Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00298

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00297 and MPMX20_00298 overlap by 1 nucleotidesMPMX20_00298 and MPMX20_00299 are separated by 10 nucleotidesMPMX20_00299 and MPMX20_00300 are separated by 84 nucleotides MPMX20_00297: MPMX20_00297 - putative sugar kinase YdjH, at 317,680 to 318,684 _00297 MPMX20_00298: MPMX20_00298 - putative fructose-bisphosphate aldolase, at 318,684 to 319,544 _00298 MPMX20_00299: MPMX20_00299 - hypothetical protein, at 319,555 to 320,241 _00299 MPMX20_00300: MPMX20_00300 - Ribose import binding protein RbsB, at 320,326 to 321,267 _00300 Position (kb) 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 317.770 kb on + strandat 317.770 kb on + strandat 317.832 kb on - strand, within MPMX20_00297at 317.832 kb on - strand, within MPMX20_00297at 317.842 kb on + strand, within MPMX20_00297at 317.849 kb on - strand, within MPMX20_00297at 317.897 kb on - strand, within MPMX20_00297at 317.905 kb on - strand, within MPMX20_00297at 317.922 kb on + strand, within MPMX20_00297at 317.948 kb on - strand, within MPMX20_00297at 317.981 kb on + strand, within MPMX20_00297at 318.026 kb on + strand, within MPMX20_00297at 318.053 kb on - strand, within MPMX20_00297at 318.116 kb on - strand, within MPMX20_00297at 318.178 kb on - strand, within MPMX20_00297at 318.204 kb on + strand, within MPMX20_00297at 318.212 kb on - strand, within MPMX20_00297at 318.212 kb on - strand, within MPMX20_00297at 318.236 kb on + strand, within MPMX20_00297at 318.240 kb on + strand, within MPMX20_00297at 318.240 kb on + strand, within MPMX20_00297at 318.248 kb on - strand, within MPMX20_00297at 318.250 kb on + strand, within MPMX20_00297at 318.313 kb on + strand, within MPMX20_00297at 318.377 kb on + strand, within MPMX20_00297at 318.377 kb on + strand, within MPMX20_00297at 318.377 kb on + strand, within MPMX20_00297at 318.377 kb on + strand, within MPMX20_00297at 318.377 kb on + strand, within MPMX20_00297at 318.377 kb on + strand, within MPMX20_00297at 318.384 kb on - strand, within MPMX20_00297at 318.385 kb on - strand, within MPMX20_00297at 318.390 kb on + strand, within MPMX20_00297at 318.390 kb on + strand, within MPMX20_00297at 318.398 kb on - strand, within MPMX20_00297at 318.398 kb on - strand, within MPMX20_00297at 318.398 kb on - strand, within MPMX20_00297at 318.409 kb on + strand, within MPMX20_00297at 318.410 kb on + strand, within MPMX20_00297at 318.418 kb on - strand, within MPMX20_00297at 318.445 kb on - strand, within MPMX20_00297at 318.489 kb on - strand, within MPMX20_00297at 318.495 kb on + strand, within MPMX20_00297at 318.548 kb on + strand, within MPMX20_00297at 318.681 kb on + strandat 318.692 kb on + strandat 318.748 kb on + strandat 318.754 kb on - strandat 318.754 kb on - strandat 319.013 kb on - strand, within MPMX20_00298at 319.076 kb on - strand, within MPMX20_00298at 319.148 kb on + strand, within MPMX20_00298at 319.176 kb on - strand, within MPMX20_00298at 319.187 kb on - strand, within MPMX20_00298at 319.246 kb on + strand, within MPMX20_00298at 319.248 kb on + strand, within MPMX20_00298at 319.248 kb on + strand, within MPMX20_00298at 319.256 kb on - strand, within MPMX20_00298at 319.256 kb on - strand, within MPMX20_00298at 319.256 kb on - strand, within MPMX20_00298at 319.256 kb on - strand, within MPMX20_00298at 319.256 kb on - strand, within MPMX20_00298at 319.256 kb on - strand, within MPMX20_00298at 319.270 kb on + strand, within MPMX20_00298at 319.278 kb on - strand, within MPMX20_00298at 319.303 kb on + strand, within MPMX20_00298at 319.303 kb on + strand, within MPMX20_00298at 319.303 kb on + strand, within MPMX20_00298at 319.305 kb on + strand, within MPMX20_00298at 319.313 kb on - strand, within MPMX20_00298at 319.337 kb on + strand, within MPMX20_00298at 319.337 kb on + strand, within MPMX20_00298at 319.337 kb on + strand, within MPMX20_00298at 319.337 kb on + strand, within MPMX20_00298at 319.345 kb on - strand, within MPMX20_00298at 319.365 kb on + strand, within MPMX20_00298at 319.420 kb on + strand, within MPMX20_00298at 319.445 kb on - strand, within MPMX20_00298at 319.472 kb on + strandat 319.480 kb on - strandat 319.497 kb on + strandat 319.509 kb on - strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.511 kb on + strandat 319.519 kb on - strandat 319.519 kb on - strandat 319.519 kb on - strandat 319.569 kb on + strandat 319.569 kb on + strandat 319.573 kb on + strandat 319.576 kb on - strandat 319.577 kb on - strandat 319.588 kb on + strandat 319.588 kb on + strandat 319.596 kb on - strandat 319.659 kb on - strand, within MPMX20_00299at 319.666 kb on + strand, within MPMX20_00299at 319.693 kb on - strand, within MPMX20_00299at 319.706 kb on - strand, within MPMX20_00299at 319.737 kb on + strand, within MPMX20_00299at 319.737 kb on - strand, within MPMX20_00299at 319.745 kb on - strand, within MPMX20_00299at 319.745 kb on - strand, within MPMX20_00299at 319.767 kb on - strand, within MPMX20_00299at 319.773 kb on + strand, within MPMX20_00299at 319.798 kb on + strand, within MPMX20_00299at 319.798 kb on + strand, within MPMX20_00299at 319.798 kb on + strand, within MPMX20_00299at 319.799 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.806 kb on - strand, within MPMX20_00299at 319.811 kb on - strand, within MPMX20_00299at 319.940 kb on + strand, within MPMX20_00299at 319.943 kb on - strand, within MPMX20_00299at 319.955 kb on + strand, within MPMX20_00299at 320.025 kb on + strand, within MPMX20_00299at 320.025 kb on + strand, within MPMX20_00299at 320.025 kb on + strand, within MPMX20_00299at 320.026 kb on + strand, within MPMX20_00299at 320.033 kb on - strand, within MPMX20_00299at 320.034 kb on - strand, within MPMX20_00299at 320.034 kb on - strand, within MPMX20_00299at 320.042 kb on - strand, within MPMX20_00299at 320.043 kb on - strand, within MPMX20_00299at 320.073 kb on - strand, within MPMX20_00299at 320.085 kb on + strand, within MPMX20_00299at 320.093 kb on - strand, within MPMX20_00299at 320.132 kb on - strand, within MPMX20_00299at 320.132 kb on - strand, within MPMX20_00299at 320.148 kb on + strand, within MPMX20_00299at 320.164 kb on + strand, within MPMX20_00299at 320.178 kb on - strandat 320.202 kb on - strandat 320.248 kb on + strandat 320.256 kb on - strandat 320.270 kb on + strandat 320.278 kb on - strandat 320.300 kb on + strandat 320.331 kb on + strandat 320.336 kb on + strandat 320.344 kb on - strandat 320.399 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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317,770 + -1.1
317,770 + -1.1
317,832 - MPMX20_00297 0.15 -2.1
317,832 - MPMX20_00297 0.15 +0.4
317,842 + MPMX20_00297 0.16 +0.3
317,849 - MPMX20_00297 0.17 +0.6
317,897 - MPMX20_00297 0.22 -1.4
317,905 - MPMX20_00297 0.22 -2.5
317,922 + MPMX20_00297 0.24 -0.5
317,948 - MPMX20_00297 0.27 -1.2
317,981 + MPMX20_00297 0.30 -2.8
318,026 + MPMX20_00297 0.34 -2.4
318,053 - MPMX20_00297 0.37 -0.0
318,116 - MPMX20_00297 0.43 +0.0
318,178 - MPMX20_00297 0.50 +0.8
318,204 + MPMX20_00297 0.52 -0.5
318,212 - MPMX20_00297 0.53 +0.3
318,212 - MPMX20_00297 0.53 +5.8
318,236 + MPMX20_00297 0.55 +0.8
318,240 + MPMX20_00297 0.56 -1.8
318,240 + MPMX20_00297 0.56 +0.4
318,248 - MPMX20_00297 0.57 -0.5
318,250 + MPMX20_00297 0.57 -3.4
318,313 + MPMX20_00297 0.63 -0.3
318,377 + MPMX20_00297 0.69 -0.8
318,377 + MPMX20_00297 0.69 -1.5
318,377 + MPMX20_00297 0.69 -2.6
318,377 + MPMX20_00297 0.69 +0.5
318,377 + MPMX20_00297 0.69 -1.1
318,377 + MPMX20_00297 0.69 -3.2
318,384 - MPMX20_00297 0.70 +2.6
318,385 - MPMX20_00297 0.70 +0.8
318,390 + MPMX20_00297 0.71 +1.0
318,390 + MPMX20_00297 0.71 -0.5
318,398 - MPMX20_00297 0.71 +0.6
318,398 - MPMX20_00297 0.71 -1.3
318,398 - MPMX20_00297 0.71 -2.6
318,409 + MPMX20_00297 0.73 +1.5
318,410 + MPMX20_00297 0.73 +0.3
318,418 - MPMX20_00297 0.73 +2.6
318,445 - MPMX20_00297 0.76 +0.3
318,489 - MPMX20_00297 0.80 -1.0
318,495 + MPMX20_00297 0.81 +0.6
318,548 + MPMX20_00297 0.86 +1.6
318,681 + -0.2
318,692 + +0.9
318,748 + +1.4
318,754 - +1.0
318,754 - +0.7
319,013 - MPMX20_00298 0.38 +1.6
319,076 - MPMX20_00298 0.46 +0.3
319,148 + MPMX20_00298 0.54 +0.8
319,176 - MPMX20_00298 0.57 -1.2
319,187 - MPMX20_00298 0.58 -2.0
319,246 + MPMX20_00298 0.65 +0.5
319,248 + MPMX20_00298 0.66 +0.7
319,248 + MPMX20_00298 0.66 +0.9
319,256 - MPMX20_00298 0.66 -0.2
319,256 - MPMX20_00298 0.66 -1.3
319,256 - MPMX20_00298 0.66 -1.1
319,256 - MPMX20_00298 0.66 +0.9
319,256 - MPMX20_00298 0.66 +1.3
319,256 - MPMX20_00298 0.66 +1.5
319,270 + MPMX20_00298 0.68 -0.7
319,278 - MPMX20_00298 0.69 -2.0
319,303 + MPMX20_00298 0.72 -0.4
319,303 + MPMX20_00298 0.72 +3.2
319,303 + MPMX20_00298 0.72 -0.7
319,305 + MPMX20_00298 0.72 +0.5
319,313 - MPMX20_00298 0.73 -0.2
319,337 + MPMX20_00298 0.76 -0.4
319,337 + MPMX20_00298 0.76 +0.3
319,337 + MPMX20_00298 0.76 +0.3
319,337 + MPMX20_00298 0.76 -0.2
319,345 - MPMX20_00298 0.77 +0.4
319,365 + MPMX20_00298 0.79 +1.3
319,420 + MPMX20_00298 0.85 -0.4
319,445 - MPMX20_00298 0.88 -1.1
319,472 + -0.4
319,480 - -2.2
319,497 + -2.8
319,509 - +0.6
319,511 + -1.8
319,511 + -0.2
319,511 + -1.8
319,511 + -0.4
319,511 + +1.0
319,519 - +3.2
319,519 - -1.2
319,519 - -1.2
319,569 + +1.6
319,569 + -1.2
319,573 + -0.2
319,576 - -0.2
319,577 - +1.3
319,588 + -0.7
319,588 + +0.3
319,596 - -3.1
319,659 - MPMX20_00299 0.15 -0.5
319,666 + MPMX20_00299 0.16 +1.0
319,693 - MPMX20_00299 0.20 +0.6
319,706 - MPMX20_00299 0.22 -0.4
319,737 + MPMX20_00299 0.26 -1.1
319,737 - MPMX20_00299 0.26 +0.7
319,745 - MPMX20_00299 0.28 -0.4
319,745 - MPMX20_00299 0.28 +0.8
319,767 - MPMX20_00299 0.31 -1.0
319,773 + MPMX20_00299 0.32 -1.5
319,798 + MPMX20_00299 0.35 -1.8
319,798 + MPMX20_00299 0.35 -1.6
319,798 + MPMX20_00299 0.35 +0.7
319,799 - MPMX20_00299 0.36 -2.0
319,806 - MPMX20_00299 0.37 -1.2
319,806 - MPMX20_00299 0.37 +1.3
319,806 - MPMX20_00299 0.37 +0.6
319,806 - MPMX20_00299 0.37 -1.2
319,806 - MPMX20_00299 0.37 -0.5
319,806 - MPMX20_00299 0.37 -2.1
319,811 - MPMX20_00299 0.37 -1.0
319,940 + MPMX20_00299 0.56 +0.4
319,943 - MPMX20_00299 0.56 +0.6
319,955 + MPMX20_00299 0.58 +1.0
320,025 + MPMX20_00299 0.68 -1.4
320,025 + MPMX20_00299 0.68 -1.3
320,025 + MPMX20_00299 0.68 +0.3
320,026 + MPMX20_00299 0.69 +1.5
320,033 - MPMX20_00299 0.70 -0.6
320,034 - MPMX20_00299 0.70 -1.1
320,034 - MPMX20_00299 0.70 +0.3
320,042 - MPMX20_00299 0.71 +0.8
320,043 - MPMX20_00299 0.71 -0.2
320,073 - MPMX20_00299 0.75 -1.2
320,085 + MPMX20_00299 0.77 -0.8
320,093 - MPMX20_00299 0.78 -0.6
320,132 - MPMX20_00299 0.84 -2.9
320,132 - MPMX20_00299 0.84 -0.6
320,148 + MPMX20_00299 0.86 +2.9
320,164 + MPMX20_00299 0.89 +2.6
320,178 - -1.1
320,202 - +0.2
320,248 + +0.2
320,256 - -0.5
320,270 + +2.4
320,278 - -2.8
320,300 + -0.9
320,331 + -0.2
320,336 + +2.6
320,344 - +0.5
320,399 - -0.8

Or see this region's nucleotide sequence