Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01785

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01782 and MPMX20_01783 are separated by 158 nucleotidesMPMX20_01783 and MPMX20_01784 are separated by 42 nucleotidesMPMX20_01784 and MPMX20_01785 are separated by 1 nucleotidesMPMX20_01785 and MPMX20_01786 are separated by 10 nucleotidesMPMX20_01786 and MPMX20_01787 overlap by 20 nucleotides MPMX20_01782: MPMX20_01782 - FhuE receptor, at 1,874,433 to 1,876,622 _01782 MPMX20_01783: MPMX20_01783 - hypothetical protein, at 1,876,781 to 1,876,930 _01783 MPMX20_01784: MPMX20_01784 - Purine nucleoside phosphoramidase, at 1,876,973 to 1,877,332 _01784 MPMX20_01785: MPMX20_01785 - hypothetical protein, at 1,877,334 to 1,877,708 _01785 MPMX20_01786: MPMX20_01786 - Penicillin-binding protein activator LpoB, at 1,877,719 to 1,878,366 _01786 MPMX20_01787: MPMX20_01787 - Thiamine kinase, at 1,878,347 to 1,879,171 _01787 Position (kb) 1877 1878Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1876.419 kb on + strandat 1876.429 kb on + strandat 1876.434 kb on + strandat 1876.434 kb on + strandat 1876.434 kb on + strandat 1876.442 kb on - strandat 1876.442 kb on - strandat 1876.443 kb on - strandat 1876.514 kb on + strandat 1876.547 kb on + strandat 1876.582 kb on + strandat 1876.586 kb on + strandat 1876.590 kb on - strandat 1876.592 kb on + strandat 1876.595 kb on - strandat 1876.605 kb on - strandat 1876.651 kb on + strandat 1876.651 kb on + strandat 1876.651 kb on + strandat 1876.652 kb on + strandat 1876.659 kb on - strandat 1876.676 kb on + strandat 1876.808 kb on + strand, within MPMX20_01783at 1876.815 kb on - strand, within MPMX20_01783at 1876.815 kb on - strand, within MPMX20_01783at 1876.823 kb on - strand, within MPMX20_01783at 1876.824 kb on - strand, within MPMX20_01783at 1876.824 kb on - strand, within MPMX20_01783at 1876.824 kb on - strand, within MPMX20_01783at 1876.826 kb on - strand, within MPMX20_01783at 1876.833 kb on - strand, within MPMX20_01783at 1876.873 kb on + strand, within MPMX20_01783at 1876.881 kb on - strand, within MPMX20_01783at 1876.881 kb on - strand, within MPMX20_01783at 1876.900 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.908 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.910 kb on + strand, within MPMX20_01783at 1876.916 kb on - strandat 1876.916 kb on - strandat 1876.916 kb on - strandat 1876.916 kb on - strandat 1876.916 kb on - strandat 1876.918 kb on - strandat 1876.918 kb on - strandat 1876.939 kb on + strandat 1876.943 kb on + strandat 1877.153 kb on + strand, within MPMX20_01784at 1877.153 kb on + strand, within MPMX20_01784at 1877.160 kb on + strand, within MPMX20_01784at 1877.161 kb on - strand, within MPMX20_01784at 1877.161 kb on - strand, within MPMX20_01784at 1877.161 kb on - strand, within MPMX20_01784at 1877.161 kb on - strand, within MPMX20_01784at 1877.173 kb on - strand, within MPMX20_01784at 1877.223 kb on - strand, within MPMX20_01784at 1877.245 kb on + strand, within MPMX20_01784at 1877.335 kb on + strandat 1877.350 kb on + strandat 1877.355 kb on - strandat 1877.426 kb on - strand, within MPMX20_01785at 1877.430 kb on + strand, within MPMX20_01785at 1877.440 kb on + strand, within MPMX20_01785at 1877.495 kb on + strand, within MPMX20_01785at 1877.647 kb on + strand, within MPMX20_01785at 1877.649 kb on + strand, within MPMX20_01785at 1877.676 kb on - strandat 1877.679 kb on + strandat 1877.689 kb on + strandat 1877.698 kb on - strandat 1877.710 kb on + strandat 1877.711 kb on + strandat 1877.718 kb on - strandat 1877.766 kb on + strandat 1877.774 kb on - strandat 1877.780 kb on + strandat 1877.797 kb on - strand, within MPMX20_01786at 1877.797 kb on - strand, within MPMX20_01786at 1877.807 kb on - strand, within MPMX20_01786at 1877.977 kb on - strand, within MPMX20_01786at 1878.003 kb on + strand, within MPMX20_01786at 1878.003 kb on + strand, within MPMX20_01786at 1878.011 kb on - strand, within MPMX20_01786at 1878.026 kb on + strand, within MPMX20_01786at 1878.026 kb on + strand, within MPMX20_01786at 1878.106 kb on + strand, within MPMX20_01786at 1878.133 kb on - strand, within MPMX20_01786at 1878.143 kb on - strand, within MPMX20_01786at 1878.194 kb on + strand, within MPMX20_01786at 1878.194 kb on + strand, within MPMX20_01786at 1878.197 kb on - strand, within MPMX20_01786at 1878.252 kb on + strand, within MPMX20_01786at 1878.312 kb on + strandat 1878.355 kb on + strandat 1878.427 kb on + strandat 1878.488 kb on - strand, within MPMX20_01787at 1878.488 kb on - strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.506 kb on + strand, within MPMX20_01787at 1878.608 kb on + strand, within MPMX20_01787at 1878.616 kb on + strand, within MPMX20_01787at 1878.616 kb on - strand, within MPMX20_01787at 1878.616 kb on - strand, within MPMX20_01787at 1878.661 kb on + strand, within MPMX20_01787at 1878.681 kb on - strand, within MPMX20_01787at 1878.698 kb on + strand, within MPMX20_01787

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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1,876,419 + +0.1
1,876,429 + -0.8
1,876,434 + +0.5
1,876,434 + +0.6
1,876,434 + -2.2
1,876,442 - -0.9
1,876,442 - -0.9
1,876,443 - -0.0
1,876,514 + -1.0
1,876,547 + -0.2
1,876,582 + +2.2
1,876,586 + +0.4
1,876,590 - -0.7
1,876,592 + +2.7
1,876,595 - -0.0
1,876,605 - +1.3
1,876,651 + +2.8
1,876,651 + -1.0
1,876,651 + +0.3
1,876,652 + +0.7
1,876,659 - +3.5
1,876,676 + -0.9
1,876,808 + MPMX20_01783 0.18 +0.5
1,876,815 - MPMX20_01783 0.23 -0.2
1,876,815 - MPMX20_01783 0.23 +0.9
1,876,823 - MPMX20_01783 0.28 +0.3
1,876,824 - MPMX20_01783 0.29 -0.1
1,876,824 - MPMX20_01783 0.29 +0.4
1,876,824 - MPMX20_01783 0.29 +1.3
1,876,826 - MPMX20_01783 0.30 +0.8
1,876,833 - MPMX20_01783 0.35 -2.3
1,876,873 + MPMX20_01783 0.61 +1.3
1,876,881 - MPMX20_01783 0.67 -1.2
1,876,881 - MPMX20_01783 0.67 -1.8
1,876,900 + MPMX20_01783 0.79 +0.2
1,876,908 + MPMX20_01783 0.85 +1.1
1,876,908 + MPMX20_01783 0.85 +0.5
1,876,908 + MPMX20_01783 0.85 -0.9
1,876,908 + MPMX20_01783 0.85 +2.2
1,876,908 + MPMX20_01783 0.85 +0.1
1,876,908 + MPMX20_01783 0.85 -0.5
1,876,908 + MPMX20_01783 0.85 -2.3
1,876,908 + MPMX20_01783 0.85 -2.0
1,876,908 + MPMX20_01783 0.85 -1.2
1,876,908 + MPMX20_01783 0.85 -0.0
1,876,908 + MPMX20_01783 0.85 -1.8
1,876,908 + MPMX20_01783 0.85 +0.8
1,876,908 + MPMX20_01783 0.85 +0.1
1,876,908 + MPMX20_01783 0.85 +0.9
1,876,908 + MPMX20_01783 0.85 -0.0
1,876,908 + MPMX20_01783 0.85 -1.6
1,876,908 + MPMX20_01783 0.85 -0.8
1,876,908 + MPMX20_01783 0.85 -0.1
1,876,908 + MPMX20_01783 0.85 +0.1
1,876,908 + MPMX20_01783 0.85 +1.2
1,876,908 + MPMX20_01783 0.85 +1.4
1,876,908 + MPMX20_01783 0.85 +0.3
1,876,908 + MPMX20_01783 0.85 -0.4
1,876,908 + MPMX20_01783 0.85 -0.2
1,876,908 + MPMX20_01783 0.85 +1.8
1,876,908 + MPMX20_01783 0.85 -1.5
1,876,908 + MPMX20_01783 0.85 -1.1
1,876,908 + MPMX20_01783 0.85 +0.0
1,876,908 + MPMX20_01783 0.85 +0.4
1,876,908 + MPMX20_01783 0.85 +0.5
1,876,908 + MPMX20_01783 0.85 -1.2
1,876,908 + MPMX20_01783 0.85 -2.2
1,876,908 + MPMX20_01783 0.85 +0.7
1,876,908 + MPMX20_01783 0.85 +1.8
1,876,908 + MPMX20_01783 0.85 -1.0
1,876,908 + MPMX20_01783 0.85 -1.6
1,876,908 + MPMX20_01783 0.85 -0.5
1,876,908 + MPMX20_01783 0.85 -0.3
1,876,908 + MPMX20_01783 0.85 +0.0
1,876,908 + MPMX20_01783 0.85 -0.1
1,876,910 + MPMX20_01783 0.86 +0.9
1,876,910 + MPMX20_01783 0.86 +1.3
1,876,910 + MPMX20_01783 0.86 +1.1
1,876,910 + MPMX20_01783 0.86 +1.1
1,876,910 + MPMX20_01783 0.86 +0.8
1,876,910 + MPMX20_01783 0.86 -1.9
1,876,910 + MPMX20_01783 0.86 +0.1
1,876,910 + MPMX20_01783 0.86 -0.6
1,876,916 - -2.6
1,876,916 - -1.8
1,876,916 - -1.0
1,876,916 - -1.2
1,876,916 - -1.0
1,876,918 - -1.0
1,876,918 - +1.8
1,876,939 + +1.2
1,876,943 + -1.6
1,877,153 + MPMX20_01784 0.50 -1.9
1,877,153 + MPMX20_01784 0.50 -2.6
1,877,160 + MPMX20_01784 0.52 -0.9
1,877,161 - MPMX20_01784 0.52 +0.1
1,877,161 - MPMX20_01784 0.52 -1.0
1,877,161 - MPMX20_01784 0.52 -1.7
1,877,161 - MPMX20_01784 0.52 +0.8
1,877,173 - MPMX20_01784 0.56 +0.2
1,877,223 - MPMX20_01784 0.69 -2.3
1,877,245 + MPMX20_01784 0.76 -1.5
1,877,335 + +0.7
1,877,350 + -0.6
1,877,355 - +0.5
1,877,426 - MPMX20_01785 0.25 +0.4
1,877,430 + MPMX20_01785 0.26 -0.5
1,877,440 + MPMX20_01785 0.28 -0.9
1,877,495 + MPMX20_01785 0.43 +1.5
1,877,647 + MPMX20_01785 0.83 -1.1
1,877,649 + MPMX20_01785 0.84 +1.6
1,877,676 - +0.7
1,877,679 + -0.3
1,877,689 + -1.2
1,877,698 - +0.1
1,877,710 + -2.4
1,877,711 + -0.5
1,877,718 - -0.0
1,877,766 + +2.2
1,877,774 - +0.6
1,877,780 + +0.4
1,877,797 - MPMX20_01786 0.12 -1.0
1,877,797 - MPMX20_01786 0.12 -0.3
1,877,807 - MPMX20_01786 0.14 +0.2
1,877,977 - MPMX20_01786 0.40 -0.3
1,878,003 + MPMX20_01786 0.44 +0.9
1,878,003 + MPMX20_01786 0.44 +1.2
1,878,011 - MPMX20_01786 0.45 -0.6
1,878,026 + MPMX20_01786 0.47 +0.2
1,878,026 + MPMX20_01786 0.47 +1.7
1,878,106 + MPMX20_01786 0.60 -0.6
1,878,133 - MPMX20_01786 0.64 +0.5
1,878,143 - MPMX20_01786 0.65 +0.8
1,878,194 + MPMX20_01786 0.73 +0.9
1,878,194 + MPMX20_01786 0.73 +2.0
1,878,197 - MPMX20_01786 0.74 -0.1
1,878,252 + MPMX20_01786 0.82 +1.5
1,878,312 + +1.2
1,878,355 + +1.0
1,878,427 + +2.7
1,878,488 - MPMX20_01787 0.17 +1.1
1,878,488 - MPMX20_01787 0.17 -1.8
1,878,506 + MPMX20_01787 0.19 -0.9
1,878,506 + MPMX20_01787 0.19 -0.2
1,878,506 + MPMX20_01787 0.19 -0.3
1,878,608 + MPMX20_01787 0.32 -1.3
1,878,616 + MPMX20_01787 0.33 -1.4
1,878,616 - MPMX20_01787 0.33 +0.9
1,878,616 - MPMX20_01787 0.33 -1.9
1,878,661 + MPMX20_01787 0.38 +0.7
1,878,681 - MPMX20_01787 0.40 +0.4
1,878,698 + MPMX20_01787 0.43 -0.2

Or see this region's nucleotide sequence