Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00826 and MPMX20_00827 are separated by 11 nucleotides MPMX20_00827 and MPMX20_00828 are separated by 122 nucleotides MPMX20_00828 and MPMX20_00829 overlap by 4 nucleotides
MPMX20_00826: MPMX20_00826 - Pantothenate synthetase, at 868,488 to 869,339
_00826
MPMX20_00827: MPMX20_00827 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 869,351 to 870,142
_00827
MPMX20_00828: MPMX20_00828 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase, at 870,265 to 870,744
_00828
MPMX20_00829: MPMX20_00829 - Poly(A) polymerase I, at 870,741 to 872,084
_00829
Position (kb) 870
871 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 869.339 kb on - strand at 869.390 kb on - strand at 869.400 kb on + strand at 869.408 kb on + strand at 869.408 kb on - strand at 869.421 kb on + strand at 869.513 kb on - strand, within MPMX20_00827 at 869.521 kb on + strand, within MPMX20_00827 at 869.563 kb on + strand, within MPMX20_00827 at 869.596 kb on + strand, within MPMX20_00827 at 869.684 kb on - strand, within MPMX20_00827 at 869.689 kb on + strand, within MPMX20_00827 at 869.697 kb on - strand, within MPMX20_00827 at 869.729 kb on + strand, within MPMX20_00827 at 869.742 kb on - strand, within MPMX20_00827 at 869.858 kb on - strand, within MPMX20_00827 at 869.917 kb on - strand, within MPMX20_00827 at 870.027 kb on + strand, within MPMX20_00827 at 870.027 kb on - strand, within MPMX20_00827 at 870.027 kb on - strand, within MPMX20_00827 at 870.027 kb on - strand, within MPMX20_00827 at 870.027 kb on - strand, within MPMX20_00827 at 870.033 kb on - strand, within MPMX20_00827 at 870.035 kb on - strand, within MPMX20_00827 at 870.035 kb on - strand, within MPMX20_00827 at 870.067 kb on - strand at 870.067 kb on - strand at 870.081 kb on - strand at 870.093 kb on + strand at 870.130 kb on - strand at 870.192 kb on + strand at 870.200 kb on - strand at 870.250 kb on - strand at 870.250 kb on - strand at 870.866 kb on + strand at 870.941 kb on - strand, within MPMX20_00829 at 870.941 kb on - strand, within MPMX20_00829 at 870.968 kb on + strand, within MPMX20_00829 at 871.114 kb on + strand, within MPMX20_00829 at 871.153 kb on + strand, within MPMX20_00829 at 871.247 kb on - strand, within MPMX20_00829 at 871.354 kb on - strand, within MPMX20_00829 at 871.372 kb on + strand, within MPMX20_00829 at 871.383 kb on + strand, within MPMX20_00829 at 871.420 kb on + strand, within MPMX20_00829 at 871.428 kb on - strand, within MPMX20_00829 at 871.428 kb on - strand, within MPMX20_00829 at 871.428 kb on - strand, within MPMX20_00829 at 871.428 kb on - strand, within MPMX20_00829 at 871.557 kb on - strand, within MPMX20_00829 at 871.672 kb on - strand, within MPMX20_00829 at 871.732 kb on - strand, within MPMX20_00829
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 869,339 - -2.1 869,390 - -0.5 869,400 + +0.0 869,408 + -0.3 869,408 - -1.1 869,421 + +0.5 869,513 - MPMX20_00827 0.20 -2.3 869,521 + MPMX20_00827 0.21 -0.7 869,563 + MPMX20_00827 0.27 -3.5 869,596 + MPMX20_00827 0.31 -1.5 869,684 - MPMX20_00827 0.42 -4.3 869,689 + MPMX20_00827 0.43 +1.6 869,697 - MPMX20_00827 0.44 +1.8 869,729 + MPMX20_00827 0.48 -1.7 869,742 - MPMX20_00827 0.49 -0.6 869,858 - MPMX20_00827 0.64 +0.1 869,917 - MPMX20_00827 0.71 +1.2 870,027 + MPMX20_00827 0.85 -3.0 870,027 - MPMX20_00827 0.85 -1.2 870,027 - MPMX20_00827 0.85 -1.4 870,027 - MPMX20_00827 0.85 +1.1 870,027 - MPMX20_00827 0.85 -1.4 870,033 - MPMX20_00827 0.86 +0.3 870,035 - MPMX20_00827 0.86 -0.6 870,035 - MPMX20_00827 0.86 -0.3 870,067 - +0.3 870,067 - -1.3 870,081 - -1.7 870,093 + -0.1 870,130 - +0.3 870,192 + -0.2 870,200 - +0.8 870,250 - -0.1 870,250 - +2.8 870,866 + -2.6 870,941 - MPMX20_00829 0.15 -1.2 870,941 - MPMX20_00829 0.15 -0.4 870,968 + MPMX20_00829 0.17 -1.9 871,114 + MPMX20_00829 0.28 +1.1 871,153 + MPMX20_00829 0.31 +3.9 871,247 - MPMX20_00829 0.38 -0.5 871,354 - MPMX20_00829 0.46 +2.1 871,372 + MPMX20_00829 0.47 +0.5 871,383 + MPMX20_00829 0.48 -3.7 871,420 + MPMX20_00829 0.51 -2.3 871,428 - MPMX20_00829 0.51 +3.3 871,428 - MPMX20_00829 0.51 +0.8 871,428 - MPMX20_00829 0.51 +1.8 871,428 - MPMX20_00829 0.51 +1.7 871,557 - MPMX20_00829 0.61 +1.3 871,672 - MPMX20_00829 0.69 -0.2 871,732 - MPMX20_00829 0.74 -0.1
Or see this region's nucleotide sequence