Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00529

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00528 and MPMX20_00529 are separated by 77 nucleotidesMPMX20_00529 and MPMX20_00530 are separated by 277 nucleotidesMPMX20_00530 and MPMX20_00531 are separated by 138 nucleotides MPMX20_00528: MPMX20_00528 - putative licABCH operon regulator, at 543,922 to 545,832 _00528 MPMX20_00529: MPMX20_00529 - Antitoxin RelB, at 545,910 to 546,152 _00529 MPMX20_00530: MPMX20_00530 - Anaerobic ribonucleoside-triphosphate reductase-activating protein, at 546,430 to 546,894 _00530 MPMX20_00531: MPMX20_00531 - Anaerobic ribonucleoside-triphosphate reductase, at 547,033 to 549,171 _00531 Position (kb) 545 546 547Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 544.939 kb on + strand, within MPMX20_00528at 544.966 kb on - strand, within MPMX20_00528at 544.986 kb on + strand, within MPMX20_00528at 544.987 kb on + strand, within MPMX20_00528at 544.994 kb on - strand, within MPMX20_00528at 544.995 kb on - strand, within MPMX20_00528at 544.995 kb on - strand, within MPMX20_00528at 545.005 kb on + strand, within MPMX20_00528at 545.005 kb on + strand, within MPMX20_00528at 545.179 kb on + strand, within MPMX20_00528at 545.187 kb on - strand, within MPMX20_00528at 545.187 kb on - strand, within MPMX20_00528at 545.210 kb on - strand, within MPMX20_00528at 545.219 kb on + strand, within MPMX20_00528at 545.219 kb on + strand, within MPMX20_00528at 545.219 kb on + strand, within MPMX20_00528at 545.227 kb on - strand, within MPMX20_00528at 545.227 kb on - strand, within MPMX20_00528at 545.227 kb on - strand, within MPMX20_00528at 545.281 kb on + strand, within MPMX20_00528at 545.286 kb on + strand, within MPMX20_00528at 545.360 kb on + strand, within MPMX20_00528at 545.382 kb on - strand, within MPMX20_00528at 545.383 kb on - strand, within MPMX20_00528at 545.462 kb on + strand, within MPMX20_00528at 545.481 kb on + strand, within MPMX20_00528at 545.481 kb on + strand, within MPMX20_00528at 545.481 kb on + strand, within MPMX20_00528at 545.484 kb on - strand, within MPMX20_00528at 545.489 kb on - strand, within MPMX20_00528at 545.489 kb on - strand, within MPMX20_00528at 545.489 kb on - strand, within MPMX20_00528at 545.544 kb on + strand, within MPMX20_00528at 545.567 kb on + strand, within MPMX20_00528at 545.585 kb on + strand, within MPMX20_00528at 545.593 kb on - strand, within MPMX20_00528at 545.593 kb on - strand, within MPMX20_00528at 545.593 kb on - strand, within MPMX20_00528at 545.613 kb on + strand, within MPMX20_00528at 545.621 kb on - strand, within MPMX20_00528at 545.621 kb on - strand, within MPMX20_00528at 545.634 kb on + strand, within MPMX20_00528at 545.637 kb on + strand, within MPMX20_00528at 545.645 kb on - strandat 545.759 kb on + strandat 545.764 kb on + strandat 545.767 kb on - strandat 545.962 kb on - strand, within MPMX20_00529at 545.962 kb on - strand, within MPMX20_00529at 545.962 kb on - strand, within MPMX20_00529at 546.058 kb on + strand, within MPMX20_00529at 546.058 kb on + strand, within MPMX20_00529at 546.060 kb on + strand, within MPMX20_00529at 546.060 kb on + strand, within MPMX20_00529at 546.070 kb on + strand, within MPMX20_00529at 546.083 kb on + strand, within MPMX20_00529at 546.083 kb on + strand, within MPMX20_00529at 546.083 kb on + strand, within MPMX20_00529at 546.089 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.091 kb on - strand, within MPMX20_00529at 546.093 kb on + strand, within MPMX20_00529at 546.101 kb on - strand, within MPMX20_00529at 546.101 kb on - strand, within MPMX20_00529at 546.124 kb on - strand, within MPMX20_00529at 546.138 kb on - strandat 546.144 kb on - strandat 546.173 kb on + strandat 546.181 kb on + strandat 546.185 kb on + strandat 546.185 kb on + strandat 546.189 kb on - strandat 546.193 kb on - strandat 546.193 kb on - strandat 546.195 kb on + strandat 546.203 kb on - strandat 546.203 kb on - strandat 546.245 kb on - strandat 546.249 kb on + strandat 546.249 kb on + strandat 546.249 kb on + strandat 546.257 kb on - strandat 546.257 kb on - strandat 546.263 kb on - strandat 546.342 kb on + strandat 546.345 kb on - strandat 546.347 kb on + strandat 546.350 kb on - strandat 546.350 kb on - strandat 546.350 kb on - strandat 546.356 kb on - strandat 546.362 kb on + strandat 546.370 kb on - strandat 546.376 kb on + strandat 546.428 kb on - strandat 546.447 kb on + strandat 546.475 kb on - strandat 546.475 kb on - strandat 546.475 kb on - strandat 546.485 kb on - strand, within MPMX20_00530at 546.494 kb on - strand, within MPMX20_00530at 546.511 kb on - strand, within MPMX20_00530at 546.524 kb on - strand, within MPMX20_00530at 546.532 kb on + strand, within MPMX20_00530at 546.544 kb on + strand, within MPMX20_00530at 546.547 kb on - strand, within MPMX20_00530at 546.552 kb on - strand, within MPMX20_00530at 546.552 kb on - strand, within MPMX20_00530at 546.557 kb on - strand, within MPMX20_00530at 546.562 kb on - strand, within MPMX20_00530at 546.562 kb on - strand, within MPMX20_00530at 546.590 kb on + strand, within MPMX20_00530at 546.633 kb on + strand, within MPMX20_00530at 546.674 kb on + strand, within MPMX20_00530at 546.692 kb on - strand, within MPMX20_00530at 546.771 kb on - strand, within MPMX20_00530at 546.818 kb on - strand, within MPMX20_00530at 546.820 kb on + strand, within MPMX20_00530at 546.872 kb on + strandat 546.880 kb on - strandat 546.885 kb on - strandat 546.885 kb on - strandat 546.902 kb on + strandat 546.908 kb on + strandat 546.910 kb on - strandat 546.910 kb on - strandat 546.933 kb on + strandat 546.933 kb on + strandat 546.933 kb on + strandat 546.933 kb on + strandat 546.941 kb on - strandat 546.941 kb on - strandat 546.999 kb on - strandat 546.999 kb on - strandat 547.003 kb on + strandat 547.004 kb on + strandat 547.004 kb on + strandat 547.010 kb on + strandat 547.011 kb on - strandat 547.018 kb on - strandat 547.071 kb on + strandat 547.084 kb on - strandat 547.084 kb on - strandat 547.118 kb on - strandat 547.118 kb on - strandat 547.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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544,939 + MPMX20_00528 0.53 -2.2
544,966 - MPMX20_00528 0.55 -3.3
544,986 + MPMX20_00528 0.56 -0.4
544,987 + MPMX20_00528 0.56 +2.2
544,994 - MPMX20_00528 0.56 +1.6
544,995 - MPMX20_00528 0.56 -3.7
544,995 - MPMX20_00528 0.56 -2.3
545,005 + MPMX20_00528 0.57 -2.6
545,005 + MPMX20_00528 0.57 -0.0
545,179 + MPMX20_00528 0.66 +0.2
545,187 - MPMX20_00528 0.66 +0.2
545,187 - MPMX20_00528 0.66 +1.5
545,210 - MPMX20_00528 0.67 -2.1
545,219 + MPMX20_00528 0.68 -0.6
545,219 + MPMX20_00528 0.68 +0.6
545,219 + MPMX20_00528 0.68 +1.1
545,227 - MPMX20_00528 0.68 +0.1
545,227 - MPMX20_00528 0.68 -1.5
545,227 - MPMX20_00528 0.68 -0.9
545,281 + MPMX20_00528 0.71 +1.6
545,286 + MPMX20_00528 0.71 -3.5
545,360 + MPMX20_00528 0.75 -0.1
545,382 - MPMX20_00528 0.76 -0.8
545,383 - MPMX20_00528 0.76 +1.0
545,462 + MPMX20_00528 0.81 -2.8
545,481 + MPMX20_00528 0.82 -3.8
545,481 + MPMX20_00528 0.82 +2.0
545,481 + MPMX20_00528 0.82 -0.6
545,484 - MPMX20_00528 0.82 -0.4
545,489 - MPMX20_00528 0.82 -2.5
545,489 - MPMX20_00528 0.82 +3.1
545,489 - MPMX20_00528 0.82 -0.6
545,544 + MPMX20_00528 0.85 +1.9
545,567 + MPMX20_00528 0.86 -2.4
545,585 + MPMX20_00528 0.87 +2.4
545,593 - MPMX20_00528 0.87 +1.6
545,593 - MPMX20_00528 0.87 +0.8
545,593 - MPMX20_00528 0.87 +2.9
545,613 + MPMX20_00528 0.88 +1.6
545,621 - MPMX20_00528 0.89 +0.6
545,621 - MPMX20_00528 0.89 -0.2
545,634 + MPMX20_00528 0.90 -0.8
545,637 + MPMX20_00528 0.90 +0.2
545,645 - -1.5
545,759 + +2.0
545,764 + +0.3
545,767 - +0.6
545,962 - MPMX20_00529 0.21 +1.6
545,962 - MPMX20_00529 0.21 +0.2
545,962 - MPMX20_00529 0.21 +0.6
546,058 + MPMX20_00529 0.61 +0.6
546,058 + MPMX20_00529 0.61 -0.6
546,060 + MPMX20_00529 0.62 -0.8
546,060 + MPMX20_00529 0.62 +0.7
546,070 + MPMX20_00529 0.66 -2.7
546,083 + MPMX20_00529 0.71 -0.5
546,083 + MPMX20_00529 0.71 +1.4
546,083 + MPMX20_00529 0.71 +4.7
546,089 - MPMX20_00529 0.74 -0.7
546,091 - MPMX20_00529 0.74 -1.4
546,091 - MPMX20_00529 0.74 -0.6
546,091 - MPMX20_00529 0.74 +2.5
546,091 - MPMX20_00529 0.74 +0.3
546,091 - MPMX20_00529 0.74 -0.6
546,093 + MPMX20_00529 0.75 -1.0
546,101 - MPMX20_00529 0.79 -1.2
546,101 - MPMX20_00529 0.79 +0.6
546,124 - MPMX20_00529 0.88 +0.2
546,138 - -1.3
546,144 - +0.3
546,173 + -0.8
546,181 + -0.4
546,185 + -3.3
546,185 + -0.3
546,189 - +0.7
546,193 - -2.8
546,193 - +0.8
546,195 + -0.6
546,203 - +0.1
546,203 - +0.6
546,245 - +0.3
546,249 + +1.1
546,249 + -1.0
546,249 + -2.2
546,257 - +0.5
546,257 - +2.3
546,263 - -0.8
546,342 + +0.1
546,345 - -3.5
546,347 + +1.0
546,350 - -0.0
546,350 - +0.5
546,350 - -0.6
546,356 - -0.7
546,362 + +0.8
546,370 - -1.2
546,376 + -0.2
546,428 - +1.2
546,447 + -1.6
546,475 - -0.6
546,475 - -1.2
546,475 - -1.5
546,485 - MPMX20_00530 0.12 +0.2
546,494 - MPMX20_00530 0.14 -0.3
546,511 - MPMX20_00530 0.17 -0.7
546,524 - MPMX20_00530 0.20 +1.0
546,532 + MPMX20_00530 0.22 -3.5
546,544 + MPMX20_00530 0.25 +1.3
546,547 - MPMX20_00530 0.25 -0.8
546,552 - MPMX20_00530 0.26 +0.1
546,552 - MPMX20_00530 0.26 -0.8
546,557 - MPMX20_00530 0.27 -1.5
546,562 - MPMX20_00530 0.28 -0.7
546,562 - MPMX20_00530 0.28 +0.2
546,590 + MPMX20_00530 0.34 -0.6
546,633 + MPMX20_00530 0.44 -0.4
546,674 + MPMX20_00530 0.52 -1.0
546,692 - MPMX20_00530 0.56 -0.8
546,771 - MPMX20_00530 0.73 +0.1
546,818 - MPMX20_00530 0.83 +0.7
546,820 + MPMX20_00530 0.84 -0.0
546,872 + -1.7
546,880 - -2.2
546,885 - -3.2
546,885 - +0.6
546,902 + -1.7
546,908 + -0.2
546,910 - -0.3
546,910 - -1.3
546,933 + -0.4
546,933 + -1.7
546,933 + -1.0
546,933 + -1.0
546,941 - +0.2
546,941 - -3.4
546,999 - +2.1
546,999 - +0.1
547,003 + -0.9
547,004 + -0.2
547,004 + +0.4
547,010 + -1.3
547,011 - -1.3
547,018 - -0.9
547,071 + -1.5
547,084 - +0.2
547,084 - -1.9
547,118 - -0.9
547,118 - +1.0
547,128 - -0.6

Or see this region's nucleotide sequence