Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03906 and MPMX20_03907 are separated by 236 nucleotides MPMX20_03907 and MPMX20_03908 are separated by 114 nucleotides MPMX20_03908 and MPMX20_03909 are separated by 150 nucleotides
MPMX20_03906: MPMX20_03906 - tRNA N6-adenosine threonylcarbamoyltransferase, at 4,114,670 to 4,115,683
_03906
MPMX20_03907: MPMX20_03907 - 30S ribosomal protein S21, at 4,115,920 to 4,116,135
_03907
MPMX20_03908: MPMX20_03908 - DNA primase, at 4,116,250 to 4,117,995
_03908
MPMX20_03909: MPMX20_03909 - RNA polymerase sigma factor RpoD, at 4,118,146 to 4,119,993
_03909
Position (kb)
4116
4117
4118 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4115.700 kb on + strand at 4115.708 kb on - strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.715 kb on + strand at 4115.721 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.723 kb on - strand at 4115.765 kb on + strand at 4115.769 kb on + strand at 4115.769 kb on + strand at 4115.769 kb on + strand at 4115.769 kb on + strand at 4115.777 kb on + strand at 4115.777 kb on - strand at 4115.777 kb on - strand at 4115.777 kb on - strand at 4115.777 kb on - strand at 4115.779 kb on + strand at 4115.779 kb on + strand at 4115.779 kb on + strand at 4115.785 kb on - strand at 4115.786 kb on - strand at 4115.787 kb on - strand at 4116.157 kb on + strand at 4118.041 kb on + strand at 4118.045 kb on + strand at 4118.083 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 4,115,700 + -0.2 4,115,708 - -0.1 4,115,715 + -0.4 4,115,715 + +0.9 4,115,715 + -0.7 4,115,715 + -0.9 4,115,715 + -0.8 4,115,715 + -0.7 4,115,715 + +1.3 4,115,715 + -1.9 4,115,715 + -1.6 4,115,715 + -0.4 4,115,715 + +0.3 4,115,715 + -0.4 4,115,721 - -0.0 4,115,723 - -0.8 4,115,723 - -1.5 4,115,723 - -0.8 4,115,723 - -0.1 4,115,723 - +1.9 4,115,723 - -1.1 4,115,723 - +0.3 4,115,723 - -0.0 4,115,723 - -0.8 4,115,723 - -0.3 4,115,723 - -0.6 4,115,723 - -1.1 4,115,723 - -0.7 4,115,723 - -0.8 4,115,723 - +0.6 4,115,723 - -1.9 4,115,723 - -1.7 4,115,723 - -0.1 4,115,723 - +0.2 4,115,765 + -0.1 4,115,769 + +0.8 4,115,769 + -1.2 4,115,769 + +0.9 4,115,769 + +0.4 4,115,777 + -2.1 4,115,777 - -1.0 4,115,777 - -2.4 4,115,777 - +1.0 4,115,777 - +0.3 4,115,779 + -0.8 4,115,779 + -0.1 4,115,779 + -0.2 4,115,785 - +0.3 4,115,786 - +0.0 4,115,787 - +0.2 4,116,157 + -0.7 4,118,041 + +0.3 4,118,045 + -0.1 4,118,083 + -0.1
Or see this region's nucleotide sequence