Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00476 and MPMX20_00477 are separated by 341 nucleotides MPMX20_00477 and MPMX20_00478 are separated by 6 nucleotides MPMX20_00478 and MPMX20_00479 are separated by 4 nucleotides MPMX20_00479 and MPMX20_00480 are separated by 41 nucleotides MPMX20_00480 and MPMX20_00481 are separated by 150 nucleotides
MPMX20_00476: MPMX20_00476 - hypothetical protein, at 491,406 to 491,681
_00476
MPMX20_00477: MPMX20_00477 - 30S ribosomal protein S6, at 492,023 to 492,418
_00477
MPMX20_00478: MPMX20_00478 - Primosomal replication protein N, at 492,425 to 492,739
_00478
MPMX20_00479: MPMX20_00479 - 30S ribosomal protein S18, at 492,744 to 492,971
_00479
MPMX20_00480: MPMX20_00480 - 50S ribosomal protein L9, at 493,013 to 493,462
_00480
MPMX20_00481: MPMX20_00481 - hypothetical protein, at 493,613 to 494,542
_00481
Position (kb) 492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 491.427 kb on + strand at 491.430 kb on - strand at 491.435 kb on - strand, within MPMX20_00476 at 491.435 kb on - strand, within MPMX20_00476 at 491.435 kb on - strand, within MPMX20_00476 at 491.435 kb on - strand, within MPMX20_00476 at 491.435 kb on - strand, within MPMX20_00476 at 491.464 kb on + strand, within MPMX20_00476 at 491.471 kb on + strand, within MPMX20_00476 at 491.472 kb on - strand, within MPMX20_00476 at 491.553 kb on + strand, within MPMX20_00476 at 491.564 kb on + strand, within MPMX20_00476 at 491.564 kb on + strand, within MPMX20_00476 at 491.564 kb on + strand, within MPMX20_00476 at 491.564 kb on + strand, within MPMX20_00476 at 491.564 kb on + strand, within MPMX20_00476 at 491.571 kb on + strand, within MPMX20_00476 at 491.572 kb on - strand, within MPMX20_00476 at 491.572 kb on - strand, within MPMX20_00476 at 491.572 kb on - strand, within MPMX20_00476 at 491.572 kb on - strand, within MPMX20_00476 at 491.572 kb on - strand, within MPMX20_00476 at 491.572 kb on - strand, within MPMX20_00476 at 491.572 kb on - strand, within MPMX20_00476 at 491.574 kb on - strand, within MPMX20_00476 at 491.589 kb on + strand, within MPMX20_00476 at 491.638 kb on - strand, within MPMX20_00476 at 491.638 kb on - strand, within MPMX20_00476 at 491.638 kb on - strand, within MPMX20_00476 at 491.638 kb on - strand, within MPMX20_00476 at 491.638 kb on - strand, within MPMX20_00476 at 491.640 kb on + strand, within MPMX20_00476 at 491.690 kb on + strand at 491.690 kb on + strand at 491.690 kb on + strand at 491.690 kb on + strand at 491.690 kb on + strand at 491.692 kb on + strand at 491.697 kb on + strand at 491.698 kb on - strand at 491.698 kb on - strand at 491.698 kb on - strand at 491.707 kb on + strand at 491.707 kb on + strand at 491.715 kb on - strand at 491.715 kb on - strand at 491.722 kb on - strand at 491.727 kb on - strand at 491.849 kb on + strand at 491.856 kb on - strand at 491.859 kb on + strand at 491.859 kb on + strand at 491.862 kb on - strand at 492.280 kb on + strand, within MPMX20_00477 at 492.328 kb on + strand, within MPMX20_00477 at 492.445 kb on + strand at 493.043 kb on + strand at 493.066 kb on + strand, within MPMX20_00480 at 493.072 kb on + strand, within MPMX20_00480 at 493.111 kb on + strand, within MPMX20_00480 at 493.111 kb on + strand, within MPMX20_00480 at 493.220 kb on + strand, within MPMX20_00480 at 493.378 kb on + strand, within MPMX20_00480 at 493.528 kb on - strand at 493.533 kb on + strand at 493.647 kb on + strand at 493.655 kb on - strand at 493.658 kb on + strand at 493.658 kb on + strand at 493.662 kb on + strand at 493.666 kb on - strand at 493.666 kb on - strand at 493.666 kb on - strand at 493.666 kb on - strand at 493.695 kb on - strand at 493.701 kb on - strand at 493.722 kb on + strand, within MPMX20_00481 at 493.732 kb on + strand, within MPMX20_00481
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 491,427 + +1.3 491,430 - +1.4 491,435 - MPMX20_00476 0.11 -0.0 491,435 - MPMX20_00476 0.11 +0.6 491,435 - MPMX20_00476 0.11 -0.1 491,435 - MPMX20_00476 0.11 +2.5 491,435 - MPMX20_00476 0.11 +3.1 491,464 + MPMX20_00476 0.21 -0.3 491,471 + MPMX20_00476 0.24 -0.4 491,472 - MPMX20_00476 0.24 -0.2 491,553 + MPMX20_00476 0.53 +1.7 491,564 + MPMX20_00476 0.57 +5.0 491,564 + MPMX20_00476 0.57 +1.0 491,564 + MPMX20_00476 0.57 +0.2 491,564 + MPMX20_00476 0.57 +0.6 491,564 + MPMX20_00476 0.57 +2.6 491,571 + MPMX20_00476 0.60 +0.5 491,572 - MPMX20_00476 0.60 +1.0 491,572 - MPMX20_00476 0.60 +0.3 491,572 - MPMX20_00476 0.60 +1.9 491,572 - MPMX20_00476 0.60 -1.6 491,572 - MPMX20_00476 0.60 -0.6 491,572 - MPMX20_00476 0.60 +1.3 491,572 - MPMX20_00476 0.60 -0.3 491,574 - MPMX20_00476 0.61 +0.9 491,589 + MPMX20_00476 0.66 -1.3 491,638 - MPMX20_00476 0.84 +1.0 491,638 - MPMX20_00476 0.84 +0.5 491,638 - MPMX20_00476 0.84 +3.1 491,638 - MPMX20_00476 0.84 +0.0 491,638 - MPMX20_00476 0.84 +0.6 491,640 + MPMX20_00476 0.85 +0.8 491,690 + +3.9 491,690 + +0.1 491,690 + -0.1 491,690 + +1.0 491,690 + +0.3 491,692 + +0.0 491,697 + +2.6 491,698 - +1.1 491,698 - +1.8 491,698 - +1.2 491,707 + -1.0 491,707 + -0.8 491,715 - +0.2 491,715 - -3.3 491,722 - +1.8 491,727 - -0.7 491,849 + -0.4 491,856 - +0.0 491,859 + -1.8 491,859 + -1.0 491,862 - +2.6 492,280 + MPMX20_00477 0.65 +0.3 492,328 + MPMX20_00477 0.77 -1.2 492,445 + +1.0 493,043 + +2.6 493,066 + MPMX20_00480 0.12 -0.8 493,072 + MPMX20_00480 0.13 -0.6 493,111 + MPMX20_00480 0.22 -1.3 493,111 + MPMX20_00480 0.22 +1.0 493,220 + MPMX20_00480 0.46 +3.6 493,378 + MPMX20_00480 0.81 -2.5 493,528 - -1.4 493,533 + +1.2 493,647 + -0.3 493,655 - +1.5 493,658 + -0.3 493,658 + -0.2 493,662 + -2.2 493,666 - +1.0 493,666 - -1.2 493,666 - +2.5 493,666 - -1.1 493,695 - -0.5 493,701 - +0.8 493,722 + MPMX20_00481 0.12 -0.1 493,732 + MPMX20_00481 0.13 -0.8
Or see this region's nucleotide sequence