Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01677

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01676 and MPMX20_01677 are separated by 11 nucleotidesMPMX20_01677 and MPMX20_01678 are separated by 2 nucleotides MPMX20_01676: MPMX20_01676 - hypothetical protein, at 1,774,822 to 1,776,126 _01676 MPMX20_01677: MPMX20_01677 - L-arabinose transport system permease protein AraQ, at 1,776,138 to 1,776,989 _01677 MPMX20_01678: MPMX20_01678 - Arabinogalactan endo-beta-1,4-galactanase, at 1,776,992 to 1,778,194 _01678 Position (kb) 1776 1777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1775.151 kb on + strand, within MPMX20_01676at 1775.159 kb on - strand, within MPMX20_01676at 1775.175 kb on + strand, within MPMX20_01676at 1775.183 kb on - strand, within MPMX20_01676at 1775.183 kb on - strand, within MPMX20_01676at 1775.240 kb on + strand, within MPMX20_01676at 1775.240 kb on - strand, within MPMX20_01676at 1775.247 kb on - strand, within MPMX20_01676at 1775.254 kb on - strand, within MPMX20_01676at 1775.304 kb on - strand, within MPMX20_01676at 1775.312 kb on + strand, within MPMX20_01676at 1775.318 kb on + strand, within MPMX20_01676at 1775.336 kb on + strand, within MPMX20_01676at 1775.368 kb on - strand, within MPMX20_01676at 1775.411 kb on + strand, within MPMX20_01676at 1775.436 kb on + strand, within MPMX20_01676at 1775.438 kb on + strand, within MPMX20_01676at 1775.444 kb on - strand, within MPMX20_01676at 1775.444 kb on - strand, within MPMX20_01676at 1775.444 kb on - strand, within MPMX20_01676at 1775.444 kb on - strand, within MPMX20_01676at 1775.448 kb on + strand, within MPMX20_01676at 1775.448 kb on + strand, within MPMX20_01676at 1775.456 kb on - strand, within MPMX20_01676at 1775.466 kb on + strand, within MPMX20_01676at 1775.471 kb on - strand, within MPMX20_01676at 1775.484 kb on + strand, within MPMX20_01676at 1775.490 kb on - strand, within MPMX20_01676at 1775.591 kb on - strand, within MPMX20_01676at 1775.606 kb on - strand, within MPMX20_01676at 1775.693 kb on - strand, within MPMX20_01676at 1775.737 kb on - strand, within MPMX20_01676at 1775.753 kb on - strand, within MPMX20_01676at 1775.781 kb on + strand, within MPMX20_01676at 1775.802 kb on - strand, within MPMX20_01676at 1775.831 kb on + strand, within MPMX20_01676at 1775.831 kb on + strand, within MPMX20_01676at 1775.850 kb on + strand, within MPMX20_01676at 1775.858 kb on + strand, within MPMX20_01676at 1775.866 kb on - strand, within MPMX20_01676at 1775.895 kb on - strand, within MPMX20_01676at 1775.912 kb on + strand, within MPMX20_01676at 1775.933 kb on - strand, within MPMX20_01676at 1775.933 kb on - strand, within MPMX20_01676at 1775.959 kb on - strand, within MPMX20_01676at 1776.016 kb on + strandat 1776.041 kb on + strandat 1776.046 kb on - strandat 1776.120 kb on + strandat 1776.121 kb on + strandat 1776.129 kb on - strandat 1776.154 kb on + strandat 1776.154 kb on + strandat 1776.162 kb on - strandat 1776.162 kb on - strandat 1776.188 kb on + strandat 1776.283 kb on + strand, within MPMX20_01677at 1776.317 kb on + strand, within MPMX20_01677at 1776.325 kb on - strand, within MPMX20_01677at 1776.325 kb on - strand, within MPMX20_01677at 1776.413 kb on - strand, within MPMX20_01677at 1776.413 kb on - strand, within MPMX20_01677at 1776.429 kb on + strand, within MPMX20_01677at 1776.429 kb on + strand, within MPMX20_01677at 1776.429 kb on + strand, within MPMX20_01677at 1776.554 kb on - strand, within MPMX20_01677at 1776.678 kb on + strand, within MPMX20_01677at 1776.755 kb on + strand, within MPMX20_01677at 1776.819 kb on - strand, within MPMX20_01677at 1776.824 kb on + strand, within MPMX20_01677at 1776.908 kb on - strandat 1776.963 kb on - strandat 1776.983 kb on + strandat 1776.984 kb on - strandat 1777.000 kb on + strandat 1777.066 kb on - strandat 1777.068 kb on + strandat 1777.076 kb on - strandat 1777.076 kb on - strandat 1777.125 kb on + strand, within MPMX20_01678at 1777.125 kb on + strand, within MPMX20_01678at 1777.133 kb on - strand, within MPMX20_01678at 1777.133 kb on - strand, within MPMX20_01678at 1777.135 kb on + strand, within MPMX20_01678at 1777.135 kb on + strand, within MPMX20_01678at 1777.135 kb on + strand, within MPMX20_01678at 1777.135 kb on + strand, within MPMX20_01678at 1777.143 kb on - strand, within MPMX20_01678at 1777.143 kb on - strand, within MPMX20_01678at 1777.143 kb on - strand, within MPMX20_01678at 1777.145 kb on + strand, within MPMX20_01678at 1777.148 kb on - strand, within MPMX20_01678at 1777.217 kb on + strand, within MPMX20_01678at 1777.227 kb on + strand, within MPMX20_01678at 1777.407 kb on - strand, within MPMX20_01678at 1777.438 kb on + strand, within MPMX20_01678at 1777.476 kb on - strand, within MPMX20_01678at 1777.481 kb on - strand, within MPMX20_01678at 1777.546 kb on + strand, within MPMX20_01678at 1777.546 kb on + strand, within MPMX20_01678at 1777.597 kb on + strand, within MPMX20_01678at 1777.604 kb on + strand, within MPMX20_01678at 1777.604 kb on + strand, within MPMX20_01678at 1777.675 kb on + strand, within MPMX20_01678at 1777.704 kb on + strand, within MPMX20_01678at 1777.768 kb on + strand, within MPMX20_01678at 1777.769 kb on + strand, within MPMX20_01678at 1777.777 kb on - strand, within MPMX20_01678at 1777.779 kb on + strand, within MPMX20_01678at 1777.782 kb on + strand, within MPMX20_01678at 1777.790 kb on - strand, within MPMX20_01678at 1777.840 kb on - strand, within MPMX20_01678at 1777.840 kb on - strand, within MPMX20_01678at 1777.855 kb on + strand, within MPMX20_01678at 1777.864 kb on + strand, within MPMX20_01678at 1777.865 kb on + strand, within MPMX20_01678at 1777.865 kb on + strand, within MPMX20_01678at 1777.865 kb on + strand, within MPMX20_01678at 1777.865 kb on + strand, within MPMX20_01678at 1777.872 kb on + strand, within MPMX20_01678at 1777.872 kb on + strand, within MPMX20_01678at 1777.872 kb on + strand, within MPMX20_01678at 1777.872 kb on + strand, within MPMX20_01678at 1777.872 kb on + strand, within MPMX20_01678at 1777.872 kb on + strand, within MPMX20_01678at 1777.873 kb on - strand, within MPMX20_01678at 1777.873 kb on - strand, within MPMX20_01678at 1777.873 kb on - strand, within MPMX20_01678at 1777.873 kb on - strand, within MPMX20_01678at 1777.879 kb on - strand, within MPMX20_01678at 1777.880 kb on - strand, within MPMX20_01678at 1777.880 kb on - strand, within MPMX20_01678at 1777.880 kb on - strand, within MPMX20_01678at 1777.880 kb on - strand, within MPMX20_01678at 1777.880 kb on - strand, within MPMX20_01678at 1777.880 kb on - strand, within MPMX20_01678at 1777.880 kb on - strand, within MPMX20_01678at 1777.882 kb on + strand, within MPMX20_01678at 1777.915 kb on + strand, within MPMX20_01678at 1777.915 kb on + strand, within MPMX20_01678at 1777.915 kb on + strand, within MPMX20_01678at 1777.930 kb on + strand, within MPMX20_01678at 1777.930 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.942 kb on + strand, within MPMX20_01678at 1777.947 kb on + strand, within MPMX20_01678at 1777.947 kb on + strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.950 kb on - strand, within MPMX20_01678at 1777.952 kb on + strand, within MPMX20_01678at 1777.952 kb on + strand, within MPMX20_01678at 1777.952 kb on + strand, within MPMX20_01678at 1777.952 kb on + strand, within MPMX20_01678at 1777.952 kb on + strand, within MPMX20_01678at 1777.958 kb on + strand, within MPMX20_01678at 1777.961 kb on - strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.980 kb on + strand, within MPMX20_01678at 1777.988 kb on - strand, within MPMX20_01678

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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1,775,151 + MPMX20_01676 0.25 -0.7
1,775,159 - MPMX20_01676 0.26 -1.1
1,775,175 + MPMX20_01676 0.27 -2.5
1,775,183 - MPMX20_01676 0.28 -0.7
1,775,183 - MPMX20_01676 0.28 -0.2
1,775,240 + MPMX20_01676 0.32 -0.6
1,775,240 - MPMX20_01676 0.32 -1.3
1,775,247 - MPMX20_01676 0.33 -0.9
1,775,254 - MPMX20_01676 0.33 +0.8
1,775,304 - MPMX20_01676 0.37 +2.0
1,775,312 + MPMX20_01676 0.38 +1.4
1,775,318 + MPMX20_01676 0.38 -0.2
1,775,336 + MPMX20_01676 0.39 +0.2
1,775,368 - MPMX20_01676 0.42 -2.1
1,775,411 + MPMX20_01676 0.45 +1.0
1,775,436 + MPMX20_01676 0.47 -0.9
1,775,438 + MPMX20_01676 0.47 -0.1
1,775,444 - MPMX20_01676 0.48 -2.3
1,775,444 - MPMX20_01676 0.48 +0.7
1,775,444 - MPMX20_01676 0.48 +0.2
1,775,444 - MPMX20_01676 0.48 +0.7
1,775,448 + MPMX20_01676 0.48 -2.2
1,775,448 + MPMX20_01676 0.48 +0.2
1,775,456 - MPMX20_01676 0.49 -0.1
1,775,466 + MPMX20_01676 0.49 +0.5
1,775,471 - MPMX20_01676 0.50 +0.1
1,775,484 + MPMX20_01676 0.51 +0.1
1,775,490 - MPMX20_01676 0.51 +0.3
1,775,591 - MPMX20_01676 0.59 -0.7
1,775,606 - MPMX20_01676 0.60 +0.3
1,775,693 - MPMX20_01676 0.67 +1.3
1,775,737 - MPMX20_01676 0.70 -0.7
1,775,753 - MPMX20_01676 0.71 +1.6
1,775,781 + MPMX20_01676 0.73 -0.5
1,775,802 - MPMX20_01676 0.75 -1.6
1,775,831 + MPMX20_01676 0.77 +0.3
1,775,831 + MPMX20_01676 0.77 -2.6
1,775,850 + MPMX20_01676 0.79 -0.6
1,775,858 + MPMX20_01676 0.79 -1.1
1,775,866 - MPMX20_01676 0.80 +0.2
1,775,895 - MPMX20_01676 0.82 +0.3
1,775,912 + MPMX20_01676 0.84 -0.4
1,775,933 - MPMX20_01676 0.85 +0.2
1,775,933 - MPMX20_01676 0.85 -2.6
1,775,959 - MPMX20_01676 0.87 +1.1
1,776,016 + -0.8
1,776,041 + -0.5
1,776,046 - -0.8
1,776,120 + -0.2
1,776,121 + -0.9
1,776,129 - -0.4
1,776,154 + -2.4
1,776,154 + -0.6
1,776,162 - +0.1
1,776,162 - -1.0
1,776,188 + +2.2
1,776,283 + MPMX20_01677 0.17 +1.5
1,776,317 + MPMX20_01677 0.21 -1.5
1,776,325 - MPMX20_01677 0.22 -2.3
1,776,325 - MPMX20_01677 0.22 -0.3
1,776,413 - MPMX20_01677 0.32 +0.1
1,776,413 - MPMX20_01677 0.32 -1.0
1,776,429 + MPMX20_01677 0.34 -0.9
1,776,429 + MPMX20_01677 0.34 +1.6
1,776,429 + MPMX20_01677 0.34 +0.8
1,776,554 - MPMX20_01677 0.49 +0.7
1,776,678 + MPMX20_01677 0.63 +0.7
1,776,755 + MPMX20_01677 0.72 -0.0
1,776,819 - MPMX20_01677 0.80 +1.8
1,776,824 + MPMX20_01677 0.81 -0.9
1,776,908 - -0.7
1,776,963 - -1.1
1,776,983 + +1.6
1,776,984 - +1.0
1,777,000 + +0.9
1,777,066 - +0.0
1,777,068 + +1.8
1,777,076 - +0.9
1,777,076 - -2.2
1,777,125 + MPMX20_01678 0.11 -0.2
1,777,125 + MPMX20_01678 0.11 +0.7
1,777,133 - MPMX20_01678 0.12 +0.8
1,777,133 - MPMX20_01678 0.12 -1.1
1,777,135 + MPMX20_01678 0.12 +0.2
1,777,135 + MPMX20_01678 0.12 -2.4
1,777,135 + MPMX20_01678 0.12 +2.1
1,777,135 + MPMX20_01678 0.12 -0.7
1,777,143 - MPMX20_01678 0.13 +0.2
1,777,143 - MPMX20_01678 0.13 +0.6
1,777,143 - MPMX20_01678 0.13 +0.5
1,777,145 + MPMX20_01678 0.13 +0.3
1,777,148 - MPMX20_01678 0.13 -3.0
1,777,217 + MPMX20_01678 0.19 +0.9
1,777,227 + MPMX20_01678 0.20 -1.5
1,777,407 - MPMX20_01678 0.34 -0.5
1,777,438 + MPMX20_01678 0.37 -0.0
1,777,476 - MPMX20_01678 0.40 +1.7
1,777,481 - MPMX20_01678 0.41 -0.5
1,777,546 + MPMX20_01678 0.46 -1.1
1,777,546 + MPMX20_01678 0.46 -0.2
1,777,597 + MPMX20_01678 0.50 +0.7
1,777,604 + MPMX20_01678 0.51 +0.4
1,777,604 + MPMX20_01678 0.51 -0.0
1,777,675 + MPMX20_01678 0.57 +1.2
1,777,704 + MPMX20_01678 0.59 +1.0
1,777,768 + MPMX20_01678 0.65 +0.2
1,777,769 + MPMX20_01678 0.65 +0.9
1,777,777 - MPMX20_01678 0.65 +0.2
1,777,779 + MPMX20_01678 0.65 +0.7
1,777,782 + MPMX20_01678 0.66 -0.0
1,777,790 - MPMX20_01678 0.66 -0.4
1,777,840 - MPMX20_01678 0.70 -0.8
1,777,840 - MPMX20_01678 0.70 -0.5
1,777,855 + MPMX20_01678 0.72 -0.2
1,777,864 + MPMX20_01678 0.72 +0.2
1,777,865 + MPMX20_01678 0.73 +0.2
1,777,865 + MPMX20_01678 0.73 -2.2
1,777,865 + MPMX20_01678 0.73 -2.2
1,777,865 + MPMX20_01678 0.73 -1.0
1,777,872 + MPMX20_01678 0.73 -0.5
1,777,872 + MPMX20_01678 0.73 -0.0
1,777,872 + MPMX20_01678 0.73 +1.0
1,777,872 + MPMX20_01678 0.73 +0.4
1,777,872 + MPMX20_01678 0.73 -0.0
1,777,872 + MPMX20_01678 0.73 +2.4
1,777,873 - MPMX20_01678 0.73 -0.3
1,777,873 - MPMX20_01678 0.73 -1.4
1,777,873 - MPMX20_01678 0.73 -1.3
1,777,873 - MPMX20_01678 0.73 -1.2
1,777,879 - MPMX20_01678 0.74 -3.8
1,777,880 - MPMX20_01678 0.74 -2.3
1,777,880 - MPMX20_01678 0.74 -1.0
1,777,880 - MPMX20_01678 0.74 -0.6
1,777,880 - MPMX20_01678 0.74 -2.6
1,777,880 - MPMX20_01678 0.74 -1.1
1,777,880 - MPMX20_01678 0.74 -0.5
1,777,880 - MPMX20_01678 0.74 -2.2
1,777,882 + MPMX20_01678 0.74 -2.4
1,777,915 + MPMX20_01678 0.77 +0.2
1,777,915 + MPMX20_01678 0.77 -1.6
1,777,915 + MPMX20_01678 0.77 -0.5
1,777,930 + MPMX20_01678 0.78 -0.8
1,777,930 + MPMX20_01678 0.78 +0.7
1,777,942 + MPMX20_01678 0.79 -1.1
1,777,942 + MPMX20_01678 0.79 +0.6
1,777,942 + MPMX20_01678 0.79 -0.1
1,777,942 + MPMX20_01678 0.79 -1.3
1,777,942 + MPMX20_01678 0.79 -0.3
1,777,942 + MPMX20_01678 0.79 +0.3
1,777,942 + MPMX20_01678 0.79 +1.8
1,777,942 + MPMX20_01678 0.79 +2.2
1,777,942 + MPMX20_01678 0.79 +0.8
1,777,942 + MPMX20_01678 0.79 +0.3
1,777,942 + MPMX20_01678 0.79 -0.9
1,777,942 + MPMX20_01678 0.79 -0.7
1,777,942 + MPMX20_01678 0.79 -1.1
1,777,942 + MPMX20_01678 0.79 -0.8
1,777,942 + MPMX20_01678 0.79 +1.6
1,777,942 + MPMX20_01678 0.79 -1.0
1,777,942 + MPMX20_01678 0.79 -0.8
1,777,942 + MPMX20_01678 0.79 -1.0
1,777,942 + MPMX20_01678 0.79 +0.0
1,777,942 + MPMX20_01678 0.79 +1.0
1,777,942 + MPMX20_01678 0.79 -2.0
1,777,942 + MPMX20_01678 0.79 -0.7
1,777,942 + MPMX20_01678 0.79 -0.2
1,777,942 + MPMX20_01678 0.79 +1.0
1,777,942 + MPMX20_01678 0.79 +1.2
1,777,942 + MPMX20_01678 0.79 -1.5
1,777,942 + MPMX20_01678 0.79 +1.0
1,777,942 + MPMX20_01678 0.79 -1.4
1,777,947 + MPMX20_01678 0.79 -0.2
1,777,947 + MPMX20_01678 0.79 -1.5
1,777,950 - MPMX20_01678 0.80 -1.9
1,777,950 - MPMX20_01678 0.80 -1.5
1,777,950 - MPMX20_01678 0.80 -0.7
1,777,950 - MPMX20_01678 0.80 -0.2
1,777,950 - MPMX20_01678 0.80 -1.5
1,777,950 - MPMX20_01678 0.80 -0.5
1,777,950 - MPMX20_01678 0.80 +0.0
1,777,950 - MPMX20_01678 0.80 -0.8
1,777,952 + MPMX20_01678 0.80 +0.4
1,777,952 + MPMX20_01678 0.80 -2.8
1,777,952 + MPMX20_01678 0.80 +2.2
1,777,952 + MPMX20_01678 0.80 -0.2
1,777,952 + MPMX20_01678 0.80 -1.8
1,777,958 + MPMX20_01678 0.80 -0.4
1,777,961 - MPMX20_01678 0.81 -2.6
1,777,980 + MPMX20_01678 0.82 -0.2
1,777,980 + MPMX20_01678 0.82 -0.3
1,777,980 + MPMX20_01678 0.82 -1.1
1,777,980 + MPMX20_01678 0.82 -1.4
1,777,980 + MPMX20_01678 0.82 +0.1
1,777,980 + MPMX20_01678 0.82 -2.3
1,777,980 + MPMX20_01678 0.82 +1.2
1,777,980 + MPMX20_01678 0.82 -1.3
1,777,988 - MPMX20_01678 0.83 -2.2

Or see this region's nucleotide sequence