Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00510

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00509 and MPMX20_00510 are separated by 13 nucleotidesMPMX20_00510 and MPMX20_00511 overlap by 14 nucleotides MPMX20_00509: MPMX20_00509 - Fructose import ATP-binding protein FruK, at 526,121 to 527,623 _00509 MPMX20_00510: MPMX20_00510 - Inner membrane ABC transporter permease protein YtfT, at 527,637 to 528,659 _00510 MPMX20_00511: MPMX20_00511 - Inner membrane ABC transporter permease protein YjfF, at 528,646 to 529,647 _00511 Position (kb) 527 528 529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 526.697 kb on + strand, within MPMX20_00509at 526.709 kb on + strand, within MPMX20_00509at 526.899 kb on + strand, within MPMX20_00509at 526.902 kb on - strand, within MPMX20_00509at 526.907 kb on - strand, within MPMX20_00509at 526.954 kb on - strand, within MPMX20_00509at 527.074 kb on + strand, within MPMX20_00509at 527.082 kb on - strand, within MPMX20_00509at 527.129 kb on - strand, within MPMX20_00509at 527.147 kb on - strand, within MPMX20_00509at 527.232 kb on + strand, within MPMX20_00509at 527.239 kb on - strand, within MPMX20_00509at 527.304 kb on + strand, within MPMX20_00509at 527.304 kb on + strand, within MPMX20_00509at 527.304 kb on + strand, within MPMX20_00509at 527.312 kb on - strand, within MPMX20_00509at 527.312 kb on - strand, within MPMX20_00509at 527.349 kb on + strand, within MPMX20_00509at 527.474 kb on - strandat 527.483 kb on - strandat 527.496 kb on + strandat 527.550 kb on + strandat 527.550 kb on + strandat 527.642 kb on + strandat 527.647 kb on - strandat 527.757 kb on - strand, within MPMX20_00510at 527.882 kb on + strand, within MPMX20_00510at 527.973 kb on + strand, within MPMX20_00510at 528.060 kb on - strand, within MPMX20_00510at 528.060 kb on - strand, within MPMX20_00510at 528.108 kb on + strand, within MPMX20_00510at 528.196 kb on + strand, within MPMX20_00510at 528.196 kb on + strand, within MPMX20_00510at 528.196 kb on + strand, within MPMX20_00510at 528.196 kb on + strand, within MPMX20_00510at 528.199 kb on - strand, within MPMX20_00510at 528.199 kb on - strand, within MPMX20_00510at 528.201 kb on + strand, within MPMX20_00510at 528.204 kb on - strand, within MPMX20_00510at 528.204 kb on - strand, within MPMX20_00510at 528.239 kb on - strand, within MPMX20_00510at 528.239 kb on - strand, within MPMX20_00510at 528.276 kb on - strand, within MPMX20_00510at 528.320 kb on - strand, within MPMX20_00510at 528.327 kb on - strand, within MPMX20_00510at 528.455 kb on + strand, within MPMX20_00510at 528.579 kb on + strandat 528.587 kb on - strandat 528.677 kb on + strandat 528.689 kb on - strandat 528.704 kb on - strandat 528.796 kb on + strand, within MPMX20_00511at 528.814 kb on - strand, within MPMX20_00511at 528.862 kb on + strand, within MPMX20_00511at 528.862 kb on + strand, within MPMX20_00511at 528.862 kb on + strand, within MPMX20_00511at 528.870 kb on - strand, within MPMX20_00511at 528.870 kb on - strand, within MPMX20_00511at 528.870 kb on - strand, within MPMX20_00511at 528.961 kb on - strand, within MPMX20_00511at 529.043 kb on - strand, within MPMX20_00511at 529.090 kb on + strand, within MPMX20_00511at 529.092 kb on + strand, within MPMX20_00511at 529.098 kb on - strand, within MPMX20_00511at 529.160 kb on + strand, within MPMX20_00511at 529.186 kb on - strand, within MPMX20_00511at 529.195 kb on - strand, within MPMX20_00511at 529.209 kb on + strand, within MPMX20_00511at 529.209 kb on + strand, within MPMX20_00511at 529.348 kb on + strand, within MPMX20_00511at 529.348 kb on + strand, within MPMX20_00511at 529.349 kb on + strand, within MPMX20_00511at 529.399 kb on - strand, within MPMX20_00511at 529.404 kb on - strand, within MPMX20_00511at 529.438 kb on + strand, within MPMX20_00511at 529.438 kb on + strand, within MPMX20_00511at 529.446 kb on - strand, within MPMX20_00511at 529.446 kb on - strand, within MPMX20_00511at 529.446 kb on - strand, within MPMX20_00511at 529.472 kb on + strand, within MPMX20_00511at 529.477 kb on + strand, within MPMX20_00511at 529.480 kb on - strand, within MPMX20_00511at 529.485 kb on - strand, within MPMX20_00511at 529.485 kb on - strand, within MPMX20_00511at 529.509 kb on + strand, within MPMX20_00511at 529.511 kb on + strand, within MPMX20_00511at 529.574 kb on + strandat 529.582 kb on - strandat 529.582 kb on - strandat 529.582 kb on - strandat 529.582 kb on - strandat 529.584 kb on + strandat 529.609 kb on + strandat 529.609 kb on + strandat 529.609 kb on + strandat 529.617 kb on - strandat 529.617 kb on - strandat 529.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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526,697 + MPMX20_00509 0.38 -0.9
526,709 + MPMX20_00509 0.39 -0.9
526,899 + MPMX20_00509 0.52 +5.0
526,902 - MPMX20_00509 0.52 -0.3
526,907 - MPMX20_00509 0.52 +0.6
526,954 - MPMX20_00509 0.55 +0.3
527,074 + MPMX20_00509 0.63 -0.4
527,082 - MPMX20_00509 0.64 -1.3
527,129 - MPMX20_00509 0.67 -3.7
527,147 - MPMX20_00509 0.68 -2.4
527,232 + MPMX20_00509 0.74 +1.2
527,239 - MPMX20_00509 0.74 -0.1
527,304 + MPMX20_00509 0.79 +1.8
527,304 + MPMX20_00509 0.79 +3.3
527,304 + MPMX20_00509 0.79 +0.9
527,312 - MPMX20_00509 0.79 +1.7
527,312 - MPMX20_00509 0.79 -2.4
527,349 + MPMX20_00509 0.82 -2.5
527,474 - +1.6
527,483 - +0.3
527,496 + -0.1
527,550 + -2.7
527,550 + -0.3
527,642 + +2.0
527,647 - -0.8
527,757 - MPMX20_00510 0.12 -0.6
527,882 + MPMX20_00510 0.24 +0.1
527,973 + MPMX20_00510 0.33 -0.3
528,060 - MPMX20_00510 0.41 +2.6
528,060 - MPMX20_00510 0.41 +0.2
528,108 + MPMX20_00510 0.46 +0.8
528,196 + MPMX20_00510 0.55 -1.0
528,196 + MPMX20_00510 0.55 -2.8
528,196 + MPMX20_00510 0.55 -1.0
528,196 + MPMX20_00510 0.55 -1.9
528,199 - MPMX20_00510 0.55 -3.0
528,199 - MPMX20_00510 0.55 +2.6
528,201 + MPMX20_00510 0.55 -0.6
528,204 - MPMX20_00510 0.55 +0.7
528,204 - MPMX20_00510 0.55 -0.4
528,239 - MPMX20_00510 0.59 +2.4
528,239 - MPMX20_00510 0.59 -1.8
528,276 - MPMX20_00510 0.62 -2.4
528,320 - MPMX20_00510 0.67 -2.0
528,327 - MPMX20_00510 0.67 -1.1
528,455 + MPMX20_00510 0.80 -0.6
528,579 + -2.1
528,587 - -1.1
528,677 + -0.7
528,689 - +0.0
528,704 - -1.7
528,796 + MPMX20_00511 0.15 -1.5
528,814 - MPMX20_00511 0.17 -1.2
528,862 + MPMX20_00511 0.22 -0.7
528,862 + MPMX20_00511 0.22 +2.1
528,862 + MPMX20_00511 0.22 +1.4
528,870 - MPMX20_00511 0.22 -1.0
528,870 - MPMX20_00511 0.22 -0.8
528,870 - MPMX20_00511 0.22 -3.5
528,961 - MPMX20_00511 0.31 +1.0
529,043 - MPMX20_00511 0.40 +0.6
529,090 + MPMX20_00511 0.44 -1.9
529,092 + MPMX20_00511 0.45 +2.6
529,098 - MPMX20_00511 0.45 +2.0
529,160 + MPMX20_00511 0.51 -0.5
529,186 - MPMX20_00511 0.54 +0.0
529,195 - MPMX20_00511 0.55 -1.9
529,209 + MPMX20_00511 0.56 -2.5
529,209 + MPMX20_00511 0.56 +2.6
529,348 + MPMX20_00511 0.70 -1.2
529,348 + MPMX20_00511 0.70 +0.3
529,349 + MPMX20_00511 0.70 +0.7
529,399 - MPMX20_00511 0.75 +0.3
529,404 - MPMX20_00511 0.76 +0.6
529,438 + MPMX20_00511 0.79 -0.2
529,438 + MPMX20_00511 0.79 -0.3
529,446 - MPMX20_00511 0.80 -2.0
529,446 - MPMX20_00511 0.80 +0.5
529,446 - MPMX20_00511 0.80 +2.6
529,472 + MPMX20_00511 0.82 -1.6
529,477 + MPMX20_00511 0.83 -2.1
529,480 - MPMX20_00511 0.83 +1.1
529,485 - MPMX20_00511 0.84 -0.5
529,485 - MPMX20_00511 0.84 -2.1
529,509 + MPMX20_00511 0.86 -0.3
529,511 + MPMX20_00511 0.86 +1.1
529,574 + -0.9
529,582 - +1.6
529,582 - +0.3
529,582 - -0.9
529,582 - -1.3
529,584 + +0.8
529,609 + +0.6
529,609 + -2.3
529,609 + +1.4
529,617 - -0.2
529,617 - -3.1
529,628 + -3.5

Or see this region's nucleotide sequence