Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00463 and MPMX20_00464 overlap by 4 nucleotides MPMX20_00464 and MPMX20_00465 are separated by 172 nucleotides MPMX20_00465 and MPMX20_00466 are separated by 136 nucleotides
MPMX20_00463: MPMX20_00463 - Putative acyl-CoA dehydrogenase AidB, at 479,233 to 480,855
_00463
MPMX20_00464: MPMX20_00464 - hypothetical protein, at 480,852 to 482,783
_00464
MPMX20_00465: MPMX20_00465 - hypothetical protein, at 482,956 to 483,243
_00465
MPMX20_00466: MPMX20_00466 - Lipoprotein BsmA, at 483,380 to 483,688
_00466
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 479.852 kb on + strand, within MPMX20_00463 at 479.852 kb on + strand, within MPMX20_00463 at 479.916 kb on + strand, within MPMX20_00463 at 479.922 kb on + strand, within MPMX20_00463 at 479.966 kb on - strand, within MPMX20_00463 at 479.976 kb on + strand, within MPMX20_00463 at 479.976 kb on + strand, within MPMX20_00463 at 479.997 kb on - strand, within MPMX20_00463 at 480.085 kb on + strand, within MPMX20_00463 at 480.119 kb on + strand, within MPMX20_00463 at 480.157 kb on - strand, within MPMX20_00463 at 480.183 kb on + strand, within MPMX20_00463 at 480.202 kb on + strand, within MPMX20_00463 at 480.245 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.250 kb on + strand, within MPMX20_00463 at 480.258 kb on - strand, within MPMX20_00463 at 480.294 kb on + strand, within MPMX20_00463 at 480.300 kb on - strand, within MPMX20_00463 at 480.326 kb on - strand, within MPMX20_00463 at 480.331 kb on - strand, within MPMX20_00463 at 480.442 kb on + strand, within MPMX20_00463 at 480.446 kb on + strand, within MPMX20_00463 at 480.454 kb on - strand, within MPMX20_00463 at 480.464 kb on - strand, within MPMX20_00463 at 480.487 kb on + strand, within MPMX20_00463 at 480.508 kb on + strand, within MPMX20_00463 at 480.516 kb on - strand, within MPMX20_00463 at 480.612 kb on - strand, within MPMX20_00463 at 480.612 kb on - strand, within MPMX20_00463 at 480.739 kb on + strand at 480.751 kb on + strand at 480.764 kb on - strand at 480.775 kb on + strand at 480.801 kb on - strand at 480.880 kb on - strand at 480.885 kb on + strand at 480.890 kb on + strand at 480.890 kb on + strand at 480.919 kb on - strand at 480.957 kb on - strand at 480.957 kb on - strand at 480.993 kb on + strand at 480.996 kb on - strand at 480.999 kb on + strand at 481.001 kb on - strand at 481.030 kb on + strand at 481.120 kb on - strand, within MPMX20_00464 at 481.165 kb on - strand, within MPMX20_00464 at 481.229 kb on - strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.255 kb on + strand, within MPMX20_00464 at 481.263 kb on - strand, within MPMX20_00464 at 481.267 kb on + strand, within MPMX20_00464 at 481.343 kb on - strand, within MPMX20_00464 at 481.391 kb on - strand, within MPMX20_00464 at 481.400 kb on - strand, within MPMX20_00464 at 481.481 kb on + strand, within MPMX20_00464 at 481.510 kb on + strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.510 kb on - strand, within MPMX20_00464 at 481.674 kb on - strand, within MPMX20_00464 at 481.852 kb on + strand, within MPMX20_00464 at 481.852 kb on + strand, within MPMX20_00464 at 481.940 kb on + strand, within MPMX20_00464 at 481.945 kb on + strand, within MPMX20_00464 at 481.994 kb on + strand, within MPMX20_00464 at 482.007 kb on - strand, within MPMX20_00464 at 482.012 kb on - strand, within MPMX20_00464 at 482.035 kb on + strand, within MPMX20_00464 at 482.098 kb on + strand, within MPMX20_00464 at 482.116 kb on - strand, within MPMX20_00464 at 482.140 kb on + strand, within MPMX20_00464 at 482.140 kb on + strand, within MPMX20_00464 at 482.222 kb on - strand, within MPMX20_00464 at 482.224 kb on + strand, within MPMX20_00464 at 482.241 kb on + strand, within MPMX20_00464 at 482.244 kb on - strand, within MPMX20_00464 at 482.249 kb on - strand, within MPMX20_00464 at 482.265 kb on - strand, within MPMX20_00464 at 482.299 kb on + strand, within MPMX20_00464 at 482.304 kb on + strand, within MPMX20_00464 at 482.326 kb on - strand, within MPMX20_00464 at 482.348 kb on + strand, within MPMX20_00464 at 482.359 kb on - strand, within MPMX20_00464 at 482.384 kb on + strand, within MPMX20_00464 at 482.393 kb on + strand, within MPMX20_00464 at 482.442 kb on + strand, within MPMX20_00464 at 482.467 kb on + strand, within MPMX20_00464 at 482.560 kb on + strand, within MPMX20_00464 at 482.565 kb on + strand, within MPMX20_00464 at 482.566 kb on + strand, within MPMX20_00464 at 482.590 kb on + strand at 482.598 kb on - strand at 482.616 kb on - strand at 482.744 kb on + strand at 482.744 kb on + strand at 482.744 kb on + strand at 482.751 kb on + strand at 482.756 kb on + strand at 482.759 kb on - strand at 482.764 kb on - strand at 482.764 kb on - strand at 482.803 kb on + strand at 482.805 kb on + strand at 482.974 kb on - strand at 482.984 kb on - strand at 482.995 kb on + strand, within MPMX20_00465 at 483.028 kb on + strand, within MPMX20_00465 at 483.043 kb on - strand, within MPMX20_00465 at 483.086 kb on - strand, within MPMX20_00465 at 483.117 kb on - strand, within MPMX20_00465 at 483.149 kb on - strand, within MPMX20_00465 at 483.166 kb on + strand, within MPMX20_00465 at 483.173 kb on + strand, within MPMX20_00465 at 483.181 kb on - strand, within MPMX20_00465 at 483.181 kb on - strand, within MPMX20_00465 at 483.186 kb on + strand, within MPMX20_00465 at 483.196 kb on + strand, within MPMX20_00465 at 483.196 kb on + strand, within MPMX20_00465 at 483.196 kb on + strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.204 kb on - strand, within MPMX20_00465 at 483.213 kb on + strand, within MPMX20_00465 at 483.216 kb on - strand at 483.262 kb on + strand at 483.267 kb on + strand at 483.290 kb on - strand at 483.306 kb on + strand at 483.323 kb on + strand at 483.341 kb on - strand at 483.351 kb on - strand at 483.353 kb on + strand at 483.353 kb on + strand at 483.361 kb on - strand at 483.361 kb on - strand at 483.393 kb on + strand at 483.405 kb on + strand at 483.405 kb on + strand at 483.411 kb on - strand, within MPMX20_00466 at 483.413 kb on - strand, within MPMX20_00466 at 483.415 kb on + strand, within MPMX20_00466 at 483.418 kb on - strand, within MPMX20_00466 at 483.418 kb on - strand, within MPMX20_00466 at 483.418 kb on - strand, within MPMX20_00466 at 483.467 kb on + strand, within MPMX20_00466 at 483.477 kb on + strand, within MPMX20_00466 at 483.485 kb on - strand, within MPMX20_00466 at 483.485 kb on - strand, within MPMX20_00466 at 483.492 kb on + strand, within MPMX20_00466 at 483.513 kb on - strand, within MPMX20_00466 at 483.516 kb on + strand, within MPMX20_00466 at 483.521 kb on + strand, within MPMX20_00466 at 483.526 kb on + strand, within MPMX20_00466 at 483.548 kb on + strand, within MPMX20_00466 at 483.548 kb on + strand, within MPMX20_00466 at 483.555 kb on - strand, within MPMX20_00466 at 483.556 kb on - strand, within MPMX20_00466 at 483.565 kb on + strand, within MPMX20_00466 at 483.586 kb on + strand, within MPMX20_00466 at 483.594 kb on - strand, within MPMX20_00466 at 483.618 kb on + strand, within MPMX20_00466 at 483.626 kb on - strand, within MPMX20_00466 at 483.646 kb on + strand, within MPMX20_00466 at 483.647 kb on - strand, within MPMX20_00466 at 483.677 kb on + strand at 483.711 kb on + strand at 483.711 kb on + strand at 483.714 kb on - strand at 483.719 kb on - strand at 483.719 kb on - strand at 483.754 kb on + strand at 483.762 kb on - strand at 483.762 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 479,852 + MPMX20_00463 0.38 -1.3 479,852 + MPMX20_00463 0.38 +1.0 479,916 + MPMX20_00463 0.42 +1.5 479,922 + MPMX20_00463 0.42 -0.9 479,966 - MPMX20_00463 0.45 +0.5 479,976 + MPMX20_00463 0.46 -0.7 479,976 + MPMX20_00463 0.46 -1.0 479,997 - MPMX20_00463 0.47 -0.0 480,085 + MPMX20_00463 0.52 +0.6 480,119 + MPMX20_00463 0.55 +0.6 480,157 - MPMX20_00463 0.57 -2.9 480,183 + MPMX20_00463 0.59 -3.2 480,202 + MPMX20_00463 0.60 -2.7 480,245 + MPMX20_00463 0.62 -1.9 480,250 + MPMX20_00463 0.63 +1.1 480,250 + MPMX20_00463 0.63 -0.1 480,250 + MPMX20_00463 0.63 +0.5 480,250 + MPMX20_00463 0.63 -0.2 480,258 - MPMX20_00463 0.63 -0.1 480,294 + MPMX20_00463 0.65 +3.4 480,300 - MPMX20_00463 0.66 -1.1 480,326 - MPMX20_00463 0.67 +1.0 480,331 - MPMX20_00463 0.68 -2.4 480,442 + MPMX20_00463 0.74 -0.5 480,446 + MPMX20_00463 0.75 +1.0 480,454 - MPMX20_00463 0.75 +0.1 480,464 - MPMX20_00463 0.76 +0.5 480,487 + MPMX20_00463 0.77 -0.6 480,508 + MPMX20_00463 0.79 -3.5 480,516 - MPMX20_00463 0.79 -0.2 480,612 - MPMX20_00463 0.85 -1.1 480,612 - MPMX20_00463 0.85 -1.6 480,739 + -1.1 480,751 + +1.6 480,764 - -1.5 480,775 + -0.0 480,801 - -0.0 480,880 - -1.0 480,885 + -0.0 480,890 + +2.1 480,890 + -2.2 480,919 - +1.1 480,957 - +0.1 480,957 - +0.6 480,993 + +0.9 480,996 - +1.2 480,999 + -2.1 481,001 - +4.5 481,030 + +2.0 481,120 - MPMX20_00464 0.14 -1.9 481,165 - MPMX20_00464 0.16 -1.0 481,229 - MPMX20_00464 0.20 -1.7 481,255 + MPMX20_00464 0.21 -3.4 481,255 + MPMX20_00464 0.21 -0.1 481,255 + MPMX20_00464 0.21 -0.2 481,255 + MPMX20_00464 0.21 +0.0 481,263 - MPMX20_00464 0.21 -1.8 481,267 + MPMX20_00464 0.21 +1.0 481,343 - MPMX20_00464 0.25 -0.2 481,391 - MPMX20_00464 0.28 +0.2 481,400 - MPMX20_00464 0.28 +0.3 481,481 + MPMX20_00464 0.33 +0.4 481,510 + MPMX20_00464 0.34 +0.4 481,510 - MPMX20_00464 0.34 -0.2 481,510 - MPMX20_00464 0.34 -0.9 481,510 - MPMX20_00464 0.34 +0.7 481,510 - MPMX20_00464 0.34 -2.0 481,510 - MPMX20_00464 0.34 +1.3 481,510 - MPMX20_00464 0.34 -0.5 481,674 - MPMX20_00464 0.43 -0.7 481,852 + MPMX20_00464 0.52 -0.9 481,852 + MPMX20_00464 0.52 -1.7 481,940 + MPMX20_00464 0.56 -0.2 481,945 + MPMX20_00464 0.57 +1.0 481,994 + MPMX20_00464 0.59 +2.4 482,007 - MPMX20_00464 0.60 +1.6 482,012 - MPMX20_00464 0.60 -2.2 482,035 + MPMX20_00464 0.61 -2.2 482,098 + MPMX20_00464 0.64 -1.5 482,116 - MPMX20_00464 0.65 +0.0 482,140 + MPMX20_00464 0.67 -0.2 482,140 + MPMX20_00464 0.67 +3.5 482,222 - MPMX20_00464 0.71 -1.4 482,224 + MPMX20_00464 0.71 -0.2 482,241 + MPMX20_00464 0.72 -0.7 482,244 - MPMX20_00464 0.72 -1.7 482,249 - MPMX20_00464 0.72 -0.8 482,265 - MPMX20_00464 0.73 +0.0 482,299 + MPMX20_00464 0.75 -3.6 482,304 + MPMX20_00464 0.75 -2.8 482,326 - MPMX20_00464 0.76 -1.2 482,348 + MPMX20_00464 0.77 +0.3 482,359 - MPMX20_00464 0.78 -0.3 482,384 + MPMX20_00464 0.79 +0.1 482,393 + MPMX20_00464 0.80 -0.9 482,442 + MPMX20_00464 0.82 +0.3 482,467 + MPMX20_00464 0.84 -1.3 482,560 + MPMX20_00464 0.88 +0.6 482,565 + MPMX20_00464 0.89 -0.3 482,566 + MPMX20_00464 0.89 -3.2 482,590 + +0.1 482,598 - +2.2 482,616 - -3.1 482,744 + -0.2 482,744 + -1.8 482,744 + +0.6 482,751 + +2.4 482,756 + +0.2 482,759 - +0.2 482,764 - -0.7 482,764 - +0.0 482,803 + -0.7 482,805 + +0.3 482,974 - +0.3 482,984 - +1.3 482,995 + MPMX20_00465 0.14 +1.6 483,028 + MPMX20_00465 0.25 +0.3 483,043 - MPMX20_00465 0.30 +0.8 483,086 - MPMX20_00465 0.45 +1.9 483,117 - MPMX20_00465 0.56 +2.5 483,149 - MPMX20_00465 0.67 -1.7 483,166 + MPMX20_00465 0.73 -0.9 483,173 + MPMX20_00465 0.75 -0.2 483,181 - MPMX20_00465 0.78 +0.6 483,181 - MPMX20_00465 0.78 -0.6 483,186 + MPMX20_00465 0.80 +0.2 483,196 + MPMX20_00465 0.83 +0.0 483,196 + MPMX20_00465 0.83 +0.9 483,196 + MPMX20_00465 0.83 +2.6 483,204 - MPMX20_00465 0.86 +1.0 483,204 - MPMX20_00465 0.86 +0.4 483,204 - MPMX20_00465 0.86 +1.1 483,204 - MPMX20_00465 0.86 +0.3 483,213 + MPMX20_00465 0.89 -2.9 483,216 - -3.0 483,262 + -2.8 483,267 + +1.2 483,290 - +0.4 483,306 + -0.9 483,323 + -0.9 483,341 - +0.1 483,351 - +2.3 483,353 + -1.5 483,353 + +1.6 483,361 - +1.4 483,361 - -0.7 483,393 + -0.8 483,405 + +2.0 483,405 + -0.6 483,411 - MPMX20_00466 0.10 +0.3 483,413 - MPMX20_00466 0.11 +0.7 483,415 + MPMX20_00466 0.11 +2.5 483,418 - MPMX20_00466 0.12 +0.5 483,418 - MPMX20_00466 0.12 +0.2 483,418 - MPMX20_00466 0.12 -1.6 483,467 + MPMX20_00466 0.28 +1.5 483,477 + MPMX20_00466 0.31 -0.4 483,485 - MPMX20_00466 0.34 -0.4 483,485 - MPMX20_00466 0.34 +1.8 483,492 + MPMX20_00466 0.36 -0.2 483,513 - MPMX20_00466 0.43 +1.1 483,516 + MPMX20_00466 0.44 +1.5 483,521 + MPMX20_00466 0.46 +0.5 483,526 + MPMX20_00466 0.47 +0.9 483,548 + MPMX20_00466 0.54 +0.4 483,548 + MPMX20_00466 0.54 +1.1 483,555 - MPMX20_00466 0.57 -1.2 483,556 - MPMX20_00466 0.57 -3.2 483,565 + MPMX20_00466 0.60 -1.1 483,586 + MPMX20_00466 0.67 -0.2 483,594 - MPMX20_00466 0.69 +2.6 483,618 + MPMX20_00466 0.77 +1.0 483,626 - MPMX20_00466 0.80 +1.2 483,646 + MPMX20_00466 0.86 +0.1 483,647 - MPMX20_00466 0.86 +1.1 483,677 + +1.3 483,711 + +1.8 483,711 + -2.5 483,714 - -2.4 483,719 - +1.2 483,719 - +0.1 483,754 + +1.2 483,762 - +0.0 483,762 - +2.1
Or see this region's nucleotide sequence