Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00908

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00906 and MPMX20_00907 are separated by 2 nucleotidesMPMX20_00907 and MPMX20_00908 are separated by 9 nucleotidesMPMX20_00908 and MPMX20_00909 are separated by 41 nucleotidesMPMX20_00909 and MPMX20_00910 are separated by 108 nucleotides MPMX20_00906: MPMX20_00906 - Glutathione transport system permease protein GsiC, at 953,670 to 954,611 _00906 MPMX20_00907: MPMX20_00907 - Glutathione transport system permease protein GsiD, at 954,614 to 955,489 _00907 MPMX20_00908: MPMX20_00908 - Glutathione hydrolase-like YwrD proenzyme, at 955,499 to 957,100 _00908 MPMX20_00909: MPMX20_00909 - Omega-amidase YafV, at 957,142 to 957,912 _00909 MPMX20_00910: MPMX20_00910 - Acyl-coenzyme A dehydrogenase, at 958,021 to 960,465 _00910 Position (kb) 955 956 957 958Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 954.520 kb on - strandat 954.525 kb on + strandat 954.533 kb on - strandat 954.613 kb on - strandat 954.637 kb on - strandat 954.647 kb on + strandat 954.647 kb on + strandat 954.655 kb on - strandat 954.655 kb on - strandat 954.655 kb on - strandat 954.655 kb on - strandat 954.711 kb on + strand, within MPMX20_00907at 954.900 kb on - strand, within MPMX20_00907at 954.973 kb on + strand, within MPMX20_00907at 955.010 kb on + strand, within MPMX20_00907at 955.018 kb on - strand, within MPMX20_00907at 955.067 kb on + strand, within MPMX20_00907at 955.075 kb on - strand, within MPMX20_00907at 955.075 kb on - strand, within MPMX20_00907at 955.075 kb on - strand, within MPMX20_00907at 955.089 kb on + strand, within MPMX20_00907at 955.097 kb on - strand, within MPMX20_00907at 955.168 kb on - strand, within MPMX20_00907at 955.220 kb on + strand, within MPMX20_00907at 955.223 kb on - strand, within MPMX20_00907at 955.294 kb on - strand, within MPMX20_00907at 955.351 kb on + strand, within MPMX20_00907at 955.351 kb on + strand, within MPMX20_00907at 955.357 kb on - strand, within MPMX20_00907at 955.382 kb on + strand, within MPMX20_00907at 955.434 kb on + strandat 955.558 kb on + strandat 955.592 kb on + strandat 955.669 kb on - strand, within MPMX20_00908at 955.672 kb on + strand, within MPMX20_00908at 955.830 kb on + strand, within MPMX20_00908at 955.838 kb on - strand, within MPMX20_00908at 955.980 kb on + strand, within MPMX20_00908at 955.987 kb on - strand, within MPMX20_00908at 955.988 kb on - strand, within MPMX20_00908at 956.040 kb on + strand, within MPMX20_00908at 956.067 kb on + strand, within MPMX20_00908at 956.191 kb on + strand, within MPMX20_00908at 956.217 kb on + strand, within MPMX20_00908at 956.217 kb on + strand, within MPMX20_00908at 956.217 kb on + strand, within MPMX20_00908at 956.220 kb on - strand, within MPMX20_00908at 956.225 kb on - strand, within MPMX20_00908at 956.225 kb on - strand, within MPMX20_00908at 956.250 kb on + strand, within MPMX20_00908at 956.296 kb on + strand, within MPMX20_00908at 956.310 kb on + strand, within MPMX20_00908at 956.313 kb on - strand, within MPMX20_00908at 956.318 kb on - strand, within MPMX20_00908at 956.318 kb on - strand, within MPMX20_00908at 956.385 kb on + strand, within MPMX20_00908at 956.437 kb on - strand, within MPMX20_00908at 956.444 kb on + strand, within MPMX20_00908at 956.452 kb on - strand, within MPMX20_00908at 956.495 kb on + strand, within MPMX20_00908at 956.542 kb on - strand, within MPMX20_00908at 956.557 kb on - strand, within MPMX20_00908at 956.570 kb on - strand, within MPMX20_00908at 956.589 kb on + strand, within MPMX20_00908at 956.589 kb on + strand, within MPMX20_00908at 956.589 kb on + strand, within MPMX20_00908at 956.589 kb on + strand, within MPMX20_00908at 956.589 kb on + strand, within MPMX20_00908at 956.589 kb on + strand, within MPMX20_00908at 956.597 kb on - strand, within MPMX20_00908at 956.597 kb on - strand, within MPMX20_00908at 956.897 kb on + strand, within MPMX20_00908at 956.897 kb on + strand, within MPMX20_00908at 956.897 kb on + strand, within MPMX20_00908at 956.905 kb on - strand, within MPMX20_00908at 956.905 kb on - strand, within MPMX20_00908at 956.910 kb on - strand, within MPMX20_00908at 956.977 kb on - strandat 957.044 kb on + strandat 957.112 kb on + strandat 957.112 kb on + strandat 957.112 kb on + strandat 957.120 kb on - strandat 957.120 kb on - strandat 957.120 kb on - strandat 957.120 kb on - strandat 957.139 kb on + strandat 957.152 kb on - strandat 957.173 kb on - strandat 957.293 kb on - strand, within MPMX20_00909at 957.419 kb on - strand, within MPMX20_00909at 957.425 kb on + strand, within MPMX20_00909at 957.433 kb on - strand, within MPMX20_00909at 957.512 kb on - strand, within MPMX20_00909at 957.821 kb on - strand, within MPMX20_00909at 957.857 kb on - strandat 957.871 kb on + strandat 957.906 kb on - strandat 957.931 kb on - strandat 957.946 kb on + strandat 957.954 kb on - strandat 958.056 kb on + strandat 958.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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954,520 - +2.4
954,525 + -2.0
954,533 - +0.2
954,613 - -1.7
954,637 - -1.4
954,647 + -2.0
954,647 + +0.8
954,655 - +0.0
954,655 - +0.4
954,655 - +0.9
954,655 - -0.8
954,711 + MPMX20_00907 0.11 -1.3
954,900 - MPMX20_00907 0.33 -0.1
954,973 + MPMX20_00907 0.41 +0.8
955,010 + MPMX20_00907 0.45 +0.8
955,018 - MPMX20_00907 0.46 -0.8
955,067 + MPMX20_00907 0.52 -1.0
955,075 - MPMX20_00907 0.53 +0.1
955,075 - MPMX20_00907 0.53 +0.7
955,075 - MPMX20_00907 0.53 +0.8
955,089 + MPMX20_00907 0.54 -0.2
955,097 - MPMX20_00907 0.55 +0.5
955,168 - MPMX20_00907 0.63 +2.1
955,220 + MPMX20_00907 0.69 +2.7
955,223 - MPMX20_00907 0.70 +0.5
955,294 - MPMX20_00907 0.78 -1.0
955,351 + MPMX20_00907 0.84 -0.6
955,351 + MPMX20_00907 0.84 +1.0
955,357 - MPMX20_00907 0.85 -0.0
955,382 + MPMX20_00907 0.88 +1.0
955,434 + -0.3
955,558 + -2.1
955,592 + -1.6
955,669 - MPMX20_00908 0.11 +0.2
955,672 + MPMX20_00908 0.11 -1.7
955,830 + MPMX20_00908 0.21 +0.4
955,838 - MPMX20_00908 0.21 +1.0
955,980 + MPMX20_00908 0.30 -0.9
955,987 - MPMX20_00908 0.30 +1.1
955,988 - MPMX20_00908 0.31 +0.4
956,040 + MPMX20_00908 0.34 +2.3
956,067 + MPMX20_00908 0.35 -3.2
956,191 + MPMX20_00908 0.43 -2.5
956,217 + MPMX20_00908 0.45 +0.0
956,217 + MPMX20_00908 0.45 -3.0
956,217 + MPMX20_00908 0.45 -1.4
956,220 - MPMX20_00908 0.45 +2.6
956,225 - MPMX20_00908 0.45 -1.9
956,225 - MPMX20_00908 0.45 -1.9
956,250 + MPMX20_00908 0.47 -2.2
956,296 + MPMX20_00908 0.50 -1.4
956,310 + MPMX20_00908 0.51 +2.0
956,313 - MPMX20_00908 0.51 -0.3
956,318 - MPMX20_00908 0.51 -3.8
956,318 - MPMX20_00908 0.51 -0.8
956,385 + MPMX20_00908 0.55 -1.2
956,437 - MPMX20_00908 0.59 -2.6
956,444 + MPMX20_00908 0.59 -2.7
956,452 - MPMX20_00908 0.59 -1.8
956,495 + MPMX20_00908 0.62 -0.9
956,542 - MPMX20_00908 0.65 +0.4
956,557 - MPMX20_00908 0.66 +0.1
956,570 - MPMX20_00908 0.67 -1.3
956,589 + MPMX20_00908 0.68 -2.6
956,589 + MPMX20_00908 0.68 -2.6
956,589 + MPMX20_00908 0.68 -0.8
956,589 + MPMX20_00908 0.68 +2.6
956,589 + MPMX20_00908 0.68 +0.4
956,589 + MPMX20_00908 0.68 +0.2
956,597 - MPMX20_00908 0.69 -3.0
956,597 - MPMX20_00908 0.69 -0.9
956,897 + MPMX20_00908 0.87 -2.1
956,897 + MPMX20_00908 0.87 -2.9
956,897 + MPMX20_00908 0.87 -0.5
956,905 - MPMX20_00908 0.88 -0.5
956,905 - MPMX20_00908 0.88 -1.8
956,910 - MPMX20_00908 0.88 +0.5
956,977 - -2.8
957,044 + -1.3
957,112 + -0.4
957,112 + +1.2
957,112 + +4.2
957,120 - +0.8
957,120 - +0.7
957,120 - -1.3
957,120 - -1.7
957,139 + -0.3
957,152 - +0.8
957,173 - +0.2
957,293 - MPMX20_00909 0.20 -0.9
957,419 - MPMX20_00909 0.36 +1.2
957,425 + MPMX20_00909 0.37 -0.3
957,433 - MPMX20_00909 0.38 -1.1
957,512 - MPMX20_00909 0.48 +0.5
957,821 - MPMX20_00909 0.88 +0.6
957,857 - +2.0
957,871 + -0.0
957,906 - +0.3
957,931 - +0.4
957,946 + -1.5
957,954 - -0.0
958,056 + -0.2
958,070 + -0.3

Or see this region's nucleotide sequence