Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00416 and MPMX20_00417 overlap by 25 nucleotides MPMX20_00417 and MPMX20_00418 are separated by 113 nucleotides MPMX20_00418 and MPMX20_00419 are separated by 116 nucleotides
MPMX20_00416: MPMX20_00416 - Thiol:disulfide interchange protein DsbD, at 431,688 to 433,391
_00416
MPMX20_00417: MPMX20_00417 - Divalent-cation tolerance protein CutA, at 433,367 to 433,690
_00417
MPMX20_00418: MPMX20_00418 - Anaerobic C4-dicarboxylate transporter DcuA, at 433,804 to 435,105
_00418
MPMX20_00419: MPMX20_00419 - Aspartate ammonia-lyase, at 435,222 to 436,658
_00419
Position (kb) 433
434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 432.823 kb on + strand, within MPMX20_00416 at 432.842 kb on + strand, within MPMX20_00416 at 432.891 kb on + strand, within MPMX20_00416 at 432.899 kb on - strand, within MPMX20_00416 at 432.909 kb on - strand, within MPMX20_00416 at 432.909 kb on - strand, within MPMX20_00416 at 432.909 kb on - strand, within MPMX20_00416 at 432.928 kb on - strand, within MPMX20_00416 at 432.935 kb on - strand, within MPMX20_00416 at 433.008 kb on + strand, within MPMX20_00416 at 433.016 kb on - strand, within MPMX20_00416 at 433.024 kb on + strand, within MPMX20_00416 at 433.029 kb on + strand, within MPMX20_00416 at 433.029 kb on + strand, within MPMX20_00416 at 433.037 kb on - strand, within MPMX20_00416 at 433.037 kb on - strand, within MPMX20_00416 at 433.096 kb on - strand, within MPMX20_00416 at 433.155 kb on + strand, within MPMX20_00416 at 433.155 kb on + strand, within MPMX20_00416 at 433.155 kb on + strand, within MPMX20_00416 at 433.163 kb on - strand, within MPMX20_00416 at 433.166 kb on + strand, within MPMX20_00416 at 433.171 kb on + strand, within MPMX20_00416 at 433.171 kb on + strand, within MPMX20_00416 at 433.179 kb on - strand, within MPMX20_00416 at 433.179 kb on - strand, within MPMX20_00416 at 433.192 kb on + strand, within MPMX20_00416 at 433.192 kb on + strand, within MPMX20_00416 at 433.192 kb on + strand, within MPMX20_00416 at 433.192 kb on + strand, within MPMX20_00416 at 433.200 kb on - strand, within MPMX20_00416 at 433.200 kb on - strand, within MPMX20_00416 at 433.200 kb on - strand, within MPMX20_00416 at 433.200 kb on - strand, within MPMX20_00416 at 433.200 kb on - strand, within MPMX20_00416 at 433.200 kb on - strand, within MPMX20_00416 at 433.202 kb on + strand, within MPMX20_00416 at 433.213 kb on + strand, within MPMX20_00416 at 433.223 kb on - strand at 433.250 kb on + strand at 433.351 kb on + strand at 433.356 kb on - strand at 433.359 kb on - strand at 433.370 kb on + strand at 433.380 kb on + strand at 433.388 kb on - strand at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.472 kb on + strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.480 kb on - strand, within MPMX20_00417 at 433.511 kb on - strand, within MPMX20_00417 at 433.514 kb on + strand, within MPMX20_00417 at 433.514 kb on + strand, within MPMX20_00417 at 433.561 kb on - strand, within MPMX20_00417 at 433.628 kb on + strand, within MPMX20_00417 at 433.628 kb on + strand, within MPMX20_00417 at 433.633 kb on + strand, within MPMX20_00417 at 433.636 kb on - strand, within MPMX20_00417 at 433.636 kb on - strand, within MPMX20_00417 at 433.664 kb on - strand at 433.706 kb on + strand at 433.927 kb on - strand at 433.937 kb on + strand, within MPMX20_00418 at 433.947 kb on + strand, within MPMX20_00418 at 433.947 kb on + strand, within MPMX20_00418 at 433.982 kb on - strand, within MPMX20_00418 at 433.982 kb on - strand, within MPMX20_00418 at 434.000 kb on + strand, within MPMX20_00418 at 434.013 kb on + strand, within MPMX20_00418 at 434.013 kb on + strand, within MPMX20_00418 at 434.041 kb on + strand, within MPMX20_00418 at 434.041 kb on + strand, within MPMX20_00418 at 434.041 kb on + strand, within MPMX20_00418 at 434.049 kb on - strand, within MPMX20_00418 at 434.064 kb on + strand, within MPMX20_00418 at 434.072 kb on - strand, within MPMX20_00418 at 434.077 kb on - strand, within MPMX20_00418 at 434.105 kb on + strand, within MPMX20_00418 at 434.146 kb on + strand, within MPMX20_00418 at 434.146 kb on + strand, within MPMX20_00418 at 434.146 kb on + strand, within MPMX20_00418 at 434.154 kb on - strand, within MPMX20_00418 at 434.184 kb on + strand, within MPMX20_00418 at 434.189 kb on + strand, within MPMX20_00418 at 434.213 kb on - strand, within MPMX20_00418 at 434.213 kb on - strand, within MPMX20_00418 at 434.240 kb on - strand, within MPMX20_00418 at 434.282 kb on + strand, within MPMX20_00418 at 434.290 kb on - strand, within MPMX20_00418 at 434.340 kb on + strand, within MPMX20_00418 at 434.358 kb on + strand, within MPMX20_00418 at 434.366 kb on - strand, within MPMX20_00418 at 434.392 kb on - strand, within MPMX20_00418 at 434.397 kb on - strand, within MPMX20_00418 at 434.427 kb on - strand, within MPMX20_00418 at 434.427 kb on - strand, within MPMX20_00418 at 434.558 kb on - strand, within MPMX20_00418 at 434.573 kb on - strand, within MPMX20_00418 at 434.627 kb on + strand, within MPMX20_00418 at 434.627 kb on + strand, within MPMX20_00418 at 434.631 kb on + strand, within MPMX20_00418 at 434.671 kb on - strand, within MPMX20_00418 at 434.727 kb on + strand, within MPMX20_00418 at 434.729 kb on + strand, within MPMX20_00418 at 434.759 kb on - strand, within MPMX20_00418 at 434.769 kb on - strand, within MPMX20_00418 at 434.773 kb on + strand, within MPMX20_00418 at 434.807 kb on + strand, within MPMX20_00418 at 434.815 kb on - strand, within MPMX20_00418 at 434.911 kb on - strand, within MPMX20_00418 at 434.919 kb on - strand, within MPMX20_00418 at 434.967 kb on + strand, within MPMX20_00418 at 434.978 kb on + strand at 434.978 kb on + strand at 434.978 kb on + strand at 434.986 kb on - strand at 434.986 kb on - strand at 434.997 kb on + strand at 434.997 kb on + strand at 435.005 kb on - strand at 435.012 kb on + strand at 435.020 kb on - strand at 435.044 kb on + strand at 435.046 kb on + strand at 435.054 kb on - strand at 435.103 kb on + strand at 435.103 kb on + strand at 435.103 kb on + strand at 435.103 kb on - strand at 435.103 kb on - strand at 435.112 kb on - strand at 435.196 kb on + strand at 435.206 kb on + strand at 435.211 kb on + strand at 435.211 kb on + strand at 435.214 kb on - strand at 435.214 kb on - strand at 435.214 kb on - strand at 435.219 kb on - strand at 435.315 kb on - strand at 435.327 kb on + strand at 435.388 kb on + strand, within MPMX20_00419 at 435.410 kb on + strand, within MPMX20_00419 at 435.438 kb on + strand, within MPMX20_00419 at 435.444 kb on + strand, within MPMX20_00419 at 435.444 kb on + strand, within MPMX20_00419 at 435.468 kb on + strand, within MPMX20_00419 at 435.503 kb on + strand, within MPMX20_00419 at 435.514 kb on + strand, within MPMX20_00419 at 435.606 kb on + strand, within MPMX20_00419 at 435.611 kb on + strand, within MPMX20_00419 at 435.621 kb on - strand, within MPMX20_00419 at 435.632 kb on + strand, within MPMX20_00419 at 435.632 kb on + strand, within MPMX20_00419 at 435.640 kb on - strand, within MPMX20_00419 at 435.640 kb on - strand, within MPMX20_00419 at 435.663 kb on - strand, within MPMX20_00419 at 435.693 kb on - strand, within MPMX20_00419 at 435.737 kb on - strand, within MPMX20_00419 at 435.754 kb on - strand, within MPMX20_00419 at 435.759 kb on - strand, within MPMX20_00419 at 435.767 kb on + strand, within MPMX20_00419 at 435.822 kb on - strand, within MPMX20_00419 at 435.884 kb on + strand, within MPMX20_00419 at 435.892 kb on - strand, within MPMX20_00419 at 435.892 kb on - strand, within MPMX20_00419 at 435.893 kb on - strand, within MPMX20_00419 at 435.939 kb on + strand, within MPMX20_00419 at 435.947 kb on - strand, within MPMX20_00419 at 435.989 kb on + strand, within MPMX20_00419 at 435.989 kb on + strand, within MPMX20_00419 at 435.989 kb on + strand, within MPMX20_00419 at 435.997 kb on - strand, within MPMX20_00419 at 435.997 kb on - strand, within MPMX20_00419 at 435.997 kb on - strand, within MPMX20_00419 at 435.997 kb on - strand, within MPMX20_00419 at 435.997 kb on - strand, within MPMX20_00419 at 436.096 kb on - strand, within MPMX20_00419
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 432,823 + MPMX20_00416 0.67 -1.7 432,842 + MPMX20_00416 0.68 +0.6 432,891 + MPMX20_00416 0.71 +2.2 432,899 - MPMX20_00416 0.71 +0.8 432,909 - MPMX20_00416 0.72 +4.0 432,909 - MPMX20_00416 0.72 -1.8 432,909 - MPMX20_00416 0.72 -1.6 432,928 - MPMX20_00416 0.73 -2.0 432,935 - MPMX20_00416 0.73 -0.2 433,008 + MPMX20_00416 0.77 -0.5 433,016 - MPMX20_00416 0.78 +0.6 433,024 + MPMX20_00416 0.78 -0.6 433,029 + MPMX20_00416 0.79 -0.8 433,029 + MPMX20_00416 0.79 -1.1 433,037 - MPMX20_00416 0.79 -2.4 433,037 - MPMX20_00416 0.79 +0.2 433,096 - MPMX20_00416 0.83 -2.0 433,155 + MPMX20_00416 0.86 +2.6 433,155 + MPMX20_00416 0.86 -1.2 433,155 + MPMX20_00416 0.86 +1.0 433,163 - MPMX20_00416 0.87 +0.3 433,166 + MPMX20_00416 0.87 -1.0 433,171 + MPMX20_00416 0.87 -1.4 433,171 + MPMX20_00416 0.87 -0.2 433,179 - MPMX20_00416 0.88 +0.2 433,179 - MPMX20_00416 0.88 -0.6 433,192 + MPMX20_00416 0.88 -1.4 433,192 + MPMX20_00416 0.88 +0.2 433,192 + MPMX20_00416 0.88 +1.6 433,192 + MPMX20_00416 0.88 +1.7 433,200 - MPMX20_00416 0.89 +1.6 433,200 - MPMX20_00416 0.89 -1.0 433,200 - MPMX20_00416 0.89 -2.6 433,200 - MPMX20_00416 0.89 -2.2 433,200 - MPMX20_00416 0.89 +2.2 433,200 - MPMX20_00416 0.89 +1.9 433,202 + MPMX20_00416 0.89 -2.4 433,213 + MPMX20_00416 0.89 +1.8 433,223 - -1.6 433,250 + +2.2 433,351 + -1.3 433,356 - -1.3 433,359 - -1.8 433,370 + -2.2 433,380 + +3.5 433,388 - -1.4 433,472 + MPMX20_00417 0.32 -1.0 433,472 + MPMX20_00417 0.32 -1.7 433,472 + MPMX20_00417 0.32 -0.7 433,472 + MPMX20_00417 0.32 +0.6 433,472 + MPMX20_00417 0.32 -0.5 433,472 + MPMX20_00417 0.32 +1.4 433,472 + MPMX20_00417 0.32 -0.2 433,472 + MPMX20_00417 0.32 -0.1 433,472 + MPMX20_00417 0.32 -1.7 433,480 - MPMX20_00417 0.35 +1.0 433,480 - MPMX20_00417 0.35 -0.6 433,480 - MPMX20_00417 0.35 +2.9 433,480 - MPMX20_00417 0.35 +0.6 433,480 - MPMX20_00417 0.35 +1.8 433,480 - MPMX20_00417 0.35 +0.2 433,480 - MPMX20_00417 0.35 -0.8 433,480 - MPMX20_00417 0.35 -3.4 433,480 - MPMX20_00417 0.35 -1.0 433,480 - MPMX20_00417 0.35 +0.9 433,480 - MPMX20_00417 0.35 -0.4 433,480 - MPMX20_00417 0.35 +0.6 433,480 - MPMX20_00417 0.35 +0.6 433,511 - MPMX20_00417 0.44 -0.4 433,514 + MPMX20_00417 0.45 +0.6 433,514 + MPMX20_00417 0.45 -1.3 433,561 - MPMX20_00417 0.60 -0.2 433,628 + MPMX20_00417 0.81 +2.7 433,628 + MPMX20_00417 0.81 +0.2 433,633 + MPMX20_00417 0.82 -1.5 433,636 - MPMX20_00417 0.83 -0.2 433,636 - MPMX20_00417 0.83 +1.2 433,664 - -0.1 433,706 + +1.9 433,927 - +1.6 433,937 + MPMX20_00418 0.10 -1.6 433,947 + MPMX20_00418 0.11 +2.6 433,947 + MPMX20_00418 0.11 -2.5 433,982 - MPMX20_00418 0.14 +2.1 433,982 - MPMX20_00418 0.14 -0.2 434,000 + MPMX20_00418 0.15 +1.8 434,013 + MPMX20_00418 0.16 -3.4 434,013 + MPMX20_00418 0.16 +1.4 434,041 + MPMX20_00418 0.18 -0.2 434,041 + MPMX20_00418 0.18 -0.1 434,041 + MPMX20_00418 0.18 +1.0 434,049 - MPMX20_00418 0.19 -0.0 434,064 + MPMX20_00418 0.20 +2.6 434,072 - MPMX20_00418 0.21 -0.8 434,077 - MPMX20_00418 0.21 +1.6 434,105 + MPMX20_00418 0.23 -0.9 434,146 + MPMX20_00418 0.26 +0.6 434,146 + MPMX20_00418 0.26 +0.3 434,146 + MPMX20_00418 0.26 -1.4 434,154 - MPMX20_00418 0.27 +4.6 434,184 + MPMX20_00418 0.29 -1.4 434,189 + MPMX20_00418 0.30 -1.1 434,213 - MPMX20_00418 0.31 +0.4 434,213 - MPMX20_00418 0.31 -0.1 434,240 - MPMX20_00418 0.33 +2.5 434,282 + MPMX20_00418 0.37 +0.6 434,290 - MPMX20_00418 0.37 -1.8 434,340 + MPMX20_00418 0.41 +3.4 434,358 + MPMX20_00418 0.43 +0.0 434,366 - MPMX20_00418 0.43 +1.6 434,392 - MPMX20_00418 0.45 -0.8 434,397 - MPMX20_00418 0.46 -0.4 434,427 - MPMX20_00418 0.48 +2.0 434,427 - MPMX20_00418 0.48 -0.9 434,558 - MPMX20_00418 0.58 -1.4 434,573 - MPMX20_00418 0.59 -0.8 434,627 + MPMX20_00418 0.63 -0.7 434,627 + MPMX20_00418 0.63 -1.5 434,631 + MPMX20_00418 0.64 -1.0 434,671 - MPMX20_00418 0.67 +0.3 434,727 + MPMX20_00418 0.71 -0.2 434,729 + MPMX20_00418 0.71 +0.6 434,759 - MPMX20_00418 0.73 +0.2 434,769 - MPMX20_00418 0.74 +1.6 434,773 + MPMX20_00418 0.74 -3.3 434,807 + MPMX20_00418 0.77 +1.1 434,815 - MPMX20_00418 0.78 -0.8 434,911 - MPMX20_00418 0.85 +2.6 434,919 - MPMX20_00418 0.86 +2.1 434,967 + MPMX20_00418 0.89 +1.0 434,978 + -0.1 434,978 + +0.7 434,978 + -2.8 434,986 - +2.0 434,986 - +1.2 434,997 + -0.8 434,997 + +0.2 435,005 - -1.3 435,012 + -0.4 435,020 - -0.0 435,044 + +0.2 435,046 + -2.1 435,054 - -0.6 435,103 + -0.7 435,103 + -1.7 435,103 + -2.6 435,103 - -0.8 435,103 - +0.7 435,112 - -2.0 435,196 + +0.8 435,206 + -0.2 435,211 + -2.8 435,211 + +1.5 435,214 - +0.7 435,214 - +0.8 435,214 - -0.8 435,219 - +0.1 435,315 - +1.0 435,327 + -2.5 435,388 + MPMX20_00419 0.12 -1.2 435,410 + MPMX20_00419 0.13 -2.6 435,438 + MPMX20_00419 0.15 +1.6 435,444 + MPMX20_00419 0.15 -3.3 435,444 + MPMX20_00419 0.15 -0.9 435,468 + MPMX20_00419 0.17 -1.4 435,503 + MPMX20_00419 0.20 -1.8 435,514 + MPMX20_00419 0.20 -0.0 435,606 + MPMX20_00419 0.27 +1.0 435,611 + MPMX20_00419 0.27 -2.6 435,621 - MPMX20_00419 0.28 -2.7 435,632 + MPMX20_00419 0.29 +2.6 435,632 + MPMX20_00419 0.29 -2.8 435,640 - MPMX20_00419 0.29 +0.2 435,640 - MPMX20_00419 0.29 -0.9 435,663 - MPMX20_00419 0.31 -2.7 435,693 - MPMX20_00419 0.33 -0.8 435,737 - MPMX20_00419 0.36 -1.4 435,754 - MPMX20_00419 0.37 +0.2 435,759 - MPMX20_00419 0.37 -2.9 435,767 + MPMX20_00419 0.38 +0.2 435,822 - MPMX20_00419 0.42 +1.1 435,884 + MPMX20_00419 0.46 +1.0 435,892 - MPMX20_00419 0.47 +1.2 435,892 - MPMX20_00419 0.47 +1.1 435,893 - MPMX20_00419 0.47 -2.1 435,939 + MPMX20_00419 0.50 -0.2 435,947 - MPMX20_00419 0.50 -0.2 435,989 + MPMX20_00419 0.53 -2.0 435,989 + MPMX20_00419 0.53 -1.7 435,989 + MPMX20_00419 0.53 -0.8 435,997 - MPMX20_00419 0.54 +0.2 435,997 - MPMX20_00419 0.54 -2.2 435,997 - MPMX20_00419 0.54 +0.2 435,997 - MPMX20_00419 0.54 +0.2 435,997 - MPMX20_00419 0.54 -3.0 436,096 - MPMX20_00419 0.61 +1.0
Or see this region's nucleotide sequence