Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00003

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00002 and MPMX20_00003 are separated by 147 nucleotidesMPMX20_00003 and MPMX20_00004 are separated by 28 nucleotides MPMX20_00002: MPMX20_00002 - Beta sliding clamp, at 1,403 to 2,503 _00002 MPMX20_00003: MPMX20_00003 - DNA replication and repair protein RecF, at 2,651 to 3,724 _00003 MPMX20_00004: MPMX20_00004 - DNA gyrase subunit B, at 3,753 to 6,164 _00004 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.508 kb on - strandat 2.508 kb on - strandat 2.510 kb on + strandat 2.533 kb on + strandat 2.568 kb on - strandat 2.775 kb on - strand, within MPMX20_00003at 2.813 kb on + strand, within MPMX20_00003at 2.850 kb on + strand, within MPMX20_00003at 2.850 kb on + strand, within MPMX20_00003at 2.858 kb on - strand, within MPMX20_00003at 2.873 kb on - strand, within MPMX20_00003at 2.905 kb on + strand, within MPMX20_00003at 2.913 kb on - strand, within MPMX20_00003at 2.936 kb on + strand, within MPMX20_00003at 2.980 kb on + strand, within MPMX20_00003at 2.988 kb on - strand, within MPMX20_00003at 2.988 kb on - strand, within MPMX20_00003at 3.012 kb on + strand, within MPMX20_00003at 3.020 kb on - strand, within MPMX20_00003at 3.097 kb on + strand, within MPMX20_00003at 3.098 kb on + strand, within MPMX20_00003at 3.098 kb on + strand, within MPMX20_00003at 3.105 kb on - strand, within MPMX20_00003at 3.111 kb on - strand, within MPMX20_00003at 3.128 kb on - strand, within MPMX20_00003at 3.130 kb on + strand, within MPMX20_00003at 3.135 kb on + strand, within MPMX20_00003at 3.138 kb on - strand, within MPMX20_00003at 3.138 kb on - strand, within MPMX20_00003at 3.138 kb on - strand, within MPMX20_00003at 3.138 kb on - strand, within MPMX20_00003at 3.143 kb on - strand, within MPMX20_00003at 3.143 kb on - strand, within MPMX20_00003at 3.145 kb on + strand, within MPMX20_00003at 3.160 kb on - strand, within MPMX20_00003at 3.164 kb on + strand, within MPMX20_00003at 3.164 kb on + strand, within MPMX20_00003at 3.227 kb on + strand, within MPMX20_00003at 3.260 kb on + strand, within MPMX20_00003at 3.275 kb on - strand, within MPMX20_00003at 3.277 kb on + strand, within MPMX20_00003at 3.277 kb on + strand, within MPMX20_00003at 3.285 kb on - strand, within MPMX20_00003at 3.298 kb on + strand, within MPMX20_00003at 3.395 kb on - strand, within MPMX20_00003at 3.459 kb on + strand, within MPMX20_00003at 3.476 kb on + strand, within MPMX20_00003at 3.477 kb on - strand, within MPMX20_00003at 3.484 kb on - strand, within MPMX20_00003at 3.548 kb on - strand, within MPMX20_00003at 3.643 kb on + strandat 3.658 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4; CocultureWith=Inquilinus sp. 005-A5
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2,508 - +1.6
2,508 - +0.7
2,510 + +1.9
2,533 + -1.0
2,568 - +1.1
2,775 - MPMX20_00003 0.12 -1.1
2,813 + MPMX20_00003 0.15 -1.8
2,850 + MPMX20_00003 0.19 +0.1
2,850 + MPMX20_00003 0.19 -2.0
2,858 - MPMX20_00003 0.19 -2.5
2,873 - MPMX20_00003 0.21 -2.5
2,905 + MPMX20_00003 0.24 -2.0
2,913 - MPMX20_00003 0.24 -0.4
2,936 + MPMX20_00003 0.27 -0.9
2,980 + MPMX20_00003 0.31 +0.1
2,988 - MPMX20_00003 0.31 -0.7
2,988 - MPMX20_00003 0.31 -1.7
3,012 + MPMX20_00003 0.34 -2.0
3,020 - MPMX20_00003 0.34 -1.7
3,097 + MPMX20_00003 0.42 -3.1
3,098 + MPMX20_00003 0.42 -0.6
3,098 + MPMX20_00003 0.42 -1.3
3,105 - MPMX20_00003 0.42 +0.7
3,111 - MPMX20_00003 0.43 -2.4
3,128 - MPMX20_00003 0.44 +1.7
3,130 + MPMX20_00003 0.45 +0.7
3,135 + MPMX20_00003 0.45 +1.1
3,138 - MPMX20_00003 0.45 +0.7
3,138 - MPMX20_00003 0.45 -0.3
3,138 - MPMX20_00003 0.45 -1.1
3,138 - MPMX20_00003 0.45 -2.1
3,143 - MPMX20_00003 0.46 +0.9
3,143 - MPMX20_00003 0.46 -1.0
3,145 + MPMX20_00003 0.46 +0.1
3,160 - MPMX20_00003 0.47 -1.4
3,164 + MPMX20_00003 0.48 -1.0
3,164 + MPMX20_00003 0.48 -2.7
3,227 + MPMX20_00003 0.54 -0.3
3,260 + MPMX20_00003 0.57 -2.1
3,275 - MPMX20_00003 0.58 +0.7
3,277 + MPMX20_00003 0.58 +0.7
3,277 + MPMX20_00003 0.58 -1.7
3,285 - MPMX20_00003 0.59 -0.6
3,298 + MPMX20_00003 0.60 -1.1
3,395 - MPMX20_00003 0.69 -2.7
3,459 + MPMX20_00003 0.75 -3.4
3,476 + MPMX20_00003 0.77 -0.1
3,477 - MPMX20_00003 0.77 -2.3
3,484 - MPMX20_00003 0.78 -2.8
3,548 - MPMX20_00003 0.84 -2.8
3,643 + -2.1
3,658 + -0.3

Or see this region's nucleotide sequence