Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00191 and MPMX20_00192 are separated by 9 nucleotides MPMX20_00192 and MPMX20_00193 are separated by 10 nucleotides MPMX20_00193 and MPMX20_00194 overlap by 4 nucleotides
MPMX20_00191: MPMX20_00191 - Dipeptide transport system permease protein DppB, at 200,147 to 201,166
_00191
MPMX20_00192: MPMX20_00192 - Dipeptide transport system permease protein DppC, at 201,176 to 202,078
_00192
MPMX20_00193: MPMX20_00193 - Dipeptide transport ATP-binding protein DppD, at 202,089 to 203,072
_00193
MPMX20_00194: MPMX20_00194 - Vitamin B12 import ATP-binding protein BtuD, at 203,069 to 204,082
_00194
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 200.177 kb on - strand at 200.299 kb on + strand, within MPMX20_00191 at 200.310 kb on + strand, within MPMX20_00191 at 200.315 kb on + strand, within MPMX20_00191 at 200.318 kb on - strand, within MPMX20_00191 at 200.328 kb on - strand, within MPMX20_00191 at 200.418 kb on + strand, within MPMX20_00191 at 200.485 kb on + strand, within MPMX20_00191 at 200.493 kb on - strand, within MPMX20_00191 at 200.508 kb on - strand, within MPMX20_00191 at 200.563 kb on + strand, within MPMX20_00191 at 200.610 kb on - strand, within MPMX20_00191 at 200.631 kb on - strand, within MPMX20_00191 at 200.725 kb on - strand, within MPMX20_00191 at 200.731 kb on + strand, within MPMX20_00191 at 200.757 kb on + strand, within MPMX20_00191 at 200.784 kb on + strand, within MPMX20_00191 at 200.818 kb on - strand, within MPMX20_00191 at 200.831 kb on - strand, within MPMX20_00191 at 200.869 kb on + strand, within MPMX20_00191 at 200.876 kb on + strand, within MPMX20_00191 at 200.884 kb on - strand, within MPMX20_00191 at 200.901 kb on - strand, within MPMX20_00191 at 200.914 kb on + strand, within MPMX20_00191 at 200.914 kb on + strand, within MPMX20_00191 at 200.914 kb on + strand, within MPMX20_00191 at 200.919 kb on + strand, within MPMX20_00191 at 200.922 kb on - strand, within MPMX20_00191 at 200.956 kb on + strand, within MPMX20_00191 at 201.033 kb on + strand, within MPMX20_00191 at 201.038 kb on + strand, within MPMX20_00191 at 201.046 kb on - strand, within MPMX20_00191 at 201.062 kb on + strand, within MPMX20_00191 at 201.070 kb on - strand at 201.072 kb on + strand at 201.080 kb on - strand at 201.080 kb on - strand at 201.109 kb on + strand at 201.132 kb on - strand at 201.132 kb on - strand at 201.178 kb on + strand at 201.249 kb on + strand at 201.314 kb on + strand, within MPMX20_00192 at 201.337 kb on + strand, within MPMX20_00192 at 201.377 kb on + strand, within MPMX20_00192 at 201.404 kb on - strand, within MPMX20_00192 at 201.451 kb on - strand, within MPMX20_00192 at 201.452 kb on + strand, within MPMX20_00192 at 201.453 kb on - strand, within MPMX20_00192 at 201.460 kb on - strand, within MPMX20_00192 at 201.673 kb on + strand, within MPMX20_00192 at 201.674 kb on + strand, within MPMX20_00192 at 201.674 kb on + strand, within MPMX20_00192 at 201.681 kb on - strand, within MPMX20_00192 at 201.738 kb on - strand, within MPMX20_00192 at 201.748 kb on - strand, within MPMX20_00192 at 201.796 kb on - strand, within MPMX20_00192 at 201.796 kb on - strand, within MPMX20_00192 at 201.825 kb on - strand, within MPMX20_00192 at 201.903 kb on - strand, within MPMX20_00192 at 201.903 kb on - strand, within MPMX20_00192 at 201.917 kb on + strand, within MPMX20_00192 at 201.977 kb on + strand, within MPMX20_00192 at 201.977 kb on + strand, within MPMX20_00192 at 201.977 kb on + strand, within MPMX20_00192 at 201.977 kb on + strand, within MPMX20_00192 at 201.985 kb on - strand, within MPMX20_00192 at 202.025 kb on + strand at 202.143 kb on + strand at 202.174 kb on + strand at 202.182 kb on - strand at 202.184 kb on + strand at 202.288 kb on + strand, within MPMX20_00193 at 202.288 kb on + strand, within MPMX20_00193 at 202.302 kb on + strand, within MPMX20_00193 at 202.311 kb on - strand, within MPMX20_00193 at 202.388 kb on - strand, within MPMX20_00193 at 202.390 kb on + strand, within MPMX20_00193 at 202.390 kb on + strand, within MPMX20_00193 at 202.398 kb on - strand, within MPMX20_00193 at 202.532 kb on - strand, within MPMX20_00193 at 202.566 kb on - strand, within MPMX20_00193 at 202.566 kb on - strand, within MPMX20_00193 at 202.700 kb on - strand, within MPMX20_00193 at 202.723 kb on - strand, within MPMX20_00193 at 202.734 kb on - strand, within MPMX20_00193 at 202.739 kb on + strand, within MPMX20_00193 at 202.776 kb on + strand, within MPMX20_00193 at 202.784 kb on - strand, within MPMX20_00193 at 202.784 kb on - strand, within MPMX20_00193 at 202.839 kb on - strand, within MPMX20_00193 at 202.874 kb on + strand, within MPMX20_00193 at 202.877 kb on - strand, within MPMX20_00193 at 202.877 kb on - strand, within MPMX20_00193 at 202.882 kb on - strand, within MPMX20_00193 at 202.904 kb on - strand, within MPMX20_00193 at 202.929 kb on + strand, within MPMX20_00193 at 202.929 kb on + strand, within MPMX20_00193 at 202.979 kb on - strand at 202.979 kb on - strand at 202.998 kb on - strand at 203.041 kb on - strand at 203.059 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 200,177 - -1.3 200,299 + MPMX20_00191 0.15 +2.2 200,310 + MPMX20_00191 0.16 -1.4 200,315 + MPMX20_00191 0.16 -2.9 200,318 - MPMX20_00191 0.17 -1.8 200,328 - MPMX20_00191 0.18 +0.6 200,418 + MPMX20_00191 0.27 +0.3 200,485 + MPMX20_00191 0.33 -2.6 200,493 - MPMX20_00191 0.34 -1.7 200,508 - MPMX20_00191 0.35 -1.3 200,563 + MPMX20_00191 0.41 +1.0 200,610 - MPMX20_00191 0.45 +0.7 200,631 - MPMX20_00191 0.47 -0.7 200,725 - MPMX20_00191 0.57 -0.3 200,731 + MPMX20_00191 0.57 -3.1 200,757 + MPMX20_00191 0.60 +0.8 200,784 + MPMX20_00191 0.62 +0.6 200,818 - MPMX20_00191 0.66 -1.1 200,831 - MPMX20_00191 0.67 -3.3 200,869 + MPMX20_00191 0.71 -1.4 200,876 + MPMX20_00191 0.71 +1.4 200,884 - MPMX20_00191 0.72 -0.7 200,901 - MPMX20_00191 0.74 -1.3 200,914 + MPMX20_00191 0.75 +0.8 200,914 + MPMX20_00191 0.75 +1.1 200,914 + MPMX20_00191 0.75 -2.1 200,919 + MPMX20_00191 0.76 -0.4 200,922 - MPMX20_00191 0.76 -2.6 200,956 + MPMX20_00191 0.79 +0.3 201,033 + MPMX20_00191 0.87 +1.1 201,038 + MPMX20_00191 0.87 +1.3 201,046 - MPMX20_00191 0.88 -2.8 201,062 + MPMX20_00191 0.90 -2.6 201,070 - -0.5 201,072 + -0.9 201,080 - +0.0 201,080 - +1.4 201,109 + -0.2 201,132 - +0.6 201,132 - -0.2 201,178 + -0.4 201,249 + -1.2 201,314 + MPMX20_00192 0.15 -0.4 201,337 + MPMX20_00192 0.18 -0.3 201,377 + MPMX20_00192 0.22 -1.4 201,404 - MPMX20_00192 0.25 -1.8 201,451 - MPMX20_00192 0.30 +0.8 201,452 + MPMX20_00192 0.31 +1.1 201,453 - MPMX20_00192 0.31 -0.2 201,460 - MPMX20_00192 0.31 +4.8 201,673 + MPMX20_00192 0.55 -0.8 201,674 + MPMX20_00192 0.55 -1.2 201,674 + MPMX20_00192 0.55 -1.4 201,681 - MPMX20_00192 0.56 +0.6 201,738 - MPMX20_00192 0.62 -1.9 201,748 - MPMX20_00192 0.63 +0.9 201,796 - MPMX20_00192 0.69 -2.3 201,796 - MPMX20_00192 0.69 -1.7 201,825 - MPMX20_00192 0.72 +2.6 201,903 - MPMX20_00192 0.81 +0.8 201,903 - MPMX20_00192 0.81 -1.3 201,917 + MPMX20_00192 0.82 -3.5 201,977 + MPMX20_00192 0.89 -2.4 201,977 + MPMX20_00192 0.89 -1.8 201,977 + MPMX20_00192 0.89 -0.3 201,977 + MPMX20_00192 0.89 +1.6 201,985 - MPMX20_00192 0.90 -2.2 202,025 + -2.3 202,143 + +1.3 202,174 + -2.5 202,182 - +0.1 202,184 + +0.1 202,288 + MPMX20_00193 0.20 -0.5 202,288 + MPMX20_00193 0.20 -0.5 202,302 + MPMX20_00193 0.22 -1.2 202,311 - MPMX20_00193 0.23 +0.9 202,388 - MPMX20_00193 0.30 -1.5 202,390 + MPMX20_00193 0.31 -1.0 202,390 + MPMX20_00193 0.31 -1.5 202,398 - MPMX20_00193 0.31 -0.5 202,532 - MPMX20_00193 0.45 +0.4 202,566 - MPMX20_00193 0.48 -0.5 202,566 - MPMX20_00193 0.48 +1.0 202,700 - MPMX20_00193 0.62 -0.7 202,723 - MPMX20_00193 0.64 +0.8 202,734 - MPMX20_00193 0.66 -0.1 202,739 + MPMX20_00193 0.66 -2.8 202,776 + MPMX20_00193 0.70 +1.1 202,784 - MPMX20_00193 0.71 +1.3 202,784 - MPMX20_00193 0.71 -0.5 202,839 - MPMX20_00193 0.76 +3.4 202,874 + MPMX20_00193 0.80 -1.4 202,877 - MPMX20_00193 0.80 -0.8 202,877 - MPMX20_00193 0.80 -0.5 202,882 - MPMX20_00193 0.81 +0.3 202,904 - MPMX20_00193 0.83 +0.5 202,929 + MPMX20_00193 0.85 -0.2 202,929 + MPMX20_00193 0.85 +0.3 202,979 - +0.1 202,979 - +0.8 202,998 - -0.2 203,041 - -1.3 203,059 + +0.1
Or see this region's nucleotide sequence