Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00642

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00641 and MPMX20_00642 overlap by 4 nucleotidesMPMX20_00642 and MPMX20_00643 are separated by 269 nucleotidesMPMX20_00643 and MPMX20_00644 overlap by 44 nucleotides MPMX20_00641: MPMX20_00641 - NAD/NADP-dependent betaine aldehyde dehydrogenase, at 665,939 to 667,405 _00641 MPMX20_00642: MPMX20_00642 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 667,402 to 668,679 _00642 MPMX20_00643: MPMX20_00643 - HTH-type transcriptional regulator FarR, at 668,949 to 669,389 _00643 MPMX20_00644: MPMX20_00644 - Methyl-accepting chemotaxis protein I, at 669,346 to 671,139 _00644 Position (kb) 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 666.421 kb on + strand, within MPMX20_00641at 666.433 kb on + strand, within MPMX20_00641at 666.472 kb on - strand, within MPMX20_00641at 666.478 kb on + strand, within MPMX20_00641at 666.562 kb on + strand, within MPMX20_00641at 666.570 kb on + strand, within MPMX20_00641at 666.578 kb on - strand, within MPMX20_00641at 666.605 kb on - strand, within MPMX20_00641at 666.605 kb on - strand, within MPMX20_00641at 666.627 kb on - strand, within MPMX20_00641at 666.673 kb on + strand, within MPMX20_00641at 666.800 kb on + strand, within MPMX20_00641at 666.800 kb on + strand, within MPMX20_00641at 666.800 kb on + strand, within MPMX20_00641at 666.800 kb on + strand, within MPMX20_00641at 666.800 kb on + strand, within MPMX20_00641at 666.808 kb on - strand, within MPMX20_00641at 666.808 kb on - strand, within MPMX20_00641at 666.808 kb on - strand, within MPMX20_00641at 666.872 kb on - strand, within MPMX20_00641at 666.883 kb on + strand, within MPMX20_00641at 666.891 kb on - strand, within MPMX20_00641at 666.891 kb on - strand, within MPMX20_00641at 666.893 kb on + strand, within MPMX20_00641at 666.924 kb on - strand, within MPMX20_00641at 666.934 kb on + strand, within MPMX20_00641at 666.956 kb on - strand, within MPMX20_00641at 666.996 kb on - strand, within MPMX20_00641at 667.006 kb on + strand, within MPMX20_00641at 667.008 kb on + strand, within MPMX20_00641at 667.009 kb on - strand, within MPMX20_00641at 667.047 kb on + strand, within MPMX20_00641at 667.157 kb on - strand, within MPMX20_00641at 667.205 kb on + strand, within MPMX20_00641at 667.321 kb on + strandat 667.336 kb on + strandat 667.336 kb on + strandat 667.344 kb on - strandat 667.499 kb on + strandat 667.593 kb on - strand, within MPMX20_00642at 667.641 kb on + strand, within MPMX20_00642at 667.641 kb on + strand, within MPMX20_00642at 667.649 kb on - strand, within MPMX20_00642at 667.655 kb on - strand, within MPMX20_00642at 667.656 kb on + strand, within MPMX20_00642at 667.728 kb on + strand, within MPMX20_00642at 667.796 kb on + strand, within MPMX20_00642at 667.804 kb on - strand, within MPMX20_00642at 667.809 kb on - strand, within MPMX20_00642at 667.817 kb on + strand, within MPMX20_00642at 667.818 kb on + strand, within MPMX20_00642at 667.883 kb on + strand, within MPMX20_00642at 667.886 kb on - strand, within MPMX20_00642at 667.886 kb on - strand, within MPMX20_00642at 667.927 kb on + strand, within MPMX20_00642at 667.927 kb on + strand, within MPMX20_00642at 667.992 kb on - strand, within MPMX20_00642at 668.007 kb on - strand, within MPMX20_00642at 668.009 kb on + strand, within MPMX20_00642at 668.017 kb on - strand, within MPMX20_00642at 668.017 kb on - strand, within MPMX20_00642at 668.031 kb on + strand, within MPMX20_00642at 668.031 kb on + strand, within MPMX20_00642at 668.031 kb on + strand, within MPMX20_00642at 668.039 kb on - strand, within MPMX20_00642at 668.039 kb on - strand, within MPMX20_00642at 668.039 kb on - strand, within MPMX20_00642at 668.123 kb on + strand, within MPMX20_00642at 668.145 kb on + strand, within MPMX20_00642at 668.153 kb on - strand, within MPMX20_00642at 668.153 kb on - strand, within MPMX20_00642at 668.217 kb on - strand, within MPMX20_00642at 668.235 kb on + strand, within MPMX20_00642at 668.243 kb on - strand, within MPMX20_00642at 668.243 kb on - strand, within MPMX20_00642at 668.251 kb on - strand, within MPMX20_00642at 668.300 kb on - strand, within MPMX20_00642at 668.331 kb on + strand, within MPMX20_00642at 668.331 kb on + strand, within MPMX20_00642at 668.462 kb on + strand, within MPMX20_00642at 668.470 kb on - strand, within MPMX20_00642at 668.523 kb on + strand, within MPMX20_00642at 668.529 kb on - strand, within MPMX20_00642at 668.531 kb on - strand, within MPMX20_00642at 668.544 kb on + strand, within MPMX20_00642at 668.551 kb on + strand, within MPMX20_00642at 668.551 kb on + strand, within MPMX20_00642at 668.599 kb on - strandat 668.624 kb on - strandat 668.682 kb on + strandat 668.902 kb on - strandat 669.039 kb on + strand, within MPMX20_00643at 669.047 kb on - strand, within MPMX20_00643at 669.160 kb on - strand, within MPMX20_00643at 669.223 kb on + strand, within MPMX20_00643at 669.238 kb on + strand, within MPMX20_00643at 669.238 kb on + strand, within MPMX20_00643at 669.246 kb on - strand, within MPMX20_00643at 669.246 kb on - strand, within MPMX20_00643at 669.250 kb on - strand, within MPMX20_00643at 669.255 kb on - strand, within MPMX20_00643at 669.348 kb on + strandat 669.370 kb on - strandat 669.370 kb on - strandat 669.370 kb on - strandat 669.511 kb on - strandat 669.511 kb on - strandat 669.548 kb on - strand, within MPMX20_00644at 669.624 kb on + strand, within MPMX20_00644at 669.644 kb on + strand, within MPMX20_00644at 669.663 kb on - strand, within MPMX20_00644

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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666,421 + MPMX20_00641 0.33 -0.7
666,433 + MPMX20_00641 0.34 -1.4
666,472 - MPMX20_00641 0.36 -2.5
666,478 + MPMX20_00641 0.37 +0.5
666,562 + MPMX20_00641 0.42 -0.8
666,570 + MPMX20_00641 0.43 +0.2
666,578 - MPMX20_00641 0.44 -1.6
666,605 - MPMX20_00641 0.45 -1.2
666,605 - MPMX20_00641 0.45 -1.8
666,627 - MPMX20_00641 0.47 -3.4
666,673 + MPMX20_00641 0.50 -0.6
666,800 + MPMX20_00641 0.59 -2.9
666,800 + MPMX20_00641 0.59 -3.3
666,800 + MPMX20_00641 0.59 +6.0
666,800 + MPMX20_00641 0.59 -0.2
666,800 + MPMX20_00641 0.59 -2.4
666,808 - MPMX20_00641 0.59 -2.3
666,808 - MPMX20_00641 0.59 -1.8
666,808 - MPMX20_00641 0.59 -0.2
666,872 - MPMX20_00641 0.64 -0.7
666,883 + MPMX20_00641 0.64 +0.7
666,891 - MPMX20_00641 0.65 -2.1
666,891 - MPMX20_00641 0.65 -2.4
666,893 + MPMX20_00641 0.65 -1.3
666,924 - MPMX20_00641 0.67 -0.8
666,934 + MPMX20_00641 0.68 +0.8
666,956 - MPMX20_00641 0.69 +1.3
666,996 - MPMX20_00641 0.72 -2.2
667,006 + MPMX20_00641 0.73 +1.6
667,008 + MPMX20_00641 0.73 -1.3
667,009 - MPMX20_00641 0.73 -1.3
667,047 + MPMX20_00641 0.76 +1.2
667,157 - MPMX20_00641 0.83 -0.2
667,205 + MPMX20_00641 0.86 -2.1
667,321 + -0.4
667,336 + -2.9
667,336 + -0.8
667,344 - +1.1
667,499 + -0.9
667,593 - MPMX20_00642 0.15 +2.0
667,641 + MPMX20_00642 0.19 +0.8
667,641 + MPMX20_00642 0.19 -0.7
667,649 - MPMX20_00642 0.19 -1.2
667,655 - MPMX20_00642 0.20 -0.3
667,656 + MPMX20_00642 0.20 +0.1
667,728 + MPMX20_00642 0.26 +3.4
667,796 + MPMX20_00642 0.31 -2.5
667,804 - MPMX20_00642 0.31 -0.4
667,809 - MPMX20_00642 0.32 -1.2
667,817 + MPMX20_00642 0.32 +0.9
667,818 + MPMX20_00642 0.33 -2.7
667,883 + MPMX20_00642 0.38 -1.4
667,886 - MPMX20_00642 0.38 +0.4
667,886 - MPMX20_00642 0.38 +0.1
667,927 + MPMX20_00642 0.41 -2.2
667,927 + MPMX20_00642 0.41 -0.1
667,992 - MPMX20_00642 0.46 -0.8
668,007 - MPMX20_00642 0.47 +1.1
668,009 + MPMX20_00642 0.47 -2.8
668,017 - MPMX20_00642 0.48 -2.6
668,017 - MPMX20_00642 0.48 +0.3
668,031 + MPMX20_00642 0.49 -1.3
668,031 + MPMX20_00642 0.49 +0.6
668,031 + MPMX20_00642 0.49 -0.1
668,039 - MPMX20_00642 0.50 -1.9
668,039 - MPMX20_00642 0.50 -0.6
668,039 - MPMX20_00642 0.50 -1.6
668,123 + MPMX20_00642 0.56 -0.1
668,145 + MPMX20_00642 0.58 +2.1
668,153 - MPMX20_00642 0.59 -3.7
668,153 - MPMX20_00642 0.59 +3.1
668,217 - MPMX20_00642 0.64 +1.9
668,235 + MPMX20_00642 0.65 -1.0
668,243 - MPMX20_00642 0.66 -1.5
668,243 - MPMX20_00642 0.66 -0.3
668,251 - MPMX20_00642 0.66 -0.1
668,300 - MPMX20_00642 0.70 -2.5
668,331 + MPMX20_00642 0.73 -3.6
668,331 + MPMX20_00642 0.73 -0.2
668,462 + MPMX20_00642 0.83 -2.2
668,470 - MPMX20_00642 0.84 -0.9
668,523 + MPMX20_00642 0.88 -1.1
668,529 - MPMX20_00642 0.88 +0.4
668,531 - MPMX20_00642 0.88 -1.3
668,544 + MPMX20_00642 0.89 -0.4
668,551 + MPMX20_00642 0.90 +0.1
668,551 + MPMX20_00642 0.90 +0.6
668,599 - -0.2
668,624 - +0.6
668,682 + -2.2
668,902 - +1.1
669,039 + MPMX20_00643 0.20 +1.0
669,047 - MPMX20_00643 0.22 +0.6
669,160 - MPMX20_00643 0.48 +3.9
669,223 + MPMX20_00643 0.62 +0.3
669,238 + MPMX20_00643 0.66 +1.8
669,238 + MPMX20_00643 0.66 +0.3
669,246 - MPMX20_00643 0.67 +2.0
669,246 - MPMX20_00643 0.67 +4.2
669,250 - MPMX20_00643 0.68 -0.5
669,255 - MPMX20_00643 0.69 +2.4
669,348 + +3.3
669,370 - +3.2
669,370 - +2.6
669,370 - +3.0
669,511 - +3.1
669,511 - +0.3
669,548 - MPMX20_00644 0.11 -1.4
669,624 + MPMX20_00644 0.15 -2.1
669,644 + MPMX20_00644 0.17 +1.2
669,663 - MPMX20_00644 0.18 -0.4

Or see this region's nucleotide sequence