Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04433

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04431 and MPMX20_04432 are separated by 356 nucleotidesMPMX20_04432 and MPMX20_04433 are separated by 10 nucleotidesMPMX20_04433 and MPMX20_04434 are separated by 41 nucleotidesMPMX20_04434 and MPMX20_04435 overlap by 1 nucleotides MPMX20_04431: MPMX20_04431 - 16S ribosomal RNA, at 4,631,903 to 4,633,438 _04431 MPMX20_04432: MPMX20_04432 - Protoporphyrinogen IX dehydrogenase [menaquinone], at 4,633,795 to 4,634,340 _04432 MPMX20_04433: MPMX20_04433 - Trk system potassium uptake protein TrkH, at 4,634,351 to 4,635,802 _04433 MPMX20_04434: MPMX20_04434 - IMPACT family member YigZ, at 4,635,844 to 4,636,458 _04434 MPMX20_04435: MPMX20_04435 - Xaa-Pro dipeptidase, at 4,636,458 to 4,637,789 _04435 Position (kb) 4634 4635 4636Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4634.347 kb on + strandat 4634.347 kb on + strandat 4634.365 kb on + strandat 4634.365 kb on + strandat 4634.378 kb on - strandat 4634.389 kb on + strandat 4634.396 kb on + strandat 4634.480 kb on + strandat 4634.480 kb on + strandat 4634.480 kb on + strandat 4634.485 kb on + strandat 4634.485 kb on + strandat 4634.493 kb on - strandat 4634.606 kb on + strand, within MPMX20_04433at 4634.606 kb on + strand, within MPMX20_04433at 4634.643 kb on + strand, within MPMX20_04433at 4634.651 kb on - strand, within MPMX20_04433at 4634.653 kb on + strand, within MPMX20_04433at 4634.681 kb on + strand, within MPMX20_04433at 4634.695 kb on + strand, within MPMX20_04433at 4634.710 kb on + strand, within MPMX20_04433at 4634.725 kb on + strand, within MPMX20_04433at 4634.779 kb on + strand, within MPMX20_04433at 4634.787 kb on - strand, within MPMX20_04433at 4634.787 kb on - strand, within MPMX20_04433at 4634.821 kb on + strand, within MPMX20_04433at 4634.834 kb on - strand, within MPMX20_04433at 4634.876 kb on - strand, within MPMX20_04433at 4634.904 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.906 kb on + strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.914 kb on - strand, within MPMX20_04433at 4634.932 kb on + strand, within MPMX20_04433at 4634.940 kb on - strand, within MPMX20_04433at 4634.950 kb on - strand, within MPMX20_04433at 4634.961 kb on - strand, within MPMX20_04433at 4634.975 kb on - strand, within MPMX20_04433at 4635.004 kb on + strand, within MPMX20_04433at 4635.004 kb on + strand, within MPMX20_04433at 4635.010 kb on + strand, within MPMX20_04433at 4635.038 kb on - strand, within MPMX20_04433at 4635.093 kb on - strand, within MPMX20_04433at 4635.154 kb on + strand, within MPMX20_04433at 4635.164 kb on + strand, within MPMX20_04433at 4635.166 kb on + strand, within MPMX20_04433at 4635.208 kb on - strand, within MPMX20_04433at 4635.252 kb on - strand, within MPMX20_04433at 4635.260 kb on - strand, within MPMX20_04433at 4635.346 kb on + strand, within MPMX20_04433at 4635.364 kb on + strand, within MPMX20_04433at 4635.395 kb on - strand, within MPMX20_04433at 4635.396 kb on - strand, within MPMX20_04433at 4635.444 kb on + strand, within MPMX20_04433at 4635.480 kb on + strand, within MPMX20_04433at 4635.480 kb on + strand, within MPMX20_04433at 4635.526 kb on + strand, within MPMX20_04433at 4635.550 kb on + strand, within MPMX20_04433at 4635.550 kb on + strand, within MPMX20_04433at 4635.558 kb on + strand, within MPMX20_04433at 4635.558 kb on + strand, within MPMX20_04433at 4635.558 kb on + strand, within MPMX20_04433at 4635.558 kb on - strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.560 kb on + strand, within MPMX20_04433at 4635.566 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.568 kb on - strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.570 kb on + strand, within MPMX20_04433at 4635.573 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.578 kb on - strand, within MPMX20_04433at 4635.592 kb on + strand, within MPMX20_04433at 4635.641 kb on + strand, within MPMX20_04433at 4635.641 kb on + strand, within MPMX20_04433at 4635.646 kb on + strand, within MPMX20_04433at 4635.654 kb on - strand, within MPMX20_04433at 4635.654 kb on - strand, within MPMX20_04433at 4635.682 kb on + strandat 4635.682 kb on + strandat 4635.727 kb on + strandat 4635.845 kb on - strandat 4635.980 kb on + strand, within MPMX20_04434at 4635.980 kb on + strand, within MPMX20_04434at 4635.988 kb on - strand, within MPMX20_04434at 4635.988 kb on - strand, within MPMX20_04434at 4635.988 kb on - strand, within MPMX20_04434at 4636.041 kb on - strand, within MPMX20_04434at 4636.075 kb on - strand, within MPMX20_04434at 4636.113 kb on - strand, within MPMX20_04434at 4636.120 kb on - strand, within MPMX20_04434at 4636.120 kb on - strand, within MPMX20_04434at 4636.120 kb on - strand, within MPMX20_04434at 4636.174 kb on + strand, within MPMX20_04434at 4636.263 kb on + strand, within MPMX20_04434at 4636.263 kb on + strand, within MPMX20_04434at 4636.303 kb on + strand, within MPMX20_04434at 4636.359 kb on + strand, within MPMX20_04434at 4636.373 kb on + strand, within MPMX20_04434at 4636.402 kb on - strandat 4636.416 kb on + strandat 4636.466 kb on + strandat 4636.466 kb on + strandat 4636.569 kb on + strandat 4636.569 kb on + strandat 4636.575 kb on - strandat 4636.626 kb on + strand, within MPMX20_04435at 4636.644 kb on + strand, within MPMX20_04435at 4636.649 kb on + strand, within MPMX20_04435at 4636.661 kb on + strand, within MPMX20_04435at 4636.693 kb on - strand, within MPMX20_04435at 4636.712 kb on + strand, within MPMX20_04435at 4636.723 kb on + strand, within MPMX20_04435at 4636.731 kb on - strand, within MPMX20_04435at 4636.765 kb on - strand, within MPMX20_04435

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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4,634,347 + -0.8
4,634,347 + -2.5
4,634,365 + -0.0
4,634,365 + +0.4
4,634,378 - +0.1
4,634,389 + +0.1
4,634,396 + -2.9
4,634,480 + -2.3
4,634,480 + -0.3
4,634,480 + -3.2
4,634,485 + -1.5
4,634,485 + -0.5
4,634,493 - -1.5
4,634,606 + MPMX20_04433 0.18 +0.4
4,634,606 + MPMX20_04433 0.18 +0.3
4,634,643 + MPMX20_04433 0.20 -0.5
4,634,651 - MPMX20_04433 0.21 -1.7
4,634,653 + MPMX20_04433 0.21 +0.5
4,634,681 + MPMX20_04433 0.23 -1.2
4,634,695 + MPMX20_04433 0.24 -0.8
4,634,710 + MPMX20_04433 0.25 -0.0
4,634,725 + MPMX20_04433 0.26 -1.9
4,634,779 + MPMX20_04433 0.29 -0.6
4,634,787 - MPMX20_04433 0.30 -0.0
4,634,787 - MPMX20_04433 0.30 -2.1
4,634,821 + MPMX20_04433 0.32 -1.5
4,634,834 - MPMX20_04433 0.33 -0.8
4,634,876 - MPMX20_04433 0.36 +1.2
4,634,904 + MPMX20_04433 0.38 +1.0
4,634,906 + MPMX20_04433 0.38 -2.2
4,634,906 + MPMX20_04433 0.38 +1.5
4,634,906 + MPMX20_04433 0.38 +1.6
4,634,906 + MPMX20_04433 0.38 -1.5
4,634,906 + MPMX20_04433 0.38 -2.0
4,634,906 + MPMX20_04433 0.38 -1.0
4,634,906 + MPMX20_04433 0.38 -2.3
4,634,906 + MPMX20_04433 0.38 -0.4
4,634,914 - MPMX20_04433 0.39 +0.4
4,634,914 - MPMX20_04433 0.39 -1.8
4,634,914 - MPMX20_04433 0.39 -2.3
4,634,914 - MPMX20_04433 0.39 -2.1
4,634,914 - MPMX20_04433 0.39 -2.7
4,634,914 - MPMX20_04433 0.39 -1.1
4,634,914 - MPMX20_04433 0.39 +3.0
4,634,914 - MPMX20_04433 0.39 +2.0
4,634,932 + MPMX20_04433 0.40 -2.5
4,634,940 - MPMX20_04433 0.41 +2.4
4,634,950 - MPMX20_04433 0.41 -2.2
4,634,961 - MPMX20_04433 0.42 -2.7
4,634,975 - MPMX20_04433 0.43 -0.8
4,635,004 + MPMX20_04433 0.45 -1.3
4,635,004 + MPMX20_04433 0.45 -3.2
4,635,010 + MPMX20_04433 0.45 -2.7
4,635,038 - MPMX20_04433 0.47 -0.6
4,635,093 - MPMX20_04433 0.51 -2.0
4,635,154 + MPMX20_04433 0.55 -2.3
4,635,164 + MPMX20_04433 0.56 -0.6
4,635,166 + MPMX20_04433 0.56 -0.6
4,635,208 - MPMX20_04433 0.59 +1.2
4,635,252 - MPMX20_04433 0.62 -2.4
4,635,260 - MPMX20_04433 0.63 -2.2
4,635,346 + MPMX20_04433 0.69 -0.3
4,635,364 + MPMX20_04433 0.70 -2.0
4,635,395 - MPMX20_04433 0.72 -1.3
4,635,396 - MPMX20_04433 0.72 +1.4
4,635,444 + MPMX20_04433 0.75 -0.5
4,635,480 + MPMX20_04433 0.78 -0.6
4,635,480 + MPMX20_04433 0.78 -0.0
4,635,526 + MPMX20_04433 0.81 -0.6
4,635,550 + MPMX20_04433 0.83 -1.0
4,635,550 + MPMX20_04433 0.83 -2.7
4,635,558 + MPMX20_04433 0.83 -1.8
4,635,558 + MPMX20_04433 0.83 -2.2
4,635,558 + MPMX20_04433 0.83 -0.8
4,635,558 - MPMX20_04433 0.83 -0.6
4,635,560 + MPMX20_04433 0.83 +1.2
4,635,560 + MPMX20_04433 0.83 +0.7
4,635,560 + MPMX20_04433 0.83 +0.4
4,635,560 + MPMX20_04433 0.83 -1.6
4,635,560 + MPMX20_04433 0.83 -2.5
4,635,560 + MPMX20_04433 0.83 +0.8
4,635,560 + MPMX20_04433 0.83 -1.2
4,635,560 + MPMX20_04433 0.83 -0.8
4,635,560 + MPMX20_04433 0.83 -0.0
4,635,560 + MPMX20_04433 0.83 -1.9
4,635,560 + MPMX20_04433 0.83 -1.1
4,635,560 + MPMX20_04433 0.83 -0.8
4,635,560 + MPMX20_04433 0.83 -3.0
4,635,560 + MPMX20_04433 0.83 -0.6
4,635,566 - MPMX20_04433 0.84 -0.8
4,635,568 - MPMX20_04433 0.84 -0.5
4,635,568 - MPMX20_04433 0.84 -0.6
4,635,568 - MPMX20_04433 0.84 -0.0
4,635,568 - MPMX20_04433 0.84 -2.8
4,635,568 - MPMX20_04433 0.84 -0.1
4,635,568 - MPMX20_04433 0.84 -0.2
4,635,568 - MPMX20_04433 0.84 -2.0
4,635,568 - MPMX20_04433 0.84 +1.0
4,635,568 - MPMX20_04433 0.84 -2.2
4,635,568 - MPMX20_04433 0.84 -1.0
4,635,568 - MPMX20_04433 0.84 -2.8
4,635,568 - MPMX20_04433 0.84 +1.0
4,635,568 - MPMX20_04433 0.84 -1.1
4,635,570 + MPMX20_04433 0.84 -2.3
4,635,570 + MPMX20_04433 0.84 +1.2
4,635,570 + MPMX20_04433 0.84 +1.1
4,635,570 + MPMX20_04433 0.84 -1.0
4,635,570 + MPMX20_04433 0.84 -1.0
4,635,570 + MPMX20_04433 0.84 +1.3
4,635,570 + MPMX20_04433 0.84 +0.4
4,635,570 + MPMX20_04433 0.84 -1.0
4,635,570 + MPMX20_04433 0.84 -1.1
4,635,573 - MPMX20_04433 0.84 +2.0
4,635,578 - MPMX20_04433 0.85 +0.4
4,635,578 - MPMX20_04433 0.85 +0.0
4,635,578 - MPMX20_04433 0.85 -3.8
4,635,578 - MPMX20_04433 0.85 -2.8
4,635,578 - MPMX20_04433 0.85 -2.1
4,635,578 - MPMX20_04433 0.85 +2.0
4,635,578 - MPMX20_04433 0.85 -1.9
4,635,578 - MPMX20_04433 0.85 -1.3
4,635,592 + MPMX20_04433 0.85 -1.3
4,635,641 + MPMX20_04433 0.89 -2.0
4,635,641 + MPMX20_04433 0.89 +1.0
4,635,646 + MPMX20_04433 0.89 -2.8
4,635,654 - MPMX20_04433 0.90 -0.5
4,635,654 - MPMX20_04433 0.90 +0.1
4,635,682 + -1.8
4,635,682 + -2.7
4,635,727 + +0.4
4,635,845 - -0.5
4,635,980 + MPMX20_04434 0.22 -0.5
4,635,980 + MPMX20_04434 0.22 +0.5
4,635,988 - MPMX20_04434 0.23 -1.0
4,635,988 - MPMX20_04434 0.23 +0.4
4,635,988 - MPMX20_04434 0.23 -1.0
4,636,041 - MPMX20_04434 0.32 +0.1
4,636,075 - MPMX20_04434 0.38 +1.2
4,636,113 - MPMX20_04434 0.44 +0.1
4,636,120 - MPMX20_04434 0.45 +0.3
4,636,120 - MPMX20_04434 0.45 +1.3
4,636,120 - MPMX20_04434 0.45 +1.2
4,636,174 + MPMX20_04434 0.54 +0.2
4,636,263 + MPMX20_04434 0.68 -0.0
4,636,263 + MPMX20_04434 0.68 -2.9
4,636,303 + MPMX20_04434 0.75 +1.3
4,636,359 + MPMX20_04434 0.84 -0.6
4,636,373 + MPMX20_04434 0.86 +1.1
4,636,402 - -1.9
4,636,416 + +0.7
4,636,466 + +0.5
4,636,466 + +0.1
4,636,569 + -0.2
4,636,569 + +0.3
4,636,575 - -1.3
4,636,626 + MPMX20_04435 0.13 +0.8
4,636,644 + MPMX20_04435 0.14 +1.2
4,636,649 + MPMX20_04435 0.14 +0.5
4,636,661 + MPMX20_04435 0.15 +0.4
4,636,693 - MPMX20_04435 0.18 -2.2
4,636,712 + MPMX20_04435 0.19 +2.6
4,636,723 + MPMX20_04435 0.20 +1.8
4,636,731 - MPMX20_04435 0.20 -0.3
4,636,765 - MPMX20_04435 0.23 +1.1

Or see this region's nucleotide sequence