Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00650 and MPMX20_00651 are separated by 85 nucleotides MPMX20_00651 and MPMX20_00652 overlap by 4 nucleotides MPMX20_00652 and MPMX20_00653 are separated by 148 nucleotides MPMX20_00653 and MPMX20_00654 are separated by 84 nucleotides
MPMX20_00650: MPMX20_00650 - hypothetical protein, at 676,592 to 677,074
_00650
MPMX20_00651: MPMX20_00651 - DNA replication protein DnaC, at 677,160 to 677,897
_00651
MPMX20_00652: MPMX20_00652 - Primosomal protein 1, at 677,894 to 678,439
_00652
MPMX20_00653: MPMX20_00653 - Organic hydroperoxide resistance protein OhrB, at 678,588 to 679,016
_00653
MPMX20_00654: MPMX20_00654 - Organic hydroperoxide resistance transcriptional regulator, at 679,101 to 679,553
_00654
Position (kb) 677
678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 677.004 kb on + strand, within MPMX20_00650 at 677.039 kb on + strand at 677.049 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.121 kb on + strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 677.129 kb on - strand at 678.444 kb on - strand at 678.444 kb on - strand at 678.444 kb on - strand at 678.450 kb on - strand at 678.460 kb on - strand at 678.482 kb on + strand at 678.482 kb on + strand at 678.514 kb on - strand at 678.522 kb on - strand at 678.574 kb on - strand at 678.656 kb on + strand, within MPMX20_00653 at 678.757 kb on - strand, within MPMX20_00653 at 678.847 kb on - strand, within MPMX20_00653 at 678.856 kb on + strand, within MPMX20_00653 at 678.861 kb on - strand, within MPMX20_00653 at 678.866 kb on + strand, within MPMX20_00653 at 678.871 kb on + strand, within MPMX20_00653 at 678.871 kb on + strand, within MPMX20_00653 at 678.874 kb on - strand, within MPMX20_00653 at 678.874 kb on - strand, within MPMX20_00653 at 678.874 kb on - strand, within MPMX20_00653 at 678.879 kb on - strand, within MPMX20_00653 at 678.928 kb on - strand, within MPMX20_00653 at 679.049 kb on + strand at 679.091 kb on + strand at 679.093 kb on + strand at 679.101 kb on - strand at 679.129 kb on + strand at 679.150 kb on - strand, within MPMX20_00654 at 679.165 kb on + strand, within MPMX20_00654 at 679.165 kb on + strand, within MPMX20_00654 at 679.165 kb on + strand, within MPMX20_00654 at 679.171 kb on - strand, within MPMX20_00654 at 679.173 kb on - strand, within MPMX20_00654 at 679.173 kb on - strand, within MPMX20_00654 at 679.244 kb on + strand, within MPMX20_00654 at 679.244 kb on + strand, within MPMX20_00654 at 679.250 kb on + strand, within MPMX20_00654 at 679.252 kb on - strand, within MPMX20_00654 at 679.252 kb on - strand, within MPMX20_00654 at 679.320 kb on - strand, within MPMX20_00654 at 679.373 kb on + strand, within MPMX20_00654 at 679.381 kb on - strand, within MPMX20_00654 at 679.381 kb on - strand, within MPMX20_00654 at 679.393 kb on + strand, within MPMX20_00654
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 677,004 + MPMX20_00650 0.85 -0.2 677,039 + -0.9 677,049 + +1.5 677,121 + +0.0 677,121 + +0.7 677,121 + +0.0 677,121 + +1.4 677,121 + -0.4 677,121 + -2.3 677,121 + +0.0 677,121 + -2.9 677,121 + -1.4 677,121 + -0.5 677,121 + -0.5 677,121 + +1.3 677,121 + +0.1 677,121 + +0.2 677,121 + +2.4 677,121 + -1.2 677,121 + +0.0 677,121 + +0.3 677,129 - +1.3 677,129 - -1.8 677,129 - +2.6 677,129 - -1.8 677,129 - +1.0 677,129 - +0.2 677,129 - +0.7 677,129 - -0.2 678,444 - +0.5 678,444 - -1.1 678,444 - -0.7 678,450 - -2.0 678,460 - +0.0 678,482 + +1.0 678,482 + +0.3 678,514 - -1.3 678,522 - +1.8 678,574 - +0.4 678,656 + MPMX20_00653 0.16 -0.7 678,757 - MPMX20_00653 0.39 -0.3 678,847 - MPMX20_00653 0.60 +0.4 678,856 + MPMX20_00653 0.62 +0.8 678,861 - MPMX20_00653 0.64 +0.1 678,866 + MPMX20_00653 0.65 -1.2 678,871 + MPMX20_00653 0.66 +1.6 678,871 + MPMX20_00653 0.66 -2.7 678,874 - MPMX20_00653 0.67 -1.5 678,874 - MPMX20_00653 0.67 +6.5 678,874 - MPMX20_00653 0.67 +0.3 678,879 - MPMX20_00653 0.68 -0.2 678,928 - MPMX20_00653 0.79 +1.1 679,049 + -0.2 679,091 + -3.1 679,093 + -1.8 679,101 - +0.3 679,129 + -2.4 679,150 - MPMX20_00654 0.11 -1.2 679,165 + MPMX20_00654 0.14 -0.3 679,165 + MPMX20_00654 0.14 -0.9 679,165 + MPMX20_00654 0.14 +0.3 679,171 - MPMX20_00654 0.15 -1.9 679,173 - MPMX20_00654 0.16 +0.0 679,173 - MPMX20_00654 0.16 -1.7 679,244 + MPMX20_00654 0.32 -0.7 679,244 + MPMX20_00654 0.32 -0.4 679,250 + MPMX20_00654 0.33 +1.6 679,252 - MPMX20_00654 0.33 +1.0 679,252 - MPMX20_00654 0.33 -2.7 679,320 - MPMX20_00654 0.48 +0.4 679,373 + MPMX20_00654 0.60 -2.8 679,381 - MPMX20_00654 0.62 -0.6 679,381 - MPMX20_00654 0.62 -0.9 679,393 + MPMX20_00654 0.64 -0.7
Or see this region's nucleotide sequence