Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02768 and MPMX20_02769 are separated by 34 nucleotides MPMX20_02769 and MPMX20_02770 are separated by 27 nucleotides MPMX20_02770 and MPMX20_02771 are separated by 1 nucleotides
MPMX20_02768: MPMX20_02768 - Crossover junction endodeoxyribonuclease RuvC, at 2,923,397 to 2,923,918
_02768
MPMX20_02769: MPMX20_02769 - putative transcriptional regulatory protein YebC, at 2,923,953 to 2,924,693
_02769
MPMX20_02770: MPMX20_02770 - Dihydroneopterin triphosphate diphosphatase, at 2,924,721 to 2,925,164
_02770
MPMX20_02771: MPMX20_02771 - Aspartate--tRNA ligase, at 2,925,166 to 2,926,953
_02771
Position (kb)
2924
2925
2926 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.783 kb on - strand, within MPMX20_02768 at 2923.902 kb on - strand at 2923.928 kb on + strand at 2924.203 kb on - strand, within MPMX20_02769 at 2924.317 kb on + strand, within MPMX20_02769 at 2924.414 kb on + strand, within MPMX20_02769 at 2924.421 kb on + strand, within MPMX20_02769 at 2924.527 kb on + strand, within MPMX20_02769 at 2924.535 kb on - strand, within MPMX20_02769 at 2924.577 kb on + strand, within MPMX20_02769 at 2924.577 kb on + strand, within MPMX20_02769 at 2924.650 kb on + strand at 2924.658 kb on - strand at 2924.668 kb on - strand at 2924.668 kb on - strand at 2924.780 kb on + strand, within MPMX20_02770 at 2924.783 kb on - strand, within MPMX20_02770 at 2924.788 kb on - strand, within MPMX20_02770 at 2924.788 kb on - strand, within MPMX20_02770 at 2924.944 kb on - strand, within MPMX20_02770 at 2924.962 kb on - strand, within MPMX20_02770 at 2924.989 kb on - strand, within MPMX20_02770 at 2925.041 kb on + strand, within MPMX20_02770 at 2925.041 kb on + strand, within MPMX20_02770 at 2925.049 kb on - strand, within MPMX20_02770 at 2925.049 kb on - strand, within MPMX20_02770 at 2925.151 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 2,923,783 - MPMX20_02768 0.74 -1.4 2,923,783 - MPMX20_02768 0.74 -1.3 2,923,902 - +0.6 2,923,928 + -3.8 2,924,203 - MPMX20_02769 0.34 +0.9 2,924,317 + MPMX20_02769 0.49 -1.6 2,924,414 + MPMX20_02769 0.62 -2.0 2,924,421 + MPMX20_02769 0.63 -2.3 2,924,527 + MPMX20_02769 0.77 -1.1 2,924,535 - MPMX20_02769 0.79 +0.9 2,924,577 + MPMX20_02769 0.84 +0.3 2,924,577 + MPMX20_02769 0.84 -1.6 2,924,650 + -3.1 2,924,658 - +0.8 2,924,668 - +2.9 2,924,668 - -0.1 2,924,780 + MPMX20_02770 0.13 -3.0 2,924,783 - MPMX20_02770 0.14 -0.4 2,924,788 - MPMX20_02770 0.15 -0.9 2,924,788 - MPMX20_02770 0.15 -3.9 2,924,944 - MPMX20_02770 0.50 -2.2 2,924,962 - MPMX20_02770 0.54 -3.1 2,924,989 - MPMX20_02770 0.60 -0.6 2,925,041 + MPMX20_02770 0.72 -0.3 2,925,041 + MPMX20_02770 0.72 -3.6 2,925,049 - MPMX20_02770 0.74 -0.3 2,925,049 - MPMX20_02770 0.74 -0.9 2,925,151 + -1.6
Or see this region's nucleotide sequence