Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00386

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00384 and MPMX20_00385 are separated by 14 nucleotidesMPMX20_00385 and MPMX20_00386 are separated by 20 nucleotidesMPMX20_00386 and MPMX20_00387 are separated by 11 nucleotidesMPMX20_00387 and MPMX20_00388 are separated by 53 nucleotidesMPMX20_00388 and MPMX20_00389 are separated by 87 nucleotidesMPMX20_00389 and MPMX20_00390 are separated by 40 nucleotides MPMX20_00384: MPMX20_00384 - Major phosphate-irrepressible acid phosphatase, at 404,808 to 405,662 _00384 MPMX20_00385: MPMX20_00385 - hypothetical protein, at 405,677 to 406,540 _00385 MPMX20_00386: MPMX20_00386 - hypothetical protein, at 406,561 to 406,692 _00386 MPMX20_00387: MPMX20_00387 - hypothetical protein, at 406,704 to 406,814 _00387 MPMX20_00388: MPMX20_00388 - hypothetical protein, at 406,868 to 406,966 _00388 MPMX20_00389: MPMX20_00389 - hypothetical protein, at 407,054 to 407,440 _00389 MPMX20_00390: MPMX20_00390 - hypothetical protein, at 407,481 to 407,897 _00390 Position (kb) 406 407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 405.564 kb on + strand, within MPMX20_00384at 405.607 kb on + strandat 405.609 kb on - strandat 405.609 kb on - strandat 405.612 kb on + strandat 405.612 kb on + strandat 405.612 kb on + strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.620 kb on - strandat 405.642 kb on - strandat 405.652 kb on - strandat 405.652 kb on - strandat 405.654 kb on - strandat 405.656 kb on + strandat 405.656 kb on + strandat 405.659 kb on - strandat 405.663 kb on + strandat 405.667 kb on + strandat 405.697 kb on + strandat 405.712 kb on - strandat 405.718 kb on + strandat 405.735 kb on + strandat 405.736 kb on - strandat 405.736 kb on - strandat 405.743 kb on - strandat 405.769 kb on + strand, within MPMX20_00385at 405.861 kb on + strand, within MPMX20_00385at 405.899 kb on - strand, within MPMX20_00385at 405.918 kb on + strand, within MPMX20_00385at 405.923 kb on + strand, within MPMX20_00385at 405.940 kb on - strand, within MPMX20_00385at 405.987 kb on + strand, within MPMX20_00385at 406.019 kb on + strand, within MPMX20_00385at 406.055 kb on + strand, within MPMX20_00385at 406.125 kb on + strand, within MPMX20_00385at 406.155 kb on + strand, within MPMX20_00385at 406.155 kb on + strand, within MPMX20_00385at 406.181 kb on - strand, within MPMX20_00385at 406.203 kb on - strand, within MPMX20_00385at 406.222 kb on - strand, within MPMX20_00385at 406.224 kb on + strand, within MPMX20_00385at 406.236 kb on + strand, within MPMX20_00385at 406.327 kb on + strand, within MPMX20_00385at 406.365 kb on + strand, within MPMX20_00385at 406.373 kb on - strand, within MPMX20_00385at 406.375 kb on + strand, within MPMX20_00385at 406.375 kb on + strand, within MPMX20_00385at 406.378 kb on - strand, within MPMX20_00385at 406.487 kb on + strandat 406.487 kb on + strandat 406.487 kb on + strandat 406.495 kb on - strandat 406.519 kb on + strandat 406.534 kb on + strandat 406.534 kb on + strandat 406.534 kb on + strandat 406.556 kb on + strandat 406.564 kb on - strandat 406.573 kb on - strandat 406.601 kb on - strand, within MPMX20_00386at 406.668 kb on + strand, within MPMX20_00386at 406.668 kb on + strand, within MPMX20_00386at 406.676 kb on - strand, within MPMX20_00386at 406.676 kb on - strand, within MPMX20_00386at 406.715 kb on + strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.772 kb on - strand, within MPMX20_00387at 406.774 kb on + strand, within MPMX20_00387at 406.774 kb on + strand, within MPMX20_00387at 406.777 kb on - strand, within MPMX20_00387at 406.782 kb on - strand, within MPMX20_00387at 406.827 kb on + strandat 406.872 kb on + strandat 406.893 kb on + strand, within MPMX20_00388at 406.966 kb on + strandat 406.976 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.981 kb on + strandat 406.984 kb on - strandat 406.989 kb on - strandat 407.052 kb on - strandat 407.067 kb on + strandat 407.074 kb on + strandat 407.082 kb on - strandat 407.140 kb on + strand, within MPMX20_00389at 407.142 kb on - strand, within MPMX20_00389at 407.226 kb on - strand, within MPMX20_00389at 407.247 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.305 kb on + strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.313 kb on - strand, within MPMX20_00389at 407.402 kb on - strandat 407.418 kb on - strandat 407.433 kb on - strandat 407.472 kb on - strandat 407.579 kb on - strand, within MPMX20_00390at 407.584 kb on - strand, within MPMX20_00390at 407.595 kb on - strand, within MPMX20_00390at 407.627 kb on - strand, within MPMX20_00390

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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405,564 + MPMX20_00384 0.88 -0.4
405,607 + -1.5
405,609 - +0.3
405,609 - +1.0
405,612 + -2.2
405,612 + -0.6
405,612 + -0.1
405,620 - -1.6
405,620 - -0.5
405,620 - +0.4
405,620 - -1.0
405,620 - +0.3
405,642 - -0.6
405,652 - -2.4
405,652 - +1.0
405,654 - -0.4
405,656 + -2.2
405,656 + +0.6
405,659 - -1.3
405,663 + -1.5
405,667 + -2.7
405,697 + -1.2
405,712 - +0.6
405,718 + -1.0
405,735 + -1.5
405,736 - -0.1
405,736 - -0.2
405,743 - -1.0
405,769 + MPMX20_00385 0.11 -1.1
405,861 + MPMX20_00385 0.21 -0.7
405,899 - MPMX20_00385 0.26 -2.3
405,918 + MPMX20_00385 0.28 -2.6
405,923 + MPMX20_00385 0.28 -2.8
405,940 - MPMX20_00385 0.30 -1.2
405,987 + MPMX20_00385 0.36 -0.1
406,019 + MPMX20_00385 0.40 -1.4
406,055 + MPMX20_00385 0.44 -1.6
406,125 + MPMX20_00385 0.52 -0.4
406,155 + MPMX20_00385 0.55 -2.3
406,155 + MPMX20_00385 0.55 -2.6
406,181 - MPMX20_00385 0.58 +0.6
406,203 - MPMX20_00385 0.61 +0.4
406,222 - MPMX20_00385 0.63 +0.2
406,224 + MPMX20_00385 0.63 -0.1
406,236 + MPMX20_00385 0.65 -2.5
406,327 + MPMX20_00385 0.75 -0.8
406,365 + MPMX20_00385 0.80 -2.3
406,373 - MPMX20_00385 0.81 +0.1
406,375 + MPMX20_00385 0.81 -1.3
406,375 + MPMX20_00385 0.81 -3.2
406,378 - MPMX20_00385 0.81 +0.3
406,487 + -4.3
406,487 + -0.2
406,487 + -2.6
406,495 - -3.5
406,519 + +0.5
406,534 + -1.9
406,534 + -2.0
406,534 + +1.0
406,556 + -1.3
406,564 - -2.3
406,573 - -0.2
406,601 - MPMX20_00386 0.30 +1.0
406,668 + MPMX20_00386 0.81 -3.0
406,668 + MPMX20_00386 0.81 -0.3
406,676 - MPMX20_00386 0.87 +2.0
406,676 - MPMX20_00386 0.87 +0.3
406,715 + MPMX20_00387 0.10 +0.6
406,772 - MPMX20_00387 0.61 +0.1
406,772 - MPMX20_00387 0.61 -1.4
406,772 - MPMX20_00387 0.61 +1.6
406,774 + MPMX20_00387 0.63 -0.4
406,774 + MPMX20_00387 0.63 +0.6
406,777 - MPMX20_00387 0.66 +0.8
406,782 - MPMX20_00387 0.70 -0.8
406,827 + -1.8
406,872 + +0.2
406,893 + MPMX20_00388 0.25 -2.6
406,966 + -2.4
406,976 + -3.1
406,981 + -1.6
406,981 + -2.3
406,981 + -3.9
406,981 + -2.2
406,981 + -2.9
406,984 - +2.1
406,989 - -2.2
407,052 - -1.1
407,067 + -1.7
407,074 + -2.1
407,082 - -1.3
407,140 + MPMX20_00389 0.22 -0.4
407,142 - MPMX20_00389 0.23 -2.1
407,226 - MPMX20_00389 0.44 -0.5
407,247 + MPMX20_00389 0.50 +1.0
407,305 + MPMX20_00389 0.65 -1.9
407,305 + MPMX20_00389 0.65 +2.9
407,313 - MPMX20_00389 0.67 -0.4
407,313 - MPMX20_00389 0.67 +1.7
407,313 - MPMX20_00389 0.67 -2.3
407,402 - -1.1
407,418 - +1.0
407,433 - -1.2
407,472 - -0.1
407,579 - MPMX20_00390 0.24 +4.2
407,584 - MPMX20_00390 0.25 -2.2
407,595 - MPMX20_00390 0.27 +3.1
407,627 - MPMX20_00390 0.35 +0.2

Or see this region's nucleotide sequence