Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00757

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00756 and MPMX20_00757 are separated by 10 nucleotidesMPMX20_00757 and MPMX20_00758 are separated by 336 nucleotides MPMX20_00756: MPMX20_00756 - L-arabinose isomerase, at 785,737 to 787,239 _00756 MPMX20_00757: MPMX20_00757 - Ribulokinase, at 787,250 to 788,959 _00757 MPMX20_00758: MPMX20_00758 - Arabinose operon regulatory protein, at 789,296 to 790,141 _00758 Position (kb) 787 788 789Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7at 786.381 kb on + strand, within MPMX20_00756at 786.407 kb on - strand, within MPMX20_00756at 786.407 kb on - strand, within MPMX20_00756at 786.435 kb on + strand, within MPMX20_00756at 786.435 kb on + strand, within MPMX20_00756at 786.435 kb on + strand, within MPMX20_00756at 786.443 kb on - strand, within MPMX20_00756at 786.443 kb on - strand, within MPMX20_00756at 786.492 kb on - strand, within MPMX20_00756at 786.545 kb on + strand, within MPMX20_00756at 786.594 kb on + strand, within MPMX20_00756at 786.594 kb on + strand, within MPMX20_00756at 786.595 kb on + strand, within MPMX20_00756at 786.602 kb on - strand, within MPMX20_00756at 786.609 kb on + strand, within MPMX20_00756at 786.635 kb on + strand, within MPMX20_00756at 786.715 kb on - strand, within MPMX20_00756at 786.715 kb on - strand, within MPMX20_00756at 786.750 kb on + strand, within MPMX20_00756at 786.800 kb on - strand, within MPMX20_00756at 786.863 kb on + strand, within MPMX20_00756at 786.898 kb on + strand, within MPMX20_00756at 786.901 kb on - strand, within MPMX20_00756at 786.922 kb on - strand, within MPMX20_00756at 786.924 kb on + strand, within MPMX20_00756at 786.932 kb on - strand, within MPMX20_00756at 786.932 kb on - strand, within MPMX20_00756at 786.953 kb on + strand, within MPMX20_00756at 786.961 kb on - strand, within MPMX20_00756at 786.987 kb on + strand, within MPMX20_00756at 786.987 kb on + strand, within MPMX20_00756at 786.987 kb on + strand, within MPMX20_00756at 786.994 kb on + strand, within MPMX20_00756at 786.995 kb on - strand, within MPMX20_00756at 786.995 kb on - strand, within MPMX20_00756at 787.000 kb on - strand, within MPMX20_00756at 787.109 kb on + strandat 787.181 kb on - strandat 787.181 kb on - strandat 787.183 kb on + strandat 787.183 kb on + strandat 787.183 kb on + strandat 787.186 kb on - strandat 787.196 kb on - strandat 787.196 kb on - strandat 787.223 kb on - strandat 787.255 kb on + strandat 787.261 kb on + strandat 787.263 kb on - strandat 787.269 kb on - strandat 787.283 kb on + strandat 787.291 kb on - strandat 787.351 kb on + strandat 787.418 kb on - strandat 787.429 kb on - strand, within MPMX20_00757at 787.442 kb on - strand, within MPMX20_00757at 787.491 kb on + strand, within MPMX20_00757at 787.491 kb on + strand, within MPMX20_00757at 787.491 kb on + strand, within MPMX20_00757at 787.504 kb on - strand, within MPMX20_00757at 787.529 kb on + strand, within MPMX20_00757at 787.537 kb on + strand, within MPMX20_00757at 787.537 kb on - strand, within MPMX20_00757at 787.537 kb on - strand, within MPMX20_00757at 787.537 kb on - strand, within MPMX20_00757at 787.608 kb on + strand, within MPMX20_00757at 787.616 kb on - strand, within MPMX20_00757at 787.639 kb on - strand, within MPMX20_00757at 787.641 kb on - strand, within MPMX20_00757at 787.656 kb on - strand, within MPMX20_00757at 787.735 kb on - strand, within MPMX20_00757at 787.780 kb on - strand, within MPMX20_00757at 787.782 kb on + strand, within MPMX20_00757at 787.821 kb on + strand, within MPMX20_00757at 787.821 kb on + strand, within MPMX20_00757at 787.829 kb on - strand, within MPMX20_00757at 787.881 kb on - strand, within MPMX20_00757at 787.881 kb on - strand, within MPMX20_00757at 787.886 kb on - strand, within MPMX20_00757at 787.939 kb on - strand, within MPMX20_00757at 787.963 kb on + strand, within MPMX20_00757at 787.989 kb on - strand, within MPMX20_00757at 787.997 kb on - strand, within MPMX20_00757at 788.042 kb on + strand, within MPMX20_00757at 788.042 kb on + strand, within MPMX20_00757at 788.042 kb on + strand, within MPMX20_00757at 788.050 kb on - strand, within MPMX20_00757at 788.050 kb on - strand, within MPMX20_00757at 788.069 kb on + strand, within MPMX20_00757at 788.093 kb on - strand, within MPMX20_00757at 788.097 kb on - strand, within MPMX20_00757at 788.388 kb on + strand, within MPMX20_00757at 788.404 kb on - strand, within MPMX20_00757at 788.451 kb on + strand, within MPMX20_00757at 788.466 kb on - strand, within MPMX20_00757at 788.495 kb on - strand, within MPMX20_00757at 788.504 kb on + strand, within MPMX20_00757at 788.564 kb on + strand, within MPMX20_00757at 788.579 kb on - strand, within MPMX20_00757at 788.581 kb on + strand, within MPMX20_00757at 788.589 kb on - strand, within MPMX20_00757at 788.606 kb on - strand, within MPMX20_00757at 788.627 kb on - strand, within MPMX20_00757at 788.686 kb on + strand, within MPMX20_00757at 788.785 kb on + strand, within MPMX20_00757at 788.790 kb on - strandat 788.837 kb on - strandat 788.842 kb on + strandat 788.842 kb on + strandat 788.842 kb on + strandat 788.842 kb on + strandat 788.842 kb on + strandat 788.850 kb on - strandat 788.850 kb on - strandat 788.871 kb on - strandat 788.871 kb on - strandat 788.871 kb on - strandat 788.895 kb on + strandat 789.002 kb on - strandat 789.069 kb on + strandat 789.188 kb on + strandat 789.196 kb on - strandat 789.230 kb on + strandat 789.230 kb on + strandat 789.336 kb on + strandat 789.359 kb on + strandat 789.359 kb on + strandat 789.360 kb on + strandat 789.375 kb on + strandat 789.426 kb on + strand, within MPMX20_00758at 789.426 kb on + strand, within MPMX20_00758at 789.434 kb on - strand, within MPMX20_00758at 789.434 kb on - strand, within MPMX20_00758at 789.439 kb on - strand, within MPMX20_00758at 789.446 kb on - strand, within MPMX20_00758at 789.575 kb on - strand, within MPMX20_00758at 789.585 kb on + strand, within MPMX20_00758at 789.585 kb on + strand, within MPMX20_00758at 789.618 kb on - strand, within MPMX20_00758at 789.666 kb on + strand, within MPMX20_00758at 789.724 kb on - strand, within MPMX20_00758at 789.758 kb on - strand, within MPMX20_00758at 789.758 kb on - strand, within MPMX20_00758at 789.758 kb on - strand, within MPMX20_00758at 789.773 kb on + strand, within MPMX20_00758at 789.778 kb on - strand, within MPMX20_00758at 789.837 kb on + strand, within MPMX20_00758at 789.847 kb on + strand, within MPMX20_00758at 789.847 kb on + strand, within MPMX20_00758at 789.925 kb on - strand, within MPMX20_00758at 789.940 kb on - strand, within MPMX20_00758

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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786,381 + MPMX20_00756 0.43 -1.3
786,407 - MPMX20_00756 0.45 -1.0
786,407 - MPMX20_00756 0.45 -1.1
786,435 + MPMX20_00756 0.46 -1.8
786,435 + MPMX20_00756 0.46 -2.7
786,435 + MPMX20_00756 0.46 -0.5
786,443 - MPMX20_00756 0.47 -0.7
786,443 - MPMX20_00756 0.47 -1.4
786,492 - MPMX20_00756 0.50 -2.9
786,545 + MPMX20_00756 0.54 -1.8
786,594 + MPMX20_00756 0.57 -0.3
786,594 + MPMX20_00756 0.57 -0.4
786,595 + MPMX20_00756 0.57 +1.1
786,602 - MPMX20_00756 0.58 -2.3
786,609 + MPMX20_00756 0.58 +0.5
786,635 + MPMX20_00756 0.60 +0.3
786,715 - MPMX20_00756 0.65 -2.0
786,715 - MPMX20_00756 0.65 -0.6
786,750 + MPMX20_00756 0.67 -0.7
786,800 - MPMX20_00756 0.71 +0.5
786,863 + MPMX20_00756 0.75 +1.5
786,898 + MPMX20_00756 0.77 -0.4
786,901 - MPMX20_00756 0.77 -2.4
786,922 - MPMX20_00756 0.79 +0.8
786,924 + MPMX20_00756 0.79 -1.8
786,932 - MPMX20_00756 0.80 -0.3
786,932 - MPMX20_00756 0.80 -2.4
786,953 + MPMX20_00756 0.81 -2.6
786,961 - MPMX20_00756 0.81 +0.6
786,987 + MPMX20_00756 0.83 -1.5
786,987 + MPMX20_00756 0.83 -1.7
786,987 + MPMX20_00756 0.83 -3.8
786,994 + MPMX20_00756 0.84 +0.3
786,995 - MPMX20_00756 0.84 -2.0
786,995 - MPMX20_00756 0.84 +0.1
787,000 - MPMX20_00756 0.84 -3.9
787,109 + -2.3
787,181 - -1.3
787,181 - -1.8
787,183 + -0.5
787,183 + +2.6
787,183 + -0.5
787,186 - -2.9
787,196 - +1.2
787,196 - -0.7
787,223 - -2.8
787,255 + -2.3
787,261 + +1.0
787,263 - +0.3
787,269 - +1.2
787,283 + -1.3
787,291 - -1.6
787,351 + +2.6
787,418 - +7.6
787,429 - MPMX20_00757 0.10 -1.5
787,442 - MPMX20_00757 0.11 +0.3
787,491 + MPMX20_00757 0.14 -0.1
787,491 + MPMX20_00757 0.14 -2.8
787,491 + MPMX20_00757 0.14 +0.4
787,504 - MPMX20_00757 0.15 -1.8
787,529 + MPMX20_00757 0.16 -1.2
787,537 + MPMX20_00757 0.17 -2.1
787,537 - MPMX20_00757 0.17 -1.4
787,537 - MPMX20_00757 0.17 -1.9
787,537 - MPMX20_00757 0.17 +0.6
787,608 + MPMX20_00757 0.21 -0.8
787,616 - MPMX20_00757 0.21 -1.2
787,639 - MPMX20_00757 0.23 -1.7
787,641 - MPMX20_00757 0.23 -3.5
787,656 - MPMX20_00757 0.24 +0.7
787,735 - MPMX20_00757 0.28 +0.3
787,780 - MPMX20_00757 0.31 -2.9
787,782 + MPMX20_00757 0.31 -0.2
787,821 + MPMX20_00757 0.33 +0.4
787,821 + MPMX20_00757 0.33 +0.3
787,829 - MPMX20_00757 0.34 -0.3
787,881 - MPMX20_00757 0.37 -2.9
787,881 - MPMX20_00757 0.37 -2.7
787,886 - MPMX20_00757 0.37 -0.2
787,939 - MPMX20_00757 0.40 +0.0
787,963 + MPMX20_00757 0.42 +0.5
787,989 - MPMX20_00757 0.43 +2.4
787,997 - MPMX20_00757 0.44 -3.0
788,042 + MPMX20_00757 0.46 -2.5
788,042 + MPMX20_00757 0.46 -0.7
788,042 + MPMX20_00757 0.46 -0.8
788,050 - MPMX20_00757 0.47 -2.3
788,050 - MPMX20_00757 0.47 -1.9
788,069 + MPMX20_00757 0.48 -3.3
788,093 - MPMX20_00757 0.49 -2.0
788,097 - MPMX20_00757 0.50 +0.0
788,388 + MPMX20_00757 0.67 -2.0
788,404 - MPMX20_00757 0.67 +0.0
788,451 + MPMX20_00757 0.70 -1.5
788,466 - MPMX20_00757 0.71 -1.4
788,495 - MPMX20_00757 0.73 -1.2
788,504 + MPMX20_00757 0.73 -0.0
788,564 + MPMX20_00757 0.77 -1.5
788,579 - MPMX20_00757 0.78 -0.4
788,581 + MPMX20_00757 0.78 +1.4
788,589 - MPMX20_00757 0.78 -2.2
788,606 - MPMX20_00757 0.79 -0.7
788,627 - MPMX20_00757 0.81 -1.5
788,686 + MPMX20_00757 0.84 -1.3
788,785 + MPMX20_00757 0.90 +0.2
788,790 - -1.1
788,837 - -1.1
788,842 + -2.4
788,842 + -3.3
788,842 + -1.8
788,842 + -2.8
788,842 + -3.2
788,850 - -0.3
788,850 - -0.4
788,871 - -0.8
788,871 - -1.3
788,871 - -1.1
788,895 + +0.5
789,002 - -1.0
789,069 + +1.0
789,188 + -0.9
789,196 - +0.3
789,230 + -2.5
789,230 + -0.3
789,336 + +0.8
789,359 + -0.9
789,359 + -2.6
789,360 + +0.0
789,375 + -2.4
789,426 + MPMX20_00758 0.15 -0.2
789,426 + MPMX20_00758 0.15 -0.7
789,434 - MPMX20_00758 0.16 -2.4
789,434 - MPMX20_00758 0.16 -1.3
789,439 - MPMX20_00758 0.17 -1.5
789,446 - MPMX20_00758 0.18 +0.8
789,575 - MPMX20_00758 0.33 +2.8
789,585 + MPMX20_00758 0.34 -1.1
789,585 + MPMX20_00758 0.34 -0.4
789,618 - MPMX20_00758 0.38 -0.4
789,666 + MPMX20_00758 0.44 -2.4
789,724 - MPMX20_00758 0.51 -2.2
789,758 - MPMX20_00758 0.55 +1.9
789,758 - MPMX20_00758 0.55 -0.5
789,758 - MPMX20_00758 0.55 -0.7
789,773 + MPMX20_00758 0.56 -1.7
789,778 - MPMX20_00758 0.57 -2.5
789,837 + MPMX20_00758 0.64 +0.7
789,847 + MPMX20_00758 0.65 +1.0
789,847 + MPMX20_00758 0.65 +0.5
789,925 - MPMX20_00758 0.74 -0.2
789,940 - MPMX20_00758 0.76 -0.8

Or see this region's nucleotide sequence