Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00162

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00161 and MPMX20_00162 are separated by 33 nucleotidesMPMX20_00162 and MPMX20_00163 overlap by 23 nucleotides MPMX20_00161: MPMX20_00161 - Xylose operon regulatory protein, at 165,730 to 166,908 _00161 MPMX20_00162: MPMX20_00162 - Xylose transport system permease protein XylH, at 166,942 to 168,123 _00162 MPMX20_00163: MPMX20_00163 - Xylose import ATP-binding protein XylG, at 168,101 to 169,642 _00163 Position (kb) 166 167 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 165.952 kb on + strand, within MPMX20_00161at 165.982 kb on + strand, within MPMX20_00161at 165.988 kb on - strand, within MPMX20_00161at 165.998 kb on + strand, within MPMX20_00161at 166.006 kb on - strand, within MPMX20_00161at 166.087 kb on + strand, within MPMX20_00161at 166.095 kb on - strand, within MPMX20_00161at 166.095 kb on - strand, within MPMX20_00161at 166.106 kb on + strand, within MPMX20_00161at 166.114 kb on - strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.190 kb on + strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.198 kb on - strand, within MPMX20_00161at 166.237 kb on + strand, within MPMX20_00161at 166.242 kb on + strand, within MPMX20_00161at 166.291 kb on + strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.299 kb on - strand, within MPMX20_00161at 166.381 kb on + strand, within MPMX20_00161at 166.424 kb on + strand, within MPMX20_00161at 166.492 kb on - strand, within MPMX20_00161at 166.497 kb on + strand, within MPMX20_00161at 166.510 kb on - strand, within MPMX20_00161at 166.548 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.583 kb on + strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.591 kb on - strand, within MPMX20_00161at 166.612 kb on + strand, within MPMX20_00161at 166.618 kb on - strand, within MPMX20_00161at 166.633 kb on + strand, within MPMX20_00161at 166.729 kb on + strand, within MPMX20_00161at 166.732 kb on - strand, within MPMX20_00161at 166.748 kb on + strand, within MPMX20_00161at 166.756 kb on - strand, within MPMX20_00161at 166.769 kb on + strand, within MPMX20_00161at 166.843 kb on - strandat 166.843 kb on - strandat 166.845 kb on + strandat 166.845 kb on + strandat 166.847 kb on - strandat 166.852 kb on + strandat 166.852 kb on + strandat 166.852 kb on + strandat 166.853 kb on - strandat 166.859 kb on + strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.860 kb on - strandat 166.867 kb on - strandat 166.876 kb on - strandat 166.969 kb on + strandat 166.972 kb on - strandat 166.977 kb on - strandat 167.053 kb on - strandat 167.106 kb on - strand, within MPMX20_00162at 167.162 kb on - strand, within MPMX20_00162at 167.172 kb on - strand, within MPMX20_00162at 167.172 kb on - strand, within MPMX20_00162at 167.270 kb on + strand, within MPMX20_00162at 167.278 kb on - strand, within MPMX20_00162at 167.278 kb on - strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.294 kb on + strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.302 kb on - strand, within MPMX20_00162at 167.348 kb on + strand, within MPMX20_00162at 167.356 kb on - strand, within MPMX20_00162at 167.460 kb on + strand, within MPMX20_00162at 167.565 kb on - strand, within MPMX20_00162at 167.594 kb on + strand, within MPMX20_00162at 167.602 kb on - strand, within MPMX20_00162at 167.610 kb on - strand, within MPMX20_00162at 167.629 kb on + strand, within MPMX20_00162at 167.634 kb on + strand, within MPMX20_00162at 167.636 kb on - strand, within MPMX20_00162at 167.636 kb on - strand, within MPMX20_00162at 167.733 kb on + strand, within MPMX20_00162at 167.733 kb on + strand, within MPMX20_00162at 167.743 kb on + strand, within MPMX20_00162at 167.761 kb on - strand, within MPMX20_00162at 167.837 kb on + strand, within MPMX20_00162at 167.850 kb on - strand, within MPMX20_00162at 167.946 kb on + strand, within MPMX20_00162at 167.954 kb on - strand, within MPMX20_00162at 167.954 kb on - strand, within MPMX20_00162at 168.134 kb on + strandat 168.142 kb on - strandat 168.142 kb on - strandat 168.142 kb on - strandat 168.142 kb on - strandat 168.142 kb on - strandat 168.142 kb on - strandat 168.147 kb on + strandat 168.169 kb on + strandat 168.169 kb on + strandat 168.177 kb on - strandat 168.183 kb on - strandat 168.207 kb on + strandat 168.215 kb on - strandat 168.250 kb on + strandat 168.294 kb on - strand, within MPMX20_00163at 168.368 kb on - strand, within MPMX20_00163at 168.372 kb on + strand, within MPMX20_00163at 168.392 kb on + strand, within MPMX20_00163at 168.397 kb on + strand, within MPMX20_00163at 168.405 kb on - strand, within MPMX20_00163at 168.430 kb on - strand, within MPMX20_00163at 168.442 kb on + strand, within MPMX20_00163at 168.442 kb on + strand, within MPMX20_00163at 168.450 kb on - strand, within MPMX20_00163at 168.450 kb on - strand, within MPMX20_00163at 168.468 kb on + strand, within MPMX20_00163at 168.494 kb on + strand, within MPMX20_00163at 168.507 kb on + strand, within MPMX20_00163at 168.507 kb on - strand, within MPMX20_00163at 168.518 kb on - strand, within MPMX20_00163at 168.521 kb on + strand, within MPMX20_00163at 168.526 kb on + strand, within MPMX20_00163at 168.531 kb on + strand, within MPMX20_00163at 168.531 kb on + strand, within MPMX20_00163at 168.539 kb on - strand, within MPMX20_00163at 168.623 kb on + strand, within MPMX20_00163at 168.741 kb on - strand, within MPMX20_00163at 168.750 kb on + strand, within MPMX20_00163at 168.750 kb on + strand, within MPMX20_00163at 168.758 kb on - strand, within MPMX20_00163at 168.758 kb on - strand, within MPMX20_00163at 168.758 kb on - strand, within MPMX20_00163at 168.761 kb on + strand, within MPMX20_00163at 168.776 kb on - strand, within MPMX20_00163at 168.854 kb on - strand, within MPMX20_00163at 168.863 kb on + strand, within MPMX20_00163at 168.965 kb on + strand, within MPMX20_00163at 168.970 kb on + strand, within MPMX20_00163at 168.997 kb on + strand, within MPMX20_00163at 169.002 kb on + strand, within MPMX20_00163at 169.011 kb on - strand, within MPMX20_00163at 169.031 kb on - strand, within MPMX20_00163at 169.058 kb on - strand, within MPMX20_00163at 169.092 kb on + strand, within MPMX20_00163at 169.092 kb on + strand, within MPMX20_00163at 169.092 kb on + strand, within MPMX20_00163at 169.092 kb on + strand, within MPMX20_00163at 169.107 kb on + strand, within MPMX20_00163at 169.115 kb on - strand, within MPMX20_00163

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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165,952 + MPMX20_00161 0.19 -0.5
165,982 + MPMX20_00161 0.21 -1.5
165,988 - MPMX20_00161 0.22 -0.7
165,998 + MPMX20_00161 0.23 -0.8
166,006 - MPMX20_00161 0.23 -0.8
166,087 + MPMX20_00161 0.30 -0.8
166,095 - MPMX20_00161 0.31 +0.3
166,095 - MPMX20_00161 0.31 -3.7
166,106 + MPMX20_00161 0.32 -0.4
166,114 - MPMX20_00161 0.33 +0.3
166,190 + MPMX20_00161 0.39 -3.9
166,190 + MPMX20_00161 0.39 -2.7
166,190 + MPMX20_00161 0.39 -0.9
166,198 - MPMX20_00161 0.40 +0.5
166,198 - MPMX20_00161 0.40 -1.9
166,198 - MPMX20_00161 0.40 +0.3
166,198 - MPMX20_00161 0.40 +0.3
166,237 + MPMX20_00161 0.43 +1.4
166,242 + MPMX20_00161 0.43 -0.6
166,291 + MPMX20_00161 0.48 +0.1
166,299 - MPMX20_00161 0.48 +0.4
166,299 - MPMX20_00161 0.48 +0.7
166,299 - MPMX20_00161 0.48 -1.7
166,299 - MPMX20_00161 0.48 -1.6
166,299 - MPMX20_00161 0.48 -0.1
166,381 + MPMX20_00161 0.55 -0.4
166,424 + MPMX20_00161 0.59 -1.7
166,492 - MPMX20_00161 0.65 -0.8
166,497 + MPMX20_00161 0.65 -0.5
166,510 - MPMX20_00161 0.66 +0.3
166,548 + MPMX20_00161 0.69 +0.6
166,583 + MPMX20_00161 0.72 -1.3
166,583 + MPMX20_00161 0.72 -0.9
166,583 + MPMX20_00161 0.72 +0.1
166,583 + MPMX20_00161 0.72 +1.7
166,591 - MPMX20_00161 0.73 +0.7
166,591 - MPMX20_00161 0.73 +0.4
166,591 - MPMX20_00161 0.73 -0.8
166,591 - MPMX20_00161 0.73 +1.7
166,612 + MPMX20_00161 0.75 +2.8
166,618 - MPMX20_00161 0.75 -1.1
166,633 + MPMX20_00161 0.77 +0.8
166,729 + MPMX20_00161 0.85 +0.6
166,732 - MPMX20_00161 0.85 -1.5
166,748 + MPMX20_00161 0.86 +1.8
166,756 - MPMX20_00161 0.87 -3.2
166,769 + MPMX20_00161 0.88 -3.3
166,843 - -0.4
166,843 - +3.4
166,845 + -0.1
166,845 + +1.3
166,847 - +0.8
166,852 + +0.0
166,852 + -0.4
166,852 + -0.6
166,853 - -1.1
166,859 + -0.3
166,860 - +0.3
166,860 - +3.0
166,860 - +2.7
166,860 - +2.1
166,860 - -1.2
166,867 - -1.3
166,876 - -0.5
166,969 + +1.6
166,972 - -2.4
166,977 - +0.8
167,053 - -0.4
167,106 - MPMX20_00162 0.14 -0.7
167,162 - MPMX20_00162 0.19 -0.2
167,172 - MPMX20_00162 0.19 +0.1
167,172 - MPMX20_00162 0.19 -2.4
167,270 + MPMX20_00162 0.28 +0.1
167,278 - MPMX20_00162 0.28 +1.3
167,278 - MPMX20_00162 0.28 +2.6
167,294 + MPMX20_00162 0.30 -3.4
167,294 + MPMX20_00162 0.30 -0.1
167,294 + MPMX20_00162 0.30 +0.7
167,294 + MPMX20_00162 0.30 -0.7
167,294 + MPMX20_00162 0.30 +1.4
167,294 + MPMX20_00162 0.30 +0.1
167,294 + MPMX20_00162 0.30 -1.9
167,302 - MPMX20_00162 0.30 -0.0
167,302 - MPMX20_00162 0.30 -0.5
167,302 - MPMX20_00162 0.30 +0.7
167,302 - MPMX20_00162 0.30 +1.2
167,302 - MPMX20_00162 0.30 -3.4
167,302 - MPMX20_00162 0.30 -0.5
167,348 + MPMX20_00162 0.34 -0.3
167,356 - MPMX20_00162 0.35 -2.0
167,460 + MPMX20_00162 0.44 +1.3
167,565 - MPMX20_00162 0.53 +0.6
167,594 + MPMX20_00162 0.55 +0.0
167,602 - MPMX20_00162 0.56 +0.6
167,610 - MPMX20_00162 0.57 +2.7
167,629 + MPMX20_00162 0.58 +1.3
167,634 + MPMX20_00162 0.59 -0.3
167,636 - MPMX20_00162 0.59 -1.4
167,636 - MPMX20_00162 0.59 +2.3
167,733 + MPMX20_00162 0.67 +0.2
167,733 + MPMX20_00162 0.67 +0.6
167,743 + MPMX20_00162 0.68 +0.8
167,761 - MPMX20_00162 0.69 -0.9
167,837 + MPMX20_00162 0.76 -0.2
167,850 - MPMX20_00162 0.77 +0.4
167,946 + MPMX20_00162 0.85 -0.4
167,954 - MPMX20_00162 0.86 +2.4
167,954 - MPMX20_00162 0.86 -2.5
168,134 + +1.7
168,142 - +1.2
168,142 - +0.3
168,142 - +1.7
168,142 - -2.8
168,142 - +0.7
168,142 - +1.1
168,147 + -0.8
168,169 + -1.5
168,169 + +0.1
168,177 - +0.3
168,183 - -0.3
168,207 + -0.2
168,215 - -2.1
168,250 + -0.4
168,294 - MPMX20_00163 0.13 +2.4
168,368 - MPMX20_00163 0.17 -1.5
168,372 + MPMX20_00163 0.18 -0.5
168,392 + MPMX20_00163 0.19 -1.6
168,397 + MPMX20_00163 0.19 -0.3
168,405 - MPMX20_00163 0.20 +0.3
168,430 - MPMX20_00163 0.21 +3.1
168,442 + MPMX20_00163 0.22 -1.0
168,442 + MPMX20_00163 0.22 -3.7
168,450 - MPMX20_00163 0.23 -2.6
168,450 - MPMX20_00163 0.23 +1.1
168,468 + MPMX20_00163 0.24 +0.1
168,494 + MPMX20_00163 0.25 +2.3
168,507 + MPMX20_00163 0.26 +0.6
168,507 - MPMX20_00163 0.26 -1.3
168,518 - MPMX20_00163 0.27 -1.0
168,521 + MPMX20_00163 0.27 -0.8
168,526 + MPMX20_00163 0.28 +3.9
168,531 + MPMX20_00163 0.28 -2.1
168,531 + MPMX20_00163 0.28 -0.1
168,539 - MPMX20_00163 0.28 -0.2
168,623 + MPMX20_00163 0.34 +0.7
168,741 - MPMX20_00163 0.42 -1.1
168,750 + MPMX20_00163 0.42 -2.5
168,750 + MPMX20_00163 0.42 +3.3
168,758 - MPMX20_00163 0.43 -0.8
168,758 - MPMX20_00163 0.43 +1.9
168,758 - MPMX20_00163 0.43 +0.1
168,761 + MPMX20_00163 0.43 -0.6
168,776 - MPMX20_00163 0.44 -1.2
168,854 - MPMX20_00163 0.49 +1.1
168,863 + MPMX20_00163 0.49 -0.7
168,965 + MPMX20_00163 0.56 -0.2
168,970 + MPMX20_00163 0.56 +0.1
168,997 + MPMX20_00163 0.58 -0.5
169,002 + MPMX20_00163 0.58 +2.7
169,011 - MPMX20_00163 0.59 -0.6
169,031 - MPMX20_00163 0.60 -1.3
169,058 - MPMX20_00163 0.62 +0.7
169,092 + MPMX20_00163 0.64 -1.3
169,092 + MPMX20_00163 0.64 +0.1
169,092 + MPMX20_00163 0.64 -0.1
169,092 + MPMX20_00163 0.64 -0.4
169,107 + MPMX20_00163 0.65 -0.7
169,115 - MPMX20_00163 0.66 -1.1

Or see this region's nucleotide sequence