Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00806 and MPMX20_00807 are separated by 123 nucleotides MPMX20_00807 and MPMX20_00808 are separated by 14 nucleotides
MPMX20_00806: MPMX20_00806 - Pyruvate dehydrogenase complex repressor, at 843,462 to 844,226
_00806
MPMX20_00807: MPMX20_00807 - Pyruvate dehydrogenase E1 component, at 844,350 to 847,013
_00807
MPMX20_00808: MPMX20_00808 - Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, at 847,028 to 848,923
_00808
Position (kb) 844
845
846
847
848 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 843.359 kb on + strand at 843.385 kb on - strand at 843.761 kb on + strand, within MPMX20_00806 at 843.805 kb on - strand, within MPMX20_00806 at 843.812 kb on + strand, within MPMX20_00806 at 843.812 kb on + strand, within MPMX20_00806 at 843.820 kb on - strand, within MPMX20_00806 at 843.822 kb on + strand, within MPMX20_00806 at 843.822 kb on + strand, within MPMX20_00806 at 843.822 kb on + strand, within MPMX20_00806 at 843.859 kb on + strand, within MPMX20_00806 at 843.966 kb on + strand, within MPMX20_00806 at 843.976 kb on + strand, within MPMX20_00806 at 844.022 kb on + strand, within MPMX20_00806 at 844.112 kb on - strand, within MPMX20_00806 at 844.269 kb on + strand at 844.407 kb on - strand at 844.407 kb on - strand at 844.407 kb on - strand at 844.443 kb on - strand at 844.678 kb on + strand, within MPMX20_00807 at 844.773 kb on + strand, within MPMX20_00807 at 844.816 kb on - strand, within MPMX20_00807 at 845.008 kb on + strand, within MPMX20_00807 at 845.008 kb on + strand, within MPMX20_00807 at 845.016 kb on - strand, within MPMX20_00807 at 845.016 kb on - strand, within MPMX20_00807 at 845.208 kb on + strand, within MPMX20_00807 at 845.236 kb on - strand, within MPMX20_00807 at 845.280 kb on - strand, within MPMX20_00807 at 845.343 kb on + strand, within MPMX20_00807 at 845.693 kb on + strand, within MPMX20_00807 at 846.044 kb on - strand, within MPMX20_00807 at 846.044 kb on - strand, within MPMX20_00807 at 846.134 kb on + strand, within MPMX20_00807 at 846.261 kb on + strand, within MPMX20_00807 at 846.294 kb on - strand, within MPMX20_00807 at 846.584 kb on - strand, within MPMX20_00807 at 846.601 kb on - strand, within MPMX20_00807 at 846.607 kb on + strand, within MPMX20_00807 at 846.620 kb on - strand, within MPMX20_00807 at 846.620 kb on - strand, within MPMX20_00807 at 846.620 kb on - strand, within MPMX20_00807 at 846.722 kb on + strand, within MPMX20_00807 at 846.904 kb on - strand at 847.015 kb on - strand at 847.054 kb on + strand at 847.137 kb on - strand at 847.794 kb on + strand, within MPMX20_00808
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 843,359 + +0.7 843,385 - -0.4 843,761 + MPMX20_00806 0.39 -1.7 843,805 - MPMX20_00806 0.45 -0.9 843,812 + MPMX20_00806 0.46 -1.6 843,812 + MPMX20_00806 0.46 -0.5 843,820 - MPMX20_00806 0.47 -1.5 843,822 + MPMX20_00806 0.47 -3.9 843,822 + MPMX20_00806 0.47 +0.9 843,822 + MPMX20_00806 0.47 -2.0 843,859 + MPMX20_00806 0.52 +0.5 843,966 + MPMX20_00806 0.66 -1.4 843,976 + MPMX20_00806 0.67 +0.4 844,022 + MPMX20_00806 0.73 -2.3 844,112 - MPMX20_00806 0.85 -1.1 844,269 + -1.1 844,407 - -1.2 844,407 - -0.4 844,407 - -1.2 844,443 - -0.9 844,678 + MPMX20_00807 0.12 -0.1 844,773 + MPMX20_00807 0.16 +1.9 844,816 - MPMX20_00807 0.17 -0.6 845,008 + MPMX20_00807 0.25 -1.5 845,008 + MPMX20_00807 0.25 +0.9 845,016 - MPMX20_00807 0.25 -0.9 845,016 - MPMX20_00807 0.25 -0.1 845,208 + MPMX20_00807 0.32 -0.4 845,236 - MPMX20_00807 0.33 -0.1 845,280 - MPMX20_00807 0.35 +0.9 845,343 + MPMX20_00807 0.37 -1.9 845,693 + MPMX20_00807 0.50 -0.1 846,044 - MPMX20_00807 0.64 +1.9 846,044 - MPMX20_00807 0.64 +0.9 846,134 + MPMX20_00807 0.67 +0.9 846,261 + MPMX20_00807 0.72 -1.4 846,294 - MPMX20_00807 0.73 +0.9 846,584 - MPMX20_00807 0.84 -1.1 846,601 - MPMX20_00807 0.84 -1.5 846,607 + MPMX20_00807 0.85 +0.9 846,620 - MPMX20_00807 0.85 -0.9 846,620 - MPMX20_00807 0.85 -0.6 846,620 - MPMX20_00807 0.85 +0.4 846,722 + MPMX20_00807 0.89 +0.4 846,904 - -0.1 847,015 - -0.1 847,054 + -2.2 847,137 - -1.2 847,794 + MPMX20_00808 0.40 -0.6
Or see this region's nucleotide sequence