25 +0.7
845,208 + MPMX20_00807 0.32 +0.3
845,236 - MPMX20_00807 0.33 +0.7
845,280 - MPMX20_00807 0.35 +1.7
845,343 + MPMX20_00807 0.37 -1.1
845,693 + MPMX20_00807 0.50 +0.7
846,044 - MPMX20_00807 0.64 +2.7
846,044 - MPMX20_00807 0.64 +1.7
846,134 + MPMX20_00807 0.67 +1.7
846,261 + MPMX20_00807 0.72 -0.7
846,294 - MPMX20_00807 0.73 +1.7
846,584 - MPMX20_00807 0.84 -0.3
846,601 - MPMX20_00807 0.84 -0.8
846,607 + MPMX20_00807 0.85 +1.7
846,620 - MPMX20_00807 0.85 -0.1
846,620 - MPMX20_00807 0.85 +0.1
846,620 - MPMX20_00807 0.85 +1.1
846,722 + MPMX20_00807 0.89 +1.1
846,904 - +0.7
847,015 - +0.7
847,054 + -1.5
847,137 - -0.5
847,794 + MPMX20_00808 0.40 +0.1

Or see this region's nucleotide sequence