Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01637

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01635 and MPMX20_01636 overlap by 14 nucleotidesMPMX20_01636 and MPMX20_01637 are separated by 6 nucleotidesMPMX20_01637 and MPMX20_01638 are separated by 480 nucleotides MPMX20_01635: MPMX20_01635 - hypothetical protein, at 1,728,154 to 1,730,853 _01635 MPMX20_01636: MPMX20_01636 - hypothetical protein, at 1,730,840 to 1,731,700 _01636 MPMX20_01637: MPMX20_01637 - hypothetical protein, at 1,731,707 to 1,732,579 _01637 MPMX20_01638: MPMX20_01638 - hypothetical protein, at 1,733,060 to 1,733,536 _01638 Position (kb) 1731 1732 1733Strain fitness (log2 ratio) -3 -2 -1 0 1at 1731.763 kb on - strandat 1731.773 kb on - strandat 1731.780 kb on - strandat 1731.780 kb on - strandat 1731.909 kb on - strand, within MPMX20_01637at 1731.909 kb on - strand, within MPMX20_01637at 1731.911 kb on - strand, within MPMX20_01637at 1731.915 kb on + strand, within MPMX20_01637at 1731.915 kb on + strand, within MPMX20_01637at 1731.923 kb on - strand, within MPMX20_01637at 1731.962 kb on + strand, within MPMX20_01637at 1731.976 kb on + strand, within MPMX20_01637at 1731.983 kb on + strand, within MPMX20_01637at 1731.994 kb on + strand, within MPMX20_01637at 1732.001 kb on + strand, within MPMX20_01637at 1732.034 kb on + strand, within MPMX20_01637at 1732.100 kb on + strand, within MPMX20_01637at 1732.100 kb on + strand, within MPMX20_01637at 1732.100 kb on + strand, within MPMX20_01637at 1732.100 kb on + strand, within MPMX20_01637at 1732.100 kb on + strand, within MPMX20_01637at 1732.100 kb on + strand, within MPMX20_01637at 1732.100 kb on + strand, within MPMX20_01637at 1732.101 kb on + strand, within MPMX20_01637at 1732.101 kb on + strand, within MPMX20_01637at 1732.106 kb on + strand, within MPMX20_01637at 1732.108 kb on - strand, within MPMX20_01637at 1732.112 kb on + strand, within MPMX20_01637at 1732.112 kb on + strand, within MPMX20_01637at 1732.112 kb on + strand, within MPMX20_01637at 1732.112 kb on + strand, within MPMX20_01637at 1732.112 kb on + strand, within MPMX20_01637at 1732.112 kb on + strand, within MPMX20_01637at 1732.119 kb on + strand, within MPMX20_01637at 1732.124 kb on + strand, within MPMX20_01637at 1732.151 kb on + strand, within MPMX20_01637at 1732.264 kb on + strand, within MPMX20_01637

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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1,731,763 - -0.3
1,731,773 - +0.6
1,731,780 - -0.2
1,731,780 - -1.0
1,731,909 - MPMX20_01637 0.23 -1.7
1,731,909 - MPMX20_01637 0.23 +0.1
1,731,911 - MPMX20_01637 0.23 -1.3
1,731,915 + MPMX20_01637 0.24 +0.3
1,731,915 + MPMX20_01637 0.24 -0.5
1,731,923 - MPMX20_01637 0.25 -3.0
1,731,962 + MPMX20_01637 0.29 +1.6
1,731,976 + MPMX20_01637 0.31 -1.0
1,731,983 + MPMX20_01637 0.32 -1.7
1,731,994 + MPMX20_01637 0.33 -2.6
1,732,001 + MPMX20_01637 0.34 -2.0
1,732,034 + MPMX20_01637 0.37 -0.5
1,732,100 + MPMX20_01637 0.45 -1.5
1,732,100 + MPMX20_01637 0.45 -0.7
1,732,100 + MPMX20_01637 0.45 -0.5
1,732,100 + MPMX20_01637 0.45 -1.9
1,732,100 + MPMX20_01637 0.45 -1.7
1,732,100 + MPMX20_01637 0.45 -1.9
1,732,100 + MPMX20_01637 0.45 -0.7
1,732,101 + MPMX20_01637 0.45 -0.2
1,732,101 + MPMX20_01637 0.45 -0.5
1,732,106 + MPMX20_01637 0.46 -1.5
1,732,108 - MPMX20_01637 0.46 -0.3
1,732,112 + MPMX20_01637 0.46 -1.6
1,732,112 + MPMX20_01637 0.46 -0.7
1,732,112 + MPMX20_01637 0.46 -1.9
1,732,112 + MPMX20_01637 0.46 +0.8
1,732,112 + MPMX20_01637 0.46 -2.1
1,732,112 + MPMX20_01637 0.46 -0.2
1,732,119 + MPMX20_01637 0.47 -2.6
1,732,124 + MPMX20_01637 0.48 +0.8
1,732,151 + MPMX20_01637 0.51 -1.5
1,732,264 + MPMX20_01637 0.64 -0.8

Or see this region's nucleotide sequence