Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03112 and MPMX20_03113 are separated by 194 nucleotides MPMX20_03113 and MPMX20_03114 overlap by 4 nucleotides MPMX20_03114 and MPMX20_03115 are separated by 129 nucleotides
MPMX20_03112: MPMX20_03112 - tRNA-dihydrouridine(16) synthase, at 3,268,334 to 3,269,266
_03112
MPMX20_03113: MPMX20_03113 - hypothetical protein, at 3,269,461 to 3,269,859
_03113
MPMX20_03114: MPMX20_03114 - Inner membrane protein YohK, at 3,269,856 to 3,270,551
_03114
MPMX20_03115: MPMX20_03115 - Cytidine deaminase, at 3,270,681 to 3,271,565
_03115
Position (kb)
3269
3270
3271 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.857 kb on - strand, within MPMX20_03112 at 3268.881 kb on + strand, within MPMX20_03112 at 3268.905 kb on + strand, within MPMX20_03112 at 3268.913 kb on - strand, within MPMX20_03112 at 3268.913 kb on - strand, within MPMX20_03112 at 3268.990 kb on - strand, within MPMX20_03112 at 3269.001 kb on + strand, within MPMX20_03112 at 3269.008 kb on + strand, within MPMX20_03112 at 3269.081 kb on + strand, within MPMX20_03112 at 3269.096 kb on + strand, within MPMX20_03112 at 3269.096 kb on + strand, within MPMX20_03112 at 3269.110 kb on + strand, within MPMX20_03112 at 3269.221 kb on + strand at 3269.246 kb on - strand at 3269.250 kb on - strand at 3269.323 kb on + strand at 3269.324 kb on - strand at 3269.349 kb on + strand at 3269.351 kb on - strand at 3269.352 kb on - strand at 3269.371 kb on + strand at 3269.379 kb on - strand at 3269.494 kb on - strand at 3269.501 kb on + strand, within MPMX20_03113 at 3269.511 kb on + strand, within MPMX20_03113 at 3269.511 kb on + strand, within MPMX20_03113 at 3269.581 kb on + strand, within MPMX20_03113 at 3269.637 kb on + strand, within MPMX20_03113 at 3269.637 kb on + strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.645 kb on - strand, within MPMX20_03113 at 3269.650 kb on - strand, within MPMX20_03113 at 3269.651 kb on + strand, within MPMX20_03113 at 3269.659 kb on - strand, within MPMX20_03113 at 3269.696 kb on + strand, within MPMX20_03113 at 3269.704 kb on - strand, within MPMX20_03113 at 3269.704 kb on - strand, within MPMX20_03113 at 3269.766 kb on - strand, within MPMX20_03113 at 3269.900 kb on + strand at 3269.908 kb on - strand at 3269.908 kb on - strand at 3269.978 kb on - strand, within MPMX20_03114 at 3270.077 kb on - strand, within MPMX20_03114 at 3270.188 kb on + strand, within MPMX20_03114 at 3270.188 kb on + strand, within MPMX20_03114 at 3270.191 kb on - strand, within MPMX20_03114 at 3270.196 kb on - strand, within MPMX20_03114 at 3270.235 kb on - strand, within MPMX20_03114 at 3270.283 kb on - strand, within MPMX20_03114 at 3270.379 kb on - strand, within MPMX20_03114 at 3270.414 kb on + strand, within MPMX20_03114 at 3270.414 kb on + strand, within MPMX20_03114 at 3270.422 kb on - strand, within MPMX20_03114 at 3270.422 kb on - strand, within MPMX20_03114 at 3270.438 kb on + strand, within MPMX20_03114 at 3270.648 kb on - strand at 3270.655 kb on + strand at 3270.740 kb on + strand at 3270.784 kb on - strand, within MPMX20_03115 at 3270.784 kb on - strand, within MPMX20_03115 at 3270.789 kb on - strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.816 kb on + strand, within MPMX20_03115 at 3270.856 kb on - strand, within MPMX20_03115 at 3270.933 kb on - strand, within MPMX20_03115 at 3270.967 kb on + strand, within MPMX20_03115 at 3270.998 kb on - strand, within MPMX20_03115 at 3271.013 kb on - strand, within MPMX20_03115 at 3271.075 kb on + strand, within MPMX20_03115 at 3271.100 kb on - strand, within MPMX20_03115 at 3271.148 kb on - strand, within MPMX20_03115 at 3271.243 kb on + strand, within MPMX20_03115 at 3271.281 kb on - strand, within MPMX20_03115 at 3271.283 kb on + strand, within MPMX20_03115 at 3271.301 kb on - strand, within MPMX20_03115 at 3271.330 kb on + strand, within MPMX20_03115 at 3271.370 kb on - strand, within MPMX20_03115 at 3271.398 kb on + strand, within MPMX20_03115 at 3271.406 kb on - strand, within MPMX20_03115 at 3271.431 kb on + strand, within MPMX20_03115 at 3271.431 kb on - strand, within MPMX20_03115 at 3271.439 kb on - strand, within MPMX20_03115
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 3,268,857 - MPMX20_03112 0.56 +0.7 3,268,857 - MPMX20_03112 0.56 +0.6 3,268,857 - MPMX20_03112 0.56 -0.2 3,268,857 - MPMX20_03112 0.56 -3.1 3,268,857 - MPMX20_03112 0.56 -0.9 3,268,857 - MPMX20_03112 0.56 +0.3 3,268,881 + MPMX20_03112 0.59 -0.3 3,268,905 + MPMX20_03112 0.61 -1.1 3,268,913 - MPMX20_03112 0.62 +0.6 3,268,913 - MPMX20_03112 0.62 -1.3 3,268,990 - MPMX20_03112 0.70 +0.1 3,269,001 + MPMX20_03112 0.71 -1.7 3,269,008 + MPMX20_03112 0.72 +1.2 3,269,081 + MPMX20_03112 0.80 -0.2 3,269,096 + MPMX20_03112 0.82 +0.4 3,269,096 + MPMX20_03112 0.82 +1.3 3,269,110 + MPMX20_03112 0.83 -1.0 3,269,221 + +0.8 3,269,246 - +0.7 3,269,250 - -1.2 3,269,323 + -0.9 3,269,324 - -3.7 3,269,349 + +1.9 3,269,351 - -1.0 3,269,352 - +0.9 3,269,371 + -0.1 3,269,379 - +1.7 3,269,494 - -0.5 3,269,501 + MPMX20_03113 0.10 +0.9 3,269,511 + MPMX20_03113 0.13 +0.9 3,269,511 + MPMX20_03113 0.13 -0.9 3,269,581 + MPMX20_03113 0.30 +0.3 3,269,637 + MPMX20_03113 0.44 +2.9 3,269,637 + MPMX20_03113 0.44 +1.9 3,269,645 - MPMX20_03113 0.46 +0.5 3,269,645 - MPMX20_03113 0.46 +0.7 3,269,645 - MPMX20_03113 0.46 +0.5 3,269,645 - MPMX20_03113 0.46 -1.3 3,269,645 - MPMX20_03113 0.46 +1.0 3,269,650 - MPMX20_03113 0.47 -2.2 3,269,651 + MPMX20_03113 0.48 -0.6 3,269,659 - MPMX20_03113 0.50 -0.7 3,269,696 + MPMX20_03113 0.59 +0.4 3,269,704 - MPMX20_03113 0.61 +1.5 3,269,704 - MPMX20_03113 0.61 -0.4 3,269,766 - MPMX20_03113 0.76 -0.6 3,269,900 + +0.6 3,269,908 - -0.8 3,269,908 - -0.6 3,269,978 - MPMX20_03114 0.18 -0.4 3,270,077 - MPMX20_03114 0.32 -1.2 3,270,188 + MPMX20_03114 0.48 -2.0 3,270,188 + MPMX20_03114 0.48 +2.7 3,270,191 - MPMX20_03114 0.48 -0.6 3,270,196 - MPMX20_03114 0.49 -0.8 3,270,235 - MPMX20_03114 0.54 -0.5 3,270,283 - MPMX20_03114 0.61 -1.2 3,270,379 - MPMX20_03114 0.75 -0.6 3,270,414 + MPMX20_03114 0.80 -1.9 3,270,414 + MPMX20_03114 0.80 +1.4 3,270,422 - MPMX20_03114 0.81 -1.2 3,270,422 - MPMX20_03114 0.81 +0.1 3,270,438 + MPMX20_03114 0.84 -0.9 3,270,648 - -0.4 3,270,655 + -0.9 3,270,740 + -0.3 3,270,784 - MPMX20_03115 0.12 +0.3 3,270,784 - MPMX20_03115 0.12 -0.3 3,270,789 - MPMX20_03115 0.12 +0.6 3,270,816 + MPMX20_03115 0.15 +0.3 3,270,816 + MPMX20_03115 0.15 +1.2 3,270,816 + MPMX20_03115 0.15 +0.1 3,270,856 - MPMX20_03115 0.20 -1.5 3,270,933 - MPMX20_03115 0.28 -1.5 3,270,967 + MPMX20_03115 0.32 +0.9 3,270,998 - MPMX20_03115 0.36 -0.0 3,271,013 - MPMX20_03115 0.38 -0.4 3,271,075 + MPMX20_03115 0.45 +0.8 3,271,100 - MPMX20_03115 0.47 -1.9 3,271,148 - MPMX20_03115 0.53 -1.7 3,271,243 + MPMX20_03115 0.64 +0.9 3,271,281 - MPMX20_03115 0.68 +2.5 3,271,283 + MPMX20_03115 0.68 +0.4 3,271,301 - MPMX20_03115 0.70 -3.0 3,271,330 + MPMX20_03115 0.73 +1.6 3,271,370 - MPMX20_03115 0.78 +0.1 3,271,398 + MPMX20_03115 0.81 -0.3 3,271,406 - MPMX20_03115 0.82 -0.9 3,271,431 + MPMX20_03115 0.85 +0.3 3,271,431 - MPMX20_03115 0.85 +2.2 3,271,439 - MPMX20_03115 0.86 -0.3
Or see this region's nucleotide sequence