Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03908

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03906 and MPMX20_03907 are separated by 236 nucleotidesMPMX20_03907 and MPMX20_03908 are separated by 114 nucleotidesMPMX20_03908 and MPMX20_03909 are separated by 150 nucleotides MPMX20_03906: MPMX20_03906 - tRNA N6-adenosine threonylcarbamoyltransferase, at 4,114,670 to 4,115,683 _03906 MPMX20_03907: MPMX20_03907 - 30S ribosomal protein S21, at 4,115,920 to 4,116,135 _03907 MPMX20_03908: MPMX20_03908 - DNA primase, at 4,116,250 to 4,117,995 _03908 MPMX20_03909: MPMX20_03909 - RNA polymerase sigma factor RpoD, at 4,118,146 to 4,119,993 _03909 Position (kb) 4116 4117 4118Strain fitness (log2 ratio) -2 -1 0 1 2at 4115.700 kb on + strandat 4115.708 kb on - strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.715 kb on + strandat 4115.721 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.723 kb on - strandat 4115.765 kb on + strandat 4115.769 kb on + strandat 4115.769 kb on + strandat 4115.769 kb on + strandat 4115.769 kb on + strandat 4115.777 kb on + strandat 4115.777 kb on - strandat 4115.777 kb on - strandat 4115.777 kb on - strandat 4115.777 kb on - strandat 4115.779 kb on + strandat 4115.779 kb on + strandat 4115.779 kb on + strandat 4115.785 kb on - strandat 4115.786 kb on - strandat 4115.787 kb on - strandat 4116.157 kb on + strandat 4118.041 kb on + strandat 4118.045 kb on + strandat 4118.083 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
remove
4,115,700 + -0.2
4,115,708 - -0.1
4,115,715 + -0.4
4,115,715 + +0.9
4,115,715 + -0.7
4,115,715 + -0.9
4,115,715 + -0.8
4,115,715 + -0.7
4,115,715 + +1.3
4,115,715 + -1.9
4,115,715 + -1.6
4,115,715 + -0.4
4,115,715 + +0.3
4,115,715 + -0.4
4,115,721 - -0.0
4,115,723 - -0.8
4,115,723 - -1.5
4,115,723 - -0.8
4,115,723 - -0.1
4,115,723 - +1.9
4,115,723 - -1.1
4,115,723 - +0.3
4,115,723 - -0.0
4,115,723 - -0.8
4,115,723 - -0.3
4,115,723 - -0.6
4,115,723 - -1.1
4,115,723 - -0.7
4,115,723 - -0.8
4,115,723 - +0.6
4,115,723 - -1.9
4,115,723 - -1.7
4,115,723 - -0.1
4,115,723 - +0.2
4,115,765 + -0.1
4,115,769 + +0.8
4,115,769 + -1.2
4,115,769 + +0.9
4,115,769 + +0.4
4,115,777 + -2.1
4,115,777 - -1.0
4,115,777 - -2.4
4,115,777 - +1.0
4,115,777 - +0.3
4,115,779 + -0.8
4,115,779 + -0.1
4,115,779 + -0.2
4,115,785 - +0.3
4,115,786 - +0.0
4,115,787 - +0.2
4,116,157 + -0.7
4,118,041 + +0.3
4,118,045 + -0.1
4,118,083 + -0.1

Or see this region's nucleotide sequence