Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00711

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00710 and MPMX20_00711 are separated by 1 nucleotidesMPMX20_00711 and MPMX20_00712 are separated by 3 nucleotides MPMX20_00710: MPMX20_00710 - Bifunctional aspartokinase/homoserine dehydrogenase 1, at 731,140 to 733,602 _00710 MPMX20_00711: MPMX20_00711 - Homoserine kinase, at 733,604 to 734,533 _00711 MPMX20_00712: MPMX20_00712 - Threonine synthase, at 734,537 to 735,823 _00712 Position (kb) 733 734 735Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 732.675 kb on + strand, within MPMX20_00710at 732.719 kb on + strand, within MPMX20_00710at 732.754 kb on - strand, within MPMX20_00710at 732.767 kb on + strand, within MPMX20_00710at 733.086 kb on + strand, within MPMX20_00710at 733.088 kb on - strand, within MPMX20_00710at 733.126 kb on - strand, within MPMX20_00710at 733.128 kb on + strand, within MPMX20_00710at 733.188 kb on + strand, within MPMX20_00710at 733.211 kb on + strand, within MPMX20_00710at 733.217 kb on + strand, within MPMX20_00710at 733.270 kb on - strand, within MPMX20_00710at 733.282 kb on - strand, within MPMX20_00710at 733.297 kb on - strand, within MPMX20_00710at 733.309 kb on - strand, within MPMX20_00710at 733.309 kb on - strand, within MPMX20_00710at 733.309 kb on - strand, within MPMX20_00710at 733.363 kb on + strandat 733.396 kb on + strandat 733.396 kb on + strandat 733.404 kb on - strandat 733.404 kb on - strandat 733.404 kb on - strandat 733.597 kb on + strandat 733.624 kb on + strandat 733.660 kb on + strandat 733.697 kb on - strand, within MPMX20_00711at 733.702 kb on - strand, within MPMX20_00711at 733.731 kb on + strand, within MPMX20_00711at 733.732 kb on - strand, within MPMX20_00711at 733.732 kb on - strand, within MPMX20_00711at 733.745 kb on + strand, within MPMX20_00711at 733.811 kb on + strand, within MPMX20_00711at 733.814 kb on - strand, within MPMX20_00711at 733.814 kb on - strand, within MPMX20_00711at 733.829 kb on - strand, within MPMX20_00711at 733.829 kb on - strand, within MPMX20_00711at 733.881 kb on + strand, within MPMX20_00711at 733.881 kb on + strand, within MPMX20_00711at 733.884 kb on - strand, within MPMX20_00711at 733.886 kb on + strand, within MPMX20_00711at 733.886 kb on + strand, within MPMX20_00711at 733.886 kb on + strand, within MPMX20_00711at 733.889 kb on - strand, within MPMX20_00711at 733.889 kb on - strand, within MPMX20_00711at 733.894 kb on - strand, within MPMX20_00711at 733.997 kb on - strand, within MPMX20_00711at 734.103 kb on + strand, within MPMX20_00711at 734.103 kb on + strand, within MPMX20_00711at 734.103 kb on + strand, within MPMX20_00711at 734.104 kb on - strand, within MPMX20_00711at 734.111 kb on - strand, within MPMX20_00711at 734.111 kb on - strand, within MPMX20_00711at 734.111 kb on - strand, within MPMX20_00711at 734.131 kb on - strand, within MPMX20_00711at 734.139 kb on + strand, within MPMX20_00711at 734.154 kb on - strand, within MPMX20_00711at 734.166 kb on + strand, within MPMX20_00711at 734.197 kb on + strand, within MPMX20_00711at 734.205 kb on - strand, within MPMX20_00711at 734.205 kb on - strand, within MPMX20_00711at 734.214 kb on + strand, within MPMX20_00711at 734.234 kb on + strand, within MPMX20_00711at 734.242 kb on - strand, within MPMX20_00711at 734.302 kb on + strand, within MPMX20_00711at 734.302 kb on + strand, within MPMX20_00711at 734.307 kb on + strand, within MPMX20_00711at 734.307 kb on + strand, within MPMX20_00711at 734.307 kb on + strand, within MPMX20_00711at 734.307 kb on + strand, within MPMX20_00711at 734.315 kb on - strand, within MPMX20_00711at 734.315 kb on - strand, within MPMX20_00711at 734.325 kb on + strand, within MPMX20_00711at 734.368 kb on + strand, within MPMX20_00711at 734.369 kb on - strand, within MPMX20_00711at 734.419 kb on + strand, within MPMX20_00711at 734.452 kb on - strandat 734.503 kb on + strandat 734.527 kb on - strandat 734.572 kb on + strandat 734.572 kb on + strandat 734.587 kb on + strandat 734.595 kb on + strandat 734.595 kb on + strandat 734.603 kb on - strandat 734.603 kb on - strandat 734.623 kb on + strandat 734.661 kb on + strandat 734.672 kb on - strand, within MPMX20_00712at 734.680 kb on - strand, within MPMX20_00712at 734.717 kb on + strand, within MPMX20_00712at 734.808 kb on - strand, within MPMX20_00712at 734.820 kb on + strand, within MPMX20_00712at 734.820 kb on + strand, within MPMX20_00712at 734.820 kb on + strand, within MPMX20_00712at 734.820 kb on + strand, within MPMX20_00712at 734.828 kb on - strand, within MPMX20_00712at 734.830 kb on + strand, within MPMX20_00712at 734.830 kb on + strand, within MPMX20_00712at 734.830 kb on + strand, within MPMX20_00712at 734.843 kb on + strand, within MPMX20_00712at 734.846 kb on - strand, within MPMX20_00712at 735.014 kb on + strand, within MPMX20_00712at 735.155 kb on + strand, within MPMX20_00712at 735.163 kb on - strand, within MPMX20_00712at 735.163 kb on - strand, within MPMX20_00712at 735.202 kb on + strand, within MPMX20_00712at 735.391 kb on + strand, within MPMX20_00712at 735.441 kb on + strand, within MPMX20_00712at 735.493 kb on + strand, within MPMX20_00712at 735.514 kb on + strand, within MPMX20_00712at 735.514 kb on + strand, within MPMX20_00712

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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732,675 + MPMX20_00710 0.62 +4.9
732,719 + MPMX20_00710 0.64 -2.1
732,754 - MPMX20_00710 0.66 -3.9
732,767 + MPMX20_00710 0.66 -1.0
733,086 + MPMX20_00710 0.79 -0.5
733,088 - MPMX20_00710 0.79 +0.0
733,126 - MPMX20_00710 0.81 +0.4
733,128 + MPMX20_00710 0.81 -1.7
733,188 + MPMX20_00710 0.83 -0.7
733,211 + MPMX20_00710 0.84 +1.6
733,217 + MPMX20_00710 0.84 -0.2
733,270 - MPMX20_00710 0.86 -1.1
733,282 - MPMX20_00710 0.87 -1.2
733,297 - MPMX20_00710 0.88 +0.3
733,309 - MPMX20_00710 0.88 -0.9
733,309 - MPMX20_00710 0.88 -1.8
733,309 - MPMX20_00710 0.88 -1.2
733,363 + +1.5
733,396 + -2.2
733,396 + -0.2
733,404 - +0.0
733,404 - +0.3
733,404 - -3.7
733,597 + +0.0
733,624 + -3.3
733,660 + +0.4
733,697 - MPMX20_00711 0.10 -1.8
733,702 - MPMX20_00711 0.11 -3.3
733,731 + MPMX20_00711 0.14 -2.9
733,732 - MPMX20_00711 0.14 -3.9
733,732 - MPMX20_00711 0.14 -0.4
733,745 + MPMX20_00711 0.15 -1.5
733,811 + MPMX20_00711 0.22 -0.5
733,814 - MPMX20_00711 0.23 +2.6
733,814 - MPMX20_00711 0.23 -1.5
733,829 - MPMX20_00711 0.24 -1.4
733,829 - MPMX20_00711 0.24 -1.7
733,881 + MPMX20_00711 0.30 -3.1
733,881 + MPMX20_00711 0.30 -3.0
733,884 - MPMX20_00711 0.30 -2.5
733,886 + MPMX20_00711 0.30 -1.5
733,886 + MPMX20_00711 0.30 -2.2
733,886 + MPMX20_00711 0.30 -0.8
733,889 - MPMX20_00711 0.31 -1.2
733,889 - MPMX20_00711 0.31 -2.0
733,894 - MPMX20_00711 0.31 -3.0
733,997 - MPMX20_00711 0.42 -2.6
734,103 + MPMX20_00711 0.54 -3.2
734,103 + MPMX20_00711 0.54 -2.7
734,103 + MPMX20_00711 0.54 -2.0
734,104 - MPMX20_00711 0.54 -2.9
734,111 - MPMX20_00711 0.55 +0.4
734,111 - MPMX20_00711 0.55 -0.4
734,111 - MPMX20_00711 0.55 -2.0
734,131 - MPMX20_00711 0.57 -2.7
734,139 + MPMX20_00711 0.58 +1.0
734,154 - MPMX20_00711 0.59 -3.5
734,166 + MPMX20_00711 0.60 -3.1
734,197 + MPMX20_00711 0.64 -3.1
734,205 - MPMX20_00711 0.65 -2.8
734,205 - MPMX20_00711 0.65 -2.2
734,214 + MPMX20_00711 0.66 -0.8
734,234 + MPMX20_00711 0.68 +2.6
734,242 - MPMX20_00711 0.69 -1.5
734,302 + MPMX20_00711 0.75 -1.1
734,302 + MPMX20_00711 0.75 -0.5
734,307 + MPMX20_00711 0.76 +0.0
734,307 + MPMX20_00711 0.76 -1.2
734,307 + MPMX20_00711 0.76 -0.7
734,307 + MPMX20_00711 0.76 -2.8
734,315 - MPMX20_00711 0.76 -2.5
734,315 - MPMX20_00711 0.76 -1.5
734,325 + MPMX20_00711 0.78 -2.0
734,368 + MPMX20_00711 0.82 -1.0
734,369 - MPMX20_00711 0.82 -0.5
734,419 + MPMX20_00711 0.88 -2.0
734,452 - +1.0
734,503 + +2.6
734,527 - -2.3
734,572 + -0.8
734,572 + -3.4
734,587 + -0.7
734,595 + -1.5
734,595 + -1.4
734,603 - +0.9
734,603 - -1.3
734,623 + -2.5
734,661 + -3.1
734,672 - MPMX20_00712 0.10 -3.1
734,680 - MPMX20_00712 0.11 -2.1
734,717 + MPMX20_00712 0.14 -0.7
734,808 - MPMX20_00712 0.21 -1.5
734,820 + MPMX20_00712 0.22 -0.5
734,820 + MPMX20_00712 0.22 -1.9
734,820 + MPMX20_00712 0.22 -3.1
734,820 + MPMX20_00712 0.22 -3.0
734,828 - MPMX20_00712 0.23 -1.9
734,830 + MPMX20_00712 0.23 -3.3
734,830 + MPMX20_00712 0.23 -1.5
734,830 + MPMX20_00712 0.23 -3.0
734,843 + MPMX20_00712 0.24 -1.0
734,846 - MPMX20_00712 0.24 -1.0
735,014 + MPMX20_00712 0.37 -0.5
735,155 + MPMX20_00712 0.48 -2.2
735,163 - MPMX20_00712 0.49 -2.2
735,163 - MPMX20_00712 0.49 -3.2
735,202 + MPMX20_00712 0.52 -2.0
735,391 + MPMX20_00712 0.66 +1.6
735,441 + MPMX20_00712 0.70 -3.1
735,493 + MPMX20_00712 0.74 -2.8
735,514 + MPMX20_00712 0.76 -1.9
735,514 + MPMX20_00712 0.76 +1.0

Or see this region's nucleotide sequence