Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00156

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00155 and MPMX20_00156 are separated by 224 nucleotidesMPMX20_00156 and MPMX20_00157 are separated by 3 nucleotidesMPMX20_00157 and MPMX20_00158 are separated by 4 nucleotides MPMX20_00155: MPMX20_00155 - 2,3-diketo-L-gulonate reductase, at 158,571 to 159,569 _00155 MPMX20_00156: MPMX20_00156 - DNA-binding transcriptional repressor YiaJ, at 159,794 to 160,612 _00156 MPMX20_00157: MPMX20_00157 - Iron-sulfur protein, at 160,616 to 161,071 _00157 MPMX20_00158: MPMX20_00158 - Valine--pyruvate aminotransferase, at 161,076 to 162,332 _00158 Position (kb) 159 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 158.855 kb on + strand, within MPMX20_00155at 158.855 kb on + strand, within MPMX20_00155at 158.855 kb on + strand, within MPMX20_00155at 158.855 kb on + strand, within MPMX20_00155at 158.858 kb on - strand, within MPMX20_00155at 158.880 kb on + strand, within MPMX20_00155at 158.880 kb on + strand, within MPMX20_00155at 158.886 kb on + strand, within MPMX20_00155at 158.886 kb on + strand, within MPMX20_00155at 158.888 kb on - strand, within MPMX20_00155at 158.888 kb on - strand, within MPMX20_00155at 158.888 kb on - strand, within MPMX20_00155at 158.888 kb on - strand, within MPMX20_00155at 158.893 kb on - strand, within MPMX20_00155at 158.961 kb on + strand, within MPMX20_00155at 158.998 kb on + strand, within MPMX20_00155at 159.091 kb on + strand, within MPMX20_00155at 159.099 kb on - strand, within MPMX20_00155at 159.106 kb on - strand, within MPMX20_00155at 159.106 kb on - strand, within MPMX20_00155at 159.111 kb on - strand, within MPMX20_00155at 159.155 kb on - strand, within MPMX20_00155at 159.346 kb on - strand, within MPMX20_00155at 159.415 kb on - strand, within MPMX20_00155at 159.428 kb on + strand, within MPMX20_00155at 159.428 kb on + strand, within MPMX20_00155at 159.428 kb on + strand, within MPMX20_00155at 159.428 kb on + strand, within MPMX20_00155at 159.428 kb on + strand, within MPMX20_00155at 159.434 kb on - strand, within MPMX20_00155at 159.436 kb on - strand, within MPMX20_00155at 159.436 kb on - strand, within MPMX20_00155at 159.445 kb on - strand, within MPMX20_00155at 159.455 kb on + strand, within MPMX20_00155at 159.486 kb on + strandat 159.494 kb on - strandat 159.524 kb on + strandat 159.528 kb on - strandat 159.528 kb on - strandat 159.796 kb on - strandat 159.864 kb on + strandat 159.955 kb on + strand, within MPMX20_00156at 159.972 kb on + strand, within MPMX20_00156at 159.972 kb on + strand, within MPMX20_00156at 159.972 kb on + strand, within MPMX20_00156at 159.972 kb on + strand, within MPMX20_00156at 159.972 kb on + strand, within MPMX20_00156at 159.972 kb on + strand, within MPMX20_00156at 159.972 kb on + strand, within MPMX20_00156at 159.980 kb on - strand, within MPMX20_00156at 159.980 kb on - strand, within MPMX20_00156at 159.980 kb on - strand, within MPMX20_00156at 159.993 kb on - strand, within MPMX20_00156at 159.995 kb on + strand, within MPMX20_00156at 160.017 kb on + strand, within MPMX20_00156at 160.025 kb on - strand, within MPMX20_00156at 160.066 kb on - strand, within MPMX20_00156at 160.092 kb on - strand, within MPMX20_00156at 160.100 kb on - strand, within MPMX20_00156at 160.107 kb on - strand, within MPMX20_00156at 160.119 kb on + strand, within MPMX20_00156at 160.130 kb on + strand, within MPMX20_00156at 160.165 kb on - strand, within MPMX20_00156at 160.186 kb on + strand, within MPMX20_00156at 160.194 kb on + strand, within MPMX20_00156at 160.194 kb on - strand, within MPMX20_00156at 160.194 kb on - strand, within MPMX20_00156at 160.231 kb on - strand, within MPMX20_00156at 160.245 kb on - strand, within MPMX20_00156at 160.279 kb on - strand, within MPMX20_00156at 160.293 kb on - strand, within MPMX20_00156at 160.314 kb on + strand, within MPMX20_00156at 160.362 kb on + strand, within MPMX20_00156at 160.407 kb on - strand, within MPMX20_00156at 160.407 kb on - strand, within MPMX20_00156at 160.446 kb on - strand, within MPMX20_00156at 160.466 kb on + strand, within MPMX20_00156at 160.543 kb on + strandat 160.590 kb on + strandat 160.590 kb on + strandat 160.598 kb on - strandat 160.598 kb on - strandat 160.598 kb on - strandat 160.665 kb on + strand, within MPMX20_00157at 160.688 kb on - strand, within MPMX20_00157at 160.736 kb on - strand, within MPMX20_00157at 160.756 kb on + strand, within MPMX20_00157at 160.763 kb on + strand, within MPMX20_00157at 160.771 kb on - strand, within MPMX20_00157at 160.823 kb on + strand, within MPMX20_00157at 160.975 kb on - strand, within MPMX20_00157at 160.987 kb on - strand, within MPMX20_00157at 160.989 kb on + strand, within MPMX20_00157at 160.989 kb on + strand, within MPMX20_00157at 160.989 kb on + strand, within MPMX20_00157at 160.989 kb on + strand, within MPMX20_00157at 160.989 kb on + strand, within MPMX20_00157at 160.997 kb on - strand, within MPMX20_00157at 160.997 kb on - strand, within MPMX20_00157at 161.020 kb on - strand, within MPMX20_00157at 161.030 kb on - strandat 161.030 kb on - strandat 161.030 kb on - strandat 161.030 kb on - strandat 161.092 kb on + strandat 161.171 kb on - strandat 161.191 kb on + strandat 161.202 kb on + strand, within MPMX20_00158at 161.210 kb on - strand, within MPMX20_00158at 161.210 kb on - strand, within MPMX20_00158at 161.220 kb on - strand, within MPMX20_00158at 161.411 kb on + strand, within MPMX20_00158at 161.449 kb on - strand, within MPMX20_00158at 161.492 kb on + strand, within MPMX20_00158at 161.500 kb on - strand, within MPMX20_00158at 161.594 kb on + strand, within MPMX20_00158at 161.594 kb on + strand, within MPMX20_00158at 161.595 kb on + strand, within MPMX20_00158

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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158,855 + MPMX20_00155 0.28 -1.2
158,855 + MPMX20_00155 0.28 +0.3
158,855 + MPMX20_00155 0.28 -0.8
158,855 + MPMX20_00155 0.28 +0.3
158,858 - MPMX20_00155 0.29 +0.8
158,880 + MPMX20_00155 0.31 -0.3
158,880 + MPMX20_00155 0.31 -1.9
158,886 + MPMX20_00155 0.32 -0.4
158,886 + MPMX20_00155 0.32 +1.4
158,888 - MPMX20_00155 0.32 -0.8
158,888 - MPMX20_00155 0.32 -1.7
158,888 - MPMX20_00155 0.32 +0.7
158,888 - MPMX20_00155 0.32 -0.9
158,893 - MPMX20_00155 0.32 +0.3
158,961 + MPMX20_00155 0.39 +0.1
158,998 + MPMX20_00155 0.43 +3.2
159,091 + MPMX20_00155 0.52 -0.1
159,099 - MPMX20_00155 0.53 -1.7
159,106 - MPMX20_00155 0.54 +0.7
159,106 - MPMX20_00155 0.54 +0.7
159,111 - MPMX20_00155 0.54 +0.6
159,155 - MPMX20_00155 0.58 +0.5
159,346 - MPMX20_00155 0.78 -0.9
159,415 - MPMX20_00155 0.84 -2.4
159,428 + MPMX20_00155 0.86 +0.2
159,428 + MPMX20_00155 0.86 +1.7
159,428 + MPMX20_00155 0.86 +2.7
159,428 + MPMX20_00155 0.86 -1.9
159,428 + MPMX20_00155 0.86 -2.0
159,434 - MPMX20_00155 0.86 -1.9
159,436 - MPMX20_00155 0.87 -1.6
159,436 - MPMX20_00155 0.87 -1.0
159,445 - MPMX20_00155 0.87 -0.7
159,455 + MPMX20_00155 0.88 +1.5
159,486 + -0.7
159,494 - -0.1
159,524 + +0.4
159,528 - -2.3
159,528 - +1.1
159,796 - +2.0
159,864 + -1.4
159,955 + MPMX20_00156 0.20 +0.7
159,972 + MPMX20_00156 0.22 +0.7
159,972 + MPMX20_00156 0.22 +0.3
159,972 + MPMX20_00156 0.22 -1.2
159,972 + MPMX20_00156 0.22 -2.3
159,972 + MPMX20_00156 0.22 -2.9
159,972 + MPMX20_00156 0.22 +1.7
159,972 + MPMX20_00156 0.22 -2.5
159,980 - MPMX20_00156 0.23 -1.7
159,980 - MPMX20_00156 0.23 -1.2
159,980 - MPMX20_00156 0.23 -0.7
159,993 - MPMX20_00156 0.24 -2.2
159,995 + MPMX20_00156 0.25 +1.7
160,017 + MPMX20_00156 0.27 -2.3
160,025 - MPMX20_00156 0.28 -1.1
160,066 - MPMX20_00156 0.33 -3.7
160,092 - MPMX20_00156 0.36 -1.1
160,100 - MPMX20_00156 0.37 +1.7
160,107 - MPMX20_00156 0.38 +0.7
160,119 + MPMX20_00156 0.40 -1.8
160,130 + MPMX20_00156 0.41 -3.4
160,165 - MPMX20_00156 0.45 -2.4
160,186 + MPMX20_00156 0.48 +0.1
160,194 + MPMX20_00156 0.49 -2.3
160,194 - MPMX20_00156 0.49 -3.0
160,194 - MPMX20_00156 0.49 -0.2
160,231 - MPMX20_00156 0.53 -1.9
160,245 - MPMX20_00156 0.55 +1.2
160,279 - MPMX20_00156 0.59 -3.1
160,293 - MPMX20_00156 0.61 -1.2
160,314 + MPMX20_00156 0.63 -1.7
160,362 + MPMX20_00156 0.69 -0.1
160,407 - MPMX20_00156 0.75 -2.3
160,407 - MPMX20_00156 0.75 -2.6
160,446 - MPMX20_00156 0.80 +0.9
160,466 + MPMX20_00156 0.82 +0.1
160,543 + -2.7
160,590 + -1.7
160,590 + -0.4
160,598 - -0.5
160,598 - -0.3
160,598 - -0.5
160,665 + MPMX20_00157 0.11 -2.3
160,688 - MPMX20_00157 0.16 +1.0
160,736 - MPMX20_00157 0.26 -1.0
160,756 + MPMX20_00157 0.31 -0.3
160,763 + MPMX20_00157 0.32 +0.5
160,771 - MPMX20_00157 0.34 -0.1
160,823 + MPMX20_00157 0.45 +1.5
160,975 - MPMX20_00157 0.79 -0.6
160,987 - MPMX20_00157 0.81 -1.9
160,989 + MPMX20_00157 0.82 -0.0
160,989 + MPMX20_00157 0.82 +0.4
160,989 + MPMX20_00157 0.82 +1.9
160,989 + MPMX20_00157 0.82 -0.1
160,989 + MPMX20_00157 0.82 -2.7
160,997 - MPMX20_00157 0.84 +1.1
160,997 - MPMX20_00157 0.84 -0.1
161,020 - MPMX20_00157 0.89 +0.1
161,030 - +2.0
161,030 - -0.8
161,030 - -2.8
161,030 - +1.5
161,092 + +1.3
161,171 - -0.7
161,191 + -0.6
161,202 + MPMX20_00158 0.10 -1.1
161,210 - MPMX20_00158 0.11 -0.8
161,210 - MPMX20_00158 0.11 -2.9
161,220 - MPMX20_00158 0.11 +0.8
161,411 + MPMX20_00158 0.27 +0.5
161,449 - MPMX20_00158 0.30 -0.9
161,492 + MPMX20_00158 0.33 +2.2
161,500 - MPMX20_00158 0.34 +1.8
161,594 + MPMX20_00158 0.41 -3.7
161,594 + MPMX20_00158 0.41 -0.8
161,595 + MPMX20_00158 0.41 -0.9

Or see this region's nucleotide sequence