Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00149 and MPMX20_00150 overlap by 19 nucleotides MPMX20_00150 and MPMX20_00151 overlap by 4 nucleotides MPMX20_00151 and MPMX20_00152 are separated by 48 nucleotides
MPMX20_00149: MPMX20_00149 - L-ribulose-5-phosphate 3-epimerase UlaE, at 152,709 to 153,569
_00149
MPMX20_00150: MPMX20_00150 - 3-keto-L-gulonate-6-phosphate decarboxylase SgbH, at 153,551 to 154,225
_00150
MPMX20_00151: MPMX20_00151 - L-xylulose/3-keto-L-gulonate kinase, at 154,222 to 155,727
_00151
MPMX20_00152: MPMX20_00152 - Putative tartrate transporter, at 155,776 to 157,095
_00152
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 153.223 kb on - strand, within MPMX20_00149 at 153.237 kb on + strand, within MPMX20_00149 at 153.425 kb on - strand, within MPMX20_00149 at 153.432 kb on + strand, within MPMX20_00149 at 153.452 kb on + strand, within MPMX20_00149 at 153.511 kb on + strand at 153.511 kb on + strand at 153.511 kb on + strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.519 kb on - strand at 153.636 kb on + strand, within MPMX20_00150 at 153.705 kb on - strand, within MPMX20_00150 at 153.730 kb on + strand, within MPMX20_00150 at 153.730 kb on + strand, within MPMX20_00150 at 153.753 kb on + strand, within MPMX20_00150 at 153.792 kb on + strand, within MPMX20_00150 at 153.800 kb on - strand, within MPMX20_00150 at 153.832 kb on + strand, within MPMX20_00150 at 153.838 kb on + strand, within MPMX20_00150 at 153.840 kb on - strand, within MPMX20_00150 at 153.840 kb on - strand, within MPMX20_00150 at 153.846 kb on - strand, within MPMX20_00150 at 153.909 kb on + strand, within MPMX20_00150 at 153.914 kb on + strand, within MPMX20_00150 at 153.922 kb on - strand, within MPMX20_00150 at 153.922 kb on - strand, within MPMX20_00150 at 153.953 kb on - strand, within MPMX20_00150 at 153.960 kb on + strand, within MPMX20_00150 at 153.980 kb on + strand, within MPMX20_00150 at 153.980 kb on + strand, within MPMX20_00150 at 153.988 kb on - strand, within MPMX20_00150 at 154.067 kb on + strand, within MPMX20_00150 at 154.089 kb on + strand, within MPMX20_00150 at 154.089 kb on + strand, within MPMX20_00150 at 154.089 kb on + strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.097 kb on - strand, within MPMX20_00150 at 154.125 kb on + strand, within MPMX20_00150 at 154.156 kb on + strand, within MPMX20_00150 at 154.180 kb on + strand at 154.183 kb on - strand at 154.228 kb on - strand at 154.255 kb on + strand at 154.255 kb on + strand at 154.255 kb on + strand at 154.260 kb on + strand at 154.263 kb on - strand at 154.310 kb on - strand at 154.333 kb on + strand at 154.394 kb on + strand, within MPMX20_00151 at 154.474 kb on - strand, within MPMX20_00151 at 154.519 kb on - strand, within MPMX20_00151 at 154.532 kb on + strand, within MPMX20_00151 at 154.570 kb on - strand, within MPMX20_00151 at 154.588 kb on + strand, within MPMX20_00151 at 154.596 kb on - strand, within MPMX20_00151 at 154.636 kb on + strand, within MPMX20_00151 at 154.673 kb on - strand, within MPMX20_00151 at 154.750 kb on - strand, within MPMX20_00151 at 154.773 kb on - strand, within MPMX20_00151 at 154.781 kb on + strand, within MPMX20_00151 at 154.789 kb on - strand, within MPMX20_00151 at 154.808 kb on - strand, within MPMX20_00151 at 154.809 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.832 kb on + strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.840 kb on - strand, within MPMX20_00151 at 154.853 kb on - strand, within MPMX20_00151 at 154.858 kb on + strand, within MPMX20_00151 at 154.871 kb on + strand, within MPMX20_00151 at 154.887 kb on + strand, within MPMX20_00151 at 154.887 kb on + strand, within MPMX20_00151 at 154.895 kb on - strand, within MPMX20_00151 at 154.924 kb on + strand, within MPMX20_00151 at 154.945 kb on - strand, within MPMX20_00151 at 154.959 kb on - strand, within MPMX20_00151 at 154.962 kb on + strand, within MPMX20_00151 at 155.011 kb on + strand, within MPMX20_00151 at 155.012 kb on + strand, within MPMX20_00151 at 155.012 kb on + strand, within MPMX20_00151 at 155.020 kb on - strand, within MPMX20_00151 at 155.068 kb on + strand, within MPMX20_00151 at 155.095 kb on - strand, within MPMX20_00151 at 155.156 kb on + strand, within MPMX20_00151 at 155.156 kb on + strand, within MPMX20_00151 at 155.167 kb on + strand, within MPMX20_00151 at 155.196 kb on + strand, within MPMX20_00151 at 155.196 kb on + strand, within MPMX20_00151 at 155.204 kb on - strand, within MPMX20_00151 at 155.204 kb on - strand, within MPMX20_00151 at 155.205 kb on + strand, within MPMX20_00151 at 155.228 kb on - strand, within MPMX20_00151 at 155.265 kb on + strand, within MPMX20_00151 at 155.280 kb on + strand, within MPMX20_00151 at 155.289 kb on + strand, within MPMX20_00151 at 155.289 kb on + strand, within MPMX20_00151 at 155.289 kb on + strand, within MPMX20_00151 at 155.297 kb on - strand, within MPMX20_00151 at 155.297 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.307 kb on - strand, within MPMX20_00151 at 155.332 kb on + strand, within MPMX20_00151 at 155.332 kb on - strand, within MPMX20_00151 at 155.378 kb on + strand, within MPMX20_00151 at 155.383 kb on + strand, within MPMX20_00151 at 155.386 kb on - strand, within MPMX20_00151 at 155.388 kb on + strand, within MPMX20_00151 at 155.396 kb on - strand, within MPMX20_00151 at 155.396 kb on - strand, within MPMX20_00151 at 155.409 kb on + strand, within MPMX20_00151 at 155.442 kb on + strand, within MPMX20_00151 at 155.468 kb on + strand, within MPMX20_00151 at 155.476 kb on - strand, within MPMX20_00151 at 155.495 kb on + strand, within MPMX20_00151 at 155.503 kb on - strand, within MPMX20_00151 at 155.549 kb on + strand, within MPMX20_00151 at 155.557 kb on - strand, within MPMX20_00151 at 155.593 kb on + strand at 155.598 kb on + strand at 155.626 kb on - strand at 155.642 kb on + strand at 155.656 kb on + strand at 155.659 kb on + strand at 155.664 kb on - strand at 155.664 kb on - strand at 155.711 kb on - strand at 155.736 kb on + strand at 155.736 kb on + strand at 155.749 kb on - strand at 155.753 kb on + strand at 155.755 kb on + strand at 155.755 kb on + strand at 155.760 kb on + strand at 155.763 kb on - strand at 155.768 kb on - strand at 155.779 kb on + strand at 155.781 kb on + strand at 155.815 kb on - strand at 155.815 kb on - strand at 155.887 kb on + strand at 155.888 kb on + strand at 155.919 kb on - strand, within MPMX20_00152 at 155.962 kb on - strand, within MPMX20_00152 at 155.968 kb on - strand, within MPMX20_00152 at 155.968 kb on - strand, within MPMX20_00152 at 155.973 kb on - strand, within MPMX20_00152 at 155.980 kb on - strand, within MPMX20_00152 at 155.998 kb on + strand, within MPMX20_00152 at 156.011 kb on - strand, within MPMX20_00152 at 156.013 kb on + strand, within MPMX20_00152 at 156.016 kb on - strand, within MPMX20_00152 at 156.040 kb on - strand, within MPMX20_00152 at 156.045 kb on - strand, within MPMX20_00152 at 156.045 kb on - strand, within MPMX20_00152 at 156.094 kb on - strand, within MPMX20_00152 at 156.122 kb on + strand, within MPMX20_00152 at 156.136 kb on - strand, within MPMX20_00152 at 156.163 kb on + strand, within MPMX20_00152 at 156.164 kb on - strand, within MPMX20_00152 at 156.169 kb on - strand, within MPMX20_00152 at 156.264 kb on + strand, within MPMX20_00152 at 156.288 kb on + strand, within MPMX20_00152 at 156.306 kb on - strand, within MPMX20_00152 at 156.313 kb on - strand, within MPMX20_00152 at 156.314 kb on - strand, within MPMX20_00152 at 156.328 kb on - strand, within MPMX20_00152 at 156.336 kb on + strand, within MPMX20_00152 at 156.346 kb on + strand, within MPMX20_00152 at 156.354 kb on - strand, within MPMX20_00152 at 156.384 kb on + strand, within MPMX20_00152 at 156.384 kb on + strand, within MPMX20_00152 at 156.392 kb on - strand, within MPMX20_00152 at 156.392 kb on - strand, within MPMX20_00152 at 156.397 kb on - strand, within MPMX20_00152 at 156.435 kb on + strand, within MPMX20_00152 at 156.435 kb on + strand, within MPMX20_00152 at 156.443 kb on - strand, within MPMX20_00152 at 156.514 kb on + strand, within MPMX20_00152 at 156.604 kb on + strand, within MPMX20_00152 at 156.604 kb on + strand, within MPMX20_00152 at 156.610 kb on + strand, within MPMX20_00152 at 156.636 kb on + strand, within MPMX20_00152 at 156.719 kb on - strand, within MPMX20_00152
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5 remove 153,223 - MPMX20_00149 0.60 -2.7 153,237 + MPMX20_00149 0.61 +2.3 153,425 - MPMX20_00149 0.83 +0.2 153,432 + MPMX20_00149 0.84 +1.7 153,452 + MPMX20_00149 0.86 -1.6 153,511 + +1.3 153,511 + -0.8 153,511 + +1.2 153,519 - +2.4 153,519 - -1.1 153,519 - -0.9 153,519 - +3.8 153,519 - +1.1 153,519 - -0.1 153,519 - -0.2 153,519 - +0.3 153,636 + MPMX20_00150 0.13 +0.5 153,705 - MPMX20_00150 0.23 -0.8 153,730 + MPMX20_00150 0.27 +0.9 153,730 + MPMX20_00150 0.27 +0.1 153,753 + MPMX20_00150 0.30 +1.7 153,792 + MPMX20_00150 0.36 +0.7 153,800 - MPMX20_00150 0.37 -0.3 153,832 + MPMX20_00150 0.42 +2.7 153,838 + MPMX20_00150 0.43 +1.9 153,840 - MPMX20_00150 0.43 -0.1 153,840 - MPMX20_00150 0.43 +0.1 153,846 - MPMX20_00150 0.44 -1.0 153,909 + MPMX20_00150 0.53 +1.8 153,914 + MPMX20_00150 0.54 +1.1 153,922 - MPMX20_00150 0.55 +0.3 153,922 - MPMX20_00150 0.55 -1.5 153,953 - MPMX20_00150 0.60 +1.5 153,960 + MPMX20_00150 0.61 +0.7 153,980 + MPMX20_00150 0.64 -1.5 153,980 + MPMX20_00150 0.64 +0.7 153,988 - MPMX20_00150 0.65 -0.6 154,067 + MPMX20_00150 0.76 +0.9 154,089 + MPMX20_00150 0.80 -1.2 154,089 + MPMX20_00150 0.80 +0.7 154,089 + MPMX20_00150 0.80 -1.3 154,097 - MPMX20_00150 0.81 -0.6 154,097 - MPMX20_00150 0.81 -1.7 154,097 - MPMX20_00150 0.81 +0.1 154,097 - MPMX20_00150 0.81 +0.7 154,125 + MPMX20_00150 0.85 -0.1 154,156 + MPMX20_00150 0.90 -1.8 154,180 + -2.0 154,183 - -0.2 154,228 - +1.6 154,255 + +0.4 154,255 + +1.3 154,255 + -0.7 154,260 + -0.1 154,263 - +2.1 154,310 - -2.0 154,333 + +1.1 154,394 + MPMX20_00151 0.11 +0.7 154,474 - MPMX20_00151 0.17 +1.8 154,519 - MPMX20_00151 0.20 -0.5 154,532 + MPMX20_00151 0.21 +0.1 154,570 - MPMX20_00151 0.23 +0.3 154,588 + MPMX20_00151 0.24 +1.7 154,596 - MPMX20_00151 0.25 +1.8 154,636 + MPMX20_00151 0.27 -0.3 154,673 - MPMX20_00151 0.30 -1.4 154,750 - MPMX20_00151 0.35 -0.2 154,773 - MPMX20_00151 0.37 -0.6 154,781 + MPMX20_00151 0.37 -0.8 154,789 - MPMX20_00151 0.38 -0.1 154,808 - MPMX20_00151 0.39 -0.9 154,809 + MPMX20_00151 0.39 +0.1 154,832 + MPMX20_00151 0.41 +0.0 154,832 + MPMX20_00151 0.41 +0.2 154,832 + MPMX20_00151 0.41 +0.9 154,832 + MPMX20_00151 0.41 +2.3 154,840 - MPMX20_00151 0.41 -0.6 154,840 - MPMX20_00151 0.41 -2.4 154,840 - MPMX20_00151 0.41 +0.5 154,840 - MPMX20_00151 0.41 -0.3 154,840 - MPMX20_00151 0.41 +1.1 154,853 - MPMX20_00151 0.42 +0.6 154,858 + MPMX20_00151 0.42 +0.1 154,871 + MPMX20_00151 0.43 +0.7 154,887 + MPMX20_00151 0.44 +1.1 154,887 + MPMX20_00151 0.44 -2.3 154,895 - MPMX20_00151 0.45 +0.5 154,924 + MPMX20_00151 0.47 +0.4 154,945 - MPMX20_00151 0.48 +0.4 154,959 - MPMX20_00151 0.49 -0.4 154,962 + MPMX20_00151 0.49 +1.1 155,011 + MPMX20_00151 0.52 +2.0 155,012 + MPMX20_00151 0.52 -0.5 155,012 + MPMX20_00151 0.52 +0.2 155,020 - MPMX20_00151 0.53 +1.0 155,068 + MPMX20_00151 0.56 +3.9 155,095 - MPMX20_00151 0.58 +0.8 155,156 + MPMX20_00151 0.62 -1.3 155,156 + MPMX20_00151 0.62 +0.7 155,167 + MPMX20_00151 0.63 -1.1 155,196 + MPMX20_00151 0.65 -2.4 155,196 + MPMX20_00151 0.65 +0.8 155,204 - MPMX20_00151 0.65 -0.5 155,204 - MPMX20_00151 0.65 -0.6 155,205 + MPMX20_00151 0.65 -0.3 155,228 - MPMX20_00151 0.67 +1.7 155,265 + MPMX20_00151 0.69 -1.9 155,280 + MPMX20_00151 0.70 -0.1 155,289 + MPMX20_00151 0.71 +0.1 155,289 + MPMX20_00151 0.71 +0.7 155,289 + MPMX20_00151 0.71 -2.7 155,297 - MPMX20_00151 0.71 -0.1 155,297 - MPMX20_00151 0.71 -1.5 155,307 - MPMX20_00151 0.72 +0.1 155,307 - MPMX20_00151 0.72 +1.0 155,307 - MPMX20_00151 0.72 -0.3 155,307 - MPMX20_00151 0.72 +0.9 155,307 - MPMX20_00151 0.72 +1.7 155,332 + MPMX20_00151 0.74 -0.1 155,332 - MPMX20_00151 0.74 -1.1 155,378 + MPMX20_00151 0.77 -2.6 155,383 + MPMX20_00151 0.77 -2.1 155,386 - MPMX20_00151 0.77 -1.5 155,388 + MPMX20_00151 0.77 +1.9 155,396 - MPMX20_00151 0.78 -0.0 155,396 - MPMX20_00151 0.78 -1.3 155,409 + MPMX20_00151 0.79 +0.4 155,442 + MPMX20_00151 0.81 -1.6 155,468 + MPMX20_00151 0.83 +2.7 155,476 - MPMX20_00151 0.83 -0.9 155,495 + MPMX20_00151 0.85 -2.9 155,503 - MPMX20_00151 0.85 -1.9 155,549 + MPMX20_00151 0.88 -0.1 155,557 - MPMX20_00151 0.89 -0.4 155,593 + +0.7 155,598 + -0.6 155,626 - +0.4 155,642 + -1.6 155,656 + -1.1 155,659 + -0.5 155,664 - -3.3 155,664 - -1.7 155,711 - -1.0 155,736 + -1.0 155,736 + -3.0 155,749 - -1.1 155,753 + -2.0 155,755 + -3.6 155,755 + +0.5 155,760 + +0.2 155,763 - -1.1 155,768 - +0.4 155,779 + -1.4 155,781 + +1.1 155,815 - -1.6 155,815 - -1.4 155,887 + -3.0 155,888 + +2.7 155,919 - MPMX20_00152 0.11 +0.2 155,962 - MPMX20_00152 0.14 -2.8 155,968 - MPMX20_00152 0.15 -2.6 155,968 - MPMX20_00152 0.15 -0.5 155,973 - MPMX20_00152 0.15 -2.4 155,980 - MPMX20_00152 0.15 +2.5 155,998 + MPMX20_00152 0.17 -1.0 156,011 - MPMX20_00152 0.18 -1.1 156,013 + MPMX20_00152 0.18 +2.4 156,016 - MPMX20_00152 0.18 +0.6 156,040 - MPMX20_00152 0.20 -0.3 156,045 - MPMX20_00152 0.20 +2.8 156,045 - MPMX20_00152 0.20 -3.0 156,094 - MPMX20_00152 0.24 -0.6 156,122 + MPMX20_00152 0.26 -0.3 156,136 - MPMX20_00152 0.27 -1.5 156,163 + MPMX20_00152 0.29 -0.6 156,164 - MPMX20_00152 0.29 +0.6 156,169 - MPMX20_00152 0.30 +0.4 156,264 + MPMX20_00152 0.37 -0.8 156,288 + MPMX20_00152 0.39 -0.2 156,306 - MPMX20_00152 0.40 -1.0 156,313 - MPMX20_00152 0.41 -0.5 156,314 - MPMX20_00152 0.41 +1.7 156,328 - MPMX20_00152 0.42 -2.8 156,336 + MPMX20_00152 0.42 +0.1 156,346 + MPMX20_00152 0.43 -1.6 156,354 - MPMX20_00152 0.44 -0.6 156,384 + MPMX20_00152 0.46 +0.5 156,384 + MPMX20_00152 0.46 -3.0 156,392 - MPMX20_00152 0.47 +1.7 156,392 - MPMX20_00152 0.47 -3.3 156,397 - MPMX20_00152 0.47 -0.8 156,435 + MPMX20_00152 0.50 +1.7 156,435 + MPMX20_00152 0.50 +0.3 156,443 - MPMX20_00152 0.51 +0.5 156,514 + MPMX20_00152 0.56 -0.7 156,604 + MPMX20_00152 0.63 +2.4 156,604 + MPMX20_00152 0.63 +0.6 156,610 + MPMX20_00152 0.63 +0.5 156,636 + MPMX20_00152 0.65 +1.7 156,719 - MPMX20_00152 0.71 +1.4
Or see this region's nucleotide sequence