Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00539

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00538 and MPMX20_00539 are separated by 128 nucleotidesMPMX20_00539 and MPMX20_00540 are separated by 392 nucleotides MPMX20_00538: MPMX20_00538 - PTS system trehalose-specific EIIBC component, at 557,554 to 558,972 _00538 MPMX20_00539: MPMX20_00539 - HTH-type transcriptional regulator TreR, at 559,101 to 560,048 _00539 MPMX20_00540: MPMX20_00540 - Magnesium-transporting ATPase, P-type 1, at 560,441 to 563,149 _00540 Position (kb) 559 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9 10 11 12at 558.171 kb on + strand, within MPMX20_00538at 558.171 kb on + strand, within MPMX20_00538at 558.171 kb on + strand, within MPMX20_00538at 558.179 kb on + strand, within MPMX20_00538at 558.179 kb on - strand, within MPMX20_00538at 558.179 kb on - strand, within MPMX20_00538at 558.179 kb on - strand, within MPMX20_00538at 558.203 kb on - strand, within MPMX20_00538at 558.209 kb on - strand, within MPMX20_00538at 558.214 kb on - strand, within MPMX20_00538at 558.260 kb on - strand, within MPMX20_00538at 558.275 kb on + strand, within MPMX20_00538at 558.310 kb on + strand, within MPMX20_00538at 558.318 kb on - strand, within MPMX20_00538at 558.326 kb on - strand, within MPMX20_00538at 558.333 kb on - strand, within MPMX20_00538at 558.438 kb on + strand, within MPMX20_00538at 558.438 kb on + strand, within MPMX20_00538at 558.446 kb on - strand, within MPMX20_00538at 558.502 kb on + strand, within MPMX20_00538at 558.510 kb on - strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.524 kb on + strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.532 kb on - strand, within MPMX20_00538at 558.564 kb on - strand, within MPMX20_00538at 558.572 kb on - strand, within MPMX20_00538at 558.587 kb on + strand, within MPMX20_00538at 558.594 kb on - strand, within MPMX20_00538at 558.599 kb on - strand, within MPMX20_00538at 558.602 kb on + strand, within MPMX20_00538at 558.698 kb on + strand, within MPMX20_00538at 558.762 kb on + strand, within MPMX20_00538at 558.779 kb on + strand, within MPMX20_00538at 558.784 kb on + strand, within MPMX20_00538at 558.787 kb on - strand, within MPMX20_00538at 558.808 kb on + strand, within MPMX20_00538at 558.808 kb on + strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.816 kb on - strand, within MPMX20_00538at 558.848 kb on + strandat 558.856 kb on - strandat 558.856 kb on - strandat 558.988 kb on - strandat 558.999 kb on - strandat 559.009 kb on - strandat 559.028 kb on - strandat 559.030 kb on - strandat 559.136 kb on + strandat 559.136 kb on + strandat 559.136 kb on + strandat 559.174 kb on - strandat 559.208 kb on - strand, within MPMX20_00539at 559.234 kb on + strand, within MPMX20_00539at 559.234 kb on + strand, within MPMX20_00539at 559.279 kb on + strand, within MPMX20_00539at 559.333 kb on + strand, within MPMX20_00539at 559.338 kb on + strand, within MPMX20_00539at 559.341 kb on - strand, within MPMX20_00539at 559.343 kb on + strand, within MPMX20_00539at 559.343 kb on + strand, within MPMX20_00539at 559.379 kb on + strand, within MPMX20_00539at 559.379 kb on + strand, within MPMX20_00539at 559.391 kb on + strand, within MPMX20_00539at 559.394 kb on - strand, within MPMX20_00539at 559.423 kb on + strand, within MPMX20_00539at 559.449 kb on + strand, within MPMX20_00539at 559.462 kb on - strand, within MPMX20_00539at 559.521 kb on + strand, within MPMX20_00539at 559.553 kb on + strand, within MPMX20_00539at 559.555 kb on + strand, within MPMX20_00539at 559.568 kb on + strand, within MPMX20_00539at 559.604 kb on - strand, within MPMX20_00539at 559.606 kb on + strand, within MPMX20_00539at 559.641 kb on - strand, within MPMX20_00539at 559.657 kb on - strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.679 kb on + strand, within MPMX20_00539at 559.708 kb on + strand, within MPMX20_00539at 559.738 kb on + strand, within MPMX20_00539at 559.767 kb on + strand, within MPMX20_00539at 559.775 kb on - strand, within MPMX20_00539at 559.781 kb on + strand, within MPMX20_00539at 559.800 kb on + strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.808 kb on - strand, within MPMX20_00539at 559.909 kb on - strand, within MPMX20_00539at 560.013 kb on - strandat 560.057 kb on - strandat 560.075 kb on - strandat 560.077 kb on + strandat 560.077 kb on + strandat 560.087 kb on + strandat 560.087 kb on + strandat 560.087 kb on + strandat 560.095 kb on - strandat 560.095 kb on - strandat 560.102 kb on - strandat 560.116 kb on + strandat 560.152 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.154 kb on + strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.162 kb on - strandat 560.188 kb on + strandat 560.188 kb on + strandat 560.194 kb on + strandat 560.194 kb on + strandat 560.194 kb on + strandat 560.195 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.202 kb on - strandat 560.242 kb on + strandat 560.310 kb on - strandat 560.371 kb on - strandat 560.489 kb on - strandat 560.499 kb on + strandat 560.499 kb on + strandat 560.507 kb on - strandat 560.542 kb on - strandat 560.566 kb on + strandat 560.566 kb on + strandat 560.619 kb on + strandat 560.683 kb on - strandat 560.711 kb on + strandat 560.726 kb on + strand, within MPMX20_00540at 560.734 kb on - strand, within MPMX20_00540at 560.742 kb on + strand, within MPMX20_00540at 560.750 kb on - strand, within MPMX20_00540at 560.761 kb on + strand, within MPMX20_00540at 560.769 kb on - strand, within MPMX20_00540at 560.819 kb on + strand, within MPMX20_00540at 560.842 kb on + strand, within MPMX20_00540at 560.851 kb on + strand, within MPMX20_00540at 560.859 kb on - strand, within MPMX20_00540at 560.877 kb on - strand, within MPMX20_00540at 560.881 kb on - strand, within MPMX20_00540at 560.895 kb on + strand, within MPMX20_00540at 560.959 kb on + strand, within MPMX20_00540at 560.959 kb on + strand, within MPMX20_00540at 560.964 kb on + strand, within MPMX20_00540at 560.964 kb on + strand, within MPMX20_00540at 560.967 kb on - strand, within MPMX20_00540at 560.972 kb on - strand, within MPMX20_00540at 560.972 kb on - strand, within MPMX20_00540at 561.033 kb on - strand, within MPMX20_00540at 561.038 kb on + strand, within MPMX20_00540

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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558,171 + MPMX20_00538 0.43 +0.4
558,171 + MPMX20_00538 0.43 +0.7
558,171 + MPMX20_00538 0.43 +2.1
558,179 + MPMX20_00538 0.44 +1.6
558,179 - MPMX20_00538 0.44 -2.1
558,179 - MPMX20_00538 0.44 -0.8
558,179 - MPMX20_00538 0.44 -0.2
558,203 - MPMX20_00538 0.46 +0.8
558,209 - MPMX20_00538 0.46 +1.0
558,214 - MPMX20_00538 0.47 +0.9
558,260 - MPMX20_00538 0.50 -0.0
558,275 + MPMX20_00538 0.51 +1.9
558,310 + MPMX20_00538 0.53 +1.6
558,318 - MPMX20_00538 0.54 +1.6
558,326 - MPMX20_00538 0.54 -1.3
558,333 - MPMX20_00538 0.55 -0.4
558,438 + MPMX20_00538 0.62 +0.6
558,438 + MPMX20_00538 0.62 +0.2
558,446 - MPMX20_00538 0.63 -0.5
558,502 + MPMX20_00538 0.67 -1.1
558,510 - MPMX20_00538 0.67 +2.3
558,524 + MPMX20_00538 0.68 +1.1
558,524 + MPMX20_00538 0.68 -1.9
558,524 + MPMX20_00538 0.68 -0.6
558,524 + MPMX20_00538 0.68 -0.5
558,532 - MPMX20_00538 0.69 +0.3
558,532 - MPMX20_00538 0.69 -1.9
558,532 - MPMX20_00538 0.69 -0.5
558,532 - MPMX20_00538 0.69 -3.0
558,532 - MPMX20_00538 0.69 +0.7
558,532 - MPMX20_00538 0.69 -0.9
558,564 - MPMX20_00538 0.71 -1.9
558,572 - MPMX20_00538 0.72 +0.8
558,587 + MPMX20_00538 0.73 -0.0
558,594 - MPMX20_00538 0.73 +0.1
558,599 - MPMX20_00538 0.74 +0.9
558,602 + MPMX20_00538 0.74 +1.0
558,698 + MPMX20_00538 0.81 -0.5
558,762 + MPMX20_00538 0.85 -2.9
558,779 + MPMX20_00538 0.86 +0.6
558,784 + MPMX20_00538 0.87 -0.1
558,787 - MPMX20_00538 0.87 -1.2
558,808 + MPMX20_00538 0.88 -2.1
558,808 + MPMX20_00538 0.88 -0.7
558,816 - MPMX20_00538 0.89 +0.6
558,816 - MPMX20_00538 0.89 +0.7
558,816 - MPMX20_00538 0.89 +0.4
558,816 - MPMX20_00538 0.89 +0.1
558,848 + -1.7
558,856 - +1.7
558,856 - -1.2
558,988 - -0.9
558,999 - -1.8
559,009 - -2.6
559,028 - -2.3
559,030 - -0.2
559,136 + -3.2
559,136 + -0.1
559,136 + +1.1
559,174 - -1.9
559,208 - MPMX20_00539 0.11 -0.5
559,234 + MPMX20_00539 0.14 -2.3
559,234 + MPMX20_00539 0.14 +2.9
559,279 + MPMX20_00539 0.19 -3.1
559,333 + MPMX20_00539 0.24 +0.2
559,338 + MPMX20_00539 0.25 -1.6
559,341 - MPMX20_00539 0.25 -1.9
559,343 + MPMX20_00539 0.26 -2.5
559,343 + MPMX20_00539 0.26 +1.1
559,379 + MPMX20_00539 0.29 -3.2
559,379 + MPMX20_00539 0.29 -3.5
559,391 + MPMX20_00539 0.31 -3.2
559,394 - MPMX20_00539 0.31 +2.2
559,423 + MPMX20_00539 0.34 +0.1
559,449 + MPMX20_00539 0.37 -3.0
559,462 - MPMX20_00539 0.38 +0.1
559,521 + MPMX20_00539 0.44 +0.4
559,553 + MPMX20_00539 0.48 -0.8
559,555 + MPMX20_00539 0.48 -1.1
559,568 + MPMX20_00539 0.49 -0.8
559,604 - MPMX20_00539 0.53 -2.2
559,606 + MPMX20_00539 0.53 +1.0
559,641 - MPMX20_00539 0.57 -0.1
559,657 - MPMX20_00539 0.59 -1.0
559,679 + MPMX20_00539 0.61 -2.4
559,679 + MPMX20_00539 0.61 -1.7
559,679 + MPMX20_00539 0.61 +1.5
559,708 + MPMX20_00539 0.64 -1.7
559,738 + MPMX20_00539 0.67 -1.4
559,767 + MPMX20_00539 0.70 -1.7
559,775 - MPMX20_00539 0.71 -1.1
559,781 + MPMX20_00539 0.72 -1.0
559,800 + MPMX20_00539 0.74 -2.8
559,808 - MPMX20_00539 0.75 -2.5
559,808 - MPMX20_00539 0.75 -1.6
559,808 - MPMX20_00539 0.75 +1.6
559,909 - MPMX20_00539 0.85 -0.6
560,013 - -0.8
560,057 - -2.1
560,075 - +1.0
560,077 + -1.2
560,077 + -1.2
560,087 + +1.6
560,087 + -0.9
560,087 + -3.7
560,095 - -1.3
560,095 - +1.7
560,102 - -1.8
560,116 + +1.0
560,152 + +0.0
560,154 + -1.4
560,154 + +2.3
560,154 + +0.4
560,154 + +0.7
560,154 + -1.3
560,154 + -2.0
560,154 + -1.6
560,154 + -2.8
560,162 - -0.8
560,162 - -0.4
560,162 - +1.6
560,162 - -2.1
560,162 - +1.6
560,162 - -1.0
560,162 - +0.7
560,162 - -0.7
560,162 - +1.1
560,162 - +2.7
560,162 - -0.9
560,162 - -1.2
560,162 - +0.1
560,162 - -0.7
560,188 + +1.6
560,188 + -0.2
560,194 + -1.3
560,194 + -0.4
560,194 + -0.0
560,195 - -0.1
560,202 - -1.8
560,202 - -1.4
560,202 - -1.4
560,202 - +1.6
560,202 - +0.3
560,242 + -1.7
560,310 - -2.4
560,371 - +0.2
560,489 - -1.6
560,499 + +0.7
560,499 + +12.0
560,507 - -1.0
560,542 - -1.3
560,566 + -3.5
560,566 + -1.0
560,619 + -0.0
560,683 - -2.0
560,711 + -1.4
560,726 + MPMX20_00540 0.11 -0.4
560,734 - MPMX20_00540 0.11 -0.0
560,742 + MPMX20_00540 0.11 -0.7
560,750 - MPMX20_00540 0.11 -0.8
560,761 + MPMX20_00540 0.12 -0.2
560,769 - MPMX20_00540 0.12 +0.2
560,819 + MPMX20_00540 0.14 -2.8
560,842 + MPMX20_00540 0.15 +1.0
560,851 + MPMX20_00540 0.15 +0.2
560,859 - MPMX20_00540 0.15 +0.4
560,877 - MPMX20_00540 0.16 -0.4
560,881 - MPMX20_00540 0.16 +0.8
560,895 + MPMX20_00540 0.17 -0.2
560,959 + MPMX20_00540 0.19 -0.3
560,959 + MPMX20_00540 0.19 -1.8
560,964 + MPMX20_00540 0.19 +0.6
560,964 + MPMX20_00540 0.19 -1.8
560,967 - MPMX20_00540 0.19 -0.4
560,972 - MPMX20_00540 0.20 +0.5
560,972 - MPMX20_00540 0.20 +0.7
561,033 - MPMX20_00540 0.22 -2.6
561,038 + MPMX20_00540 0.22 -2.0

Or see this region's nucleotide sequence