Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00252

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00251 and MPMX20_00252 are separated by 372 nucleotidesMPMX20_00252 and MPMX20_00253 are separated by 42 nucleotides MPMX20_00251: MPMX20_00251 - Maltose/maltodextrin-binding periplasmic protein, at 267,870 to 269,060 _00251 MPMX20_00252: MPMX20_00252 - Maltose/maltodextrin import ATP-binding protein MalK, at 269,433 to 270,542 _00252 MPMX20_00253: MPMX20_00253 - Maltoporin, at 270,585 to 271,895 _00253 Position (kb) 269 270 271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 268.582 kb on + strand, within MPMX20_00251at 268.592 kb on + strand, within MPMX20_00251at 268.600 kb on - strand, within MPMX20_00251at 268.622 kb on + strand, within MPMX20_00251at 268.632 kb on - strand, within MPMX20_00251at 268.697 kb on + strand, within MPMX20_00251at 268.755 kb on - strand, within MPMX20_00251at 268.760 kb on + strand, within MPMX20_00251at 268.763 kb on - strand, within MPMX20_00251at 268.803 kb on + strand, within MPMX20_00251at 268.831 kb on + strand, within MPMX20_00251at 268.929 kb on + strand, within MPMX20_00251at 268.929 kb on + strand, within MPMX20_00251at 268.937 kb on - strand, within MPMX20_00251at 268.937 kb on - strand, within MPMX20_00251at 269.012 kb on - strandat 269.047 kb on + strandat 269.096 kb on + strandat 269.105 kb on - strandat 269.151 kb on + strandat 269.160 kb on - strandat 269.166 kb on - strandat 269.215 kb on - strandat 269.284 kb on - strandat 269.370 kb on + strandat 269.410 kb on + strandat 269.424 kb on + strandat 269.437 kb on - strandat 269.440 kb on + strandat 269.440 kb on + strandat 269.440 kb on + strandat 269.440 kb on + strandat 269.448 kb on - strandat 269.448 kb on - strandat 269.448 kb on - strandat 269.448 kb on - strandat 269.448 kb on - strandat 269.448 kb on - strandat 269.458 kb on - strandat 269.473 kb on - strandat 269.479 kb on - strandat 269.525 kb on - strandat 269.570 kb on - strand, within MPMX20_00252at 269.594 kb on - strand, within MPMX20_00252at 269.619 kb on + strand, within MPMX20_00252at 269.665 kb on + strand, within MPMX20_00252at 269.686 kb on - strand, within MPMX20_00252at 269.692 kb on + strand, within MPMX20_00252at 269.692 kb on + strand, within MPMX20_00252at 269.699 kb on + strand, within MPMX20_00252at 269.700 kb on - strand, within MPMX20_00252at 269.700 kb on - strand, within MPMX20_00252at 269.709 kb on + strand, within MPMX20_00252at 269.773 kb on + strand, within MPMX20_00252at 269.818 kb on - strand, within MPMX20_00252at 269.866 kb on + strand, within MPMX20_00252at 269.874 kb on - strand, within MPMX20_00252at 269.976 kb on + strand, within MPMX20_00252at 270.014 kb on + strand, within MPMX20_00252at 270.022 kb on - strand, within MPMX20_00252at 270.064 kb on + strand, within MPMX20_00252at 270.191 kb on + strand, within MPMX20_00252at 270.192 kb on + strand, within MPMX20_00252at 270.199 kb on - strand, within MPMX20_00252at 270.241 kb on + strand, within MPMX20_00252at 270.332 kb on - strand, within MPMX20_00252at 270.419 kb on + strand, within MPMX20_00252at 270.439 kb on - strandat 270.488 kb on + strandat 270.537 kb on - strandat 270.564 kb on + strandat 270.589 kb on + strandat 270.657 kb on + strandat 270.672 kb on + strandat 270.673 kb on - strandat 270.673 kb on - strandat 270.680 kb on - strandat 270.687 kb on + strandat 270.712 kb on + strandat 270.772 kb on + strand, within MPMX20_00253at 270.841 kb on + strand, within MPMX20_00253at 270.900 kb on - strand, within MPMX20_00253at 270.905 kb on - strand, within MPMX20_00253at 270.907 kb on + strand, within MPMX20_00253at 270.907 kb on + strand, within MPMX20_00253at 270.928 kb on - strand, within MPMX20_00253at 270.983 kb on + strand, within MPMX20_00253at 271.018 kb on + strand, within MPMX20_00253at 271.076 kb on + strand, within MPMX20_00253at 271.113 kb on + strand, within MPMX20_00253at 271.113 kb on + strand, within MPMX20_00253at 271.167 kb on + strand, within MPMX20_00253at 271.225 kb on + strand, within MPMX20_00253at 271.244 kb on - strand, within MPMX20_00253at 271.283 kb on + strand, within MPMX20_00253at 271.291 kb on + strand, within MPMX20_00253at 271.291 kb on - strand, within MPMX20_00253at 271.367 kb on + strand, within MPMX20_00253at 271.402 kb on - strand, within MPMX20_00253at 271.457 kb on + strand, within MPMX20_00253at 271.488 kb on + strand, within MPMX20_00253at 271.535 kb on + strand, within MPMX20_00253at 271.535 kb on + strand, within MPMX20_00253at 271.540 kb on - strand, within MPMX20_00253

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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268,582 + MPMX20_00251 0.60 -3.3
268,592 + MPMX20_00251 0.61 -2.5
268,600 - MPMX20_00251 0.61 -2.3
268,622 + MPMX20_00251 0.63 -0.0
268,632 - MPMX20_00251 0.64 -2.0
268,697 + MPMX20_00251 0.69 +1.5
268,755 - MPMX20_00251 0.74 -4.5
268,760 + MPMX20_00251 0.75 +2.0
268,763 - MPMX20_00251 0.75 -1.0
268,803 + MPMX20_00251 0.78 -3.6
268,831 + MPMX20_00251 0.81 -1.4
268,929 + MPMX20_00251 0.89 -1.6
268,929 + MPMX20_00251 0.89 -0.2
268,937 - MPMX20_00251 0.90 -0.4
268,937 - MPMX20_00251 0.90 -2.1
269,012 - -0.0
269,047 + -0.9
269,096 + -0.6
269,105 - -1.2
269,151 + -1.4
269,160 - -1.6
269,166 - -0.4
269,215 - -2.4
269,284 - -1.7
269,370 + +0.1
269,410 + -0.5
269,424 + +1.5
269,437 - -1.5
269,440 + +0.4
269,440 + +0.4
269,440 + -2.0
269,440 + -1.4
269,448 - +0.4
269,448 - -2.6
269,448 - -3.8
269,448 - -2.7
269,448 - -2.9
269,448 - -1.5
269,458 - -1.6
269,473 - +0.4
269,479 - -1.0
269,525 - -2.2
269,570 - MPMX20_00252 0.12 +0.9
269,594 - MPMX20_00252 0.15 -2.2
269,619 + MPMX20_00252 0.17 -1.7
269,665 + MPMX20_00252 0.21 -0.4
269,686 - MPMX20_00252 0.23 -1.0
269,692 + MPMX20_00252 0.23 -0.4
269,692 + MPMX20_00252 0.23 -1.9
269,699 + MPMX20_00252 0.24 -2.4
269,700 - MPMX20_00252 0.24 -3.4
269,700 - MPMX20_00252 0.24 -1.9
269,709 + MPMX20_00252 0.25 -1.1
269,773 + MPMX20_00252 0.31 -2.8
269,818 - MPMX20_00252 0.35 -2.6
269,866 + MPMX20_00252 0.39 -1.2
269,874 - MPMX20_00252 0.40 -1.4
269,976 + MPMX20_00252 0.49 +2.0
270,014 + MPMX20_00252 0.52 -1.8
270,022 - MPMX20_00252 0.53 -2.8
270,064 + MPMX20_00252 0.57 -2.3
270,191 + MPMX20_00252 0.68 -1.3
270,192 + MPMX20_00252 0.68 -0.6
270,199 - MPMX20_00252 0.69 -3.2
270,241 + MPMX20_00252 0.73 +0.4
270,332 - MPMX20_00252 0.81 -2.5
270,419 + MPMX20_00252 0.89 -1.0
270,439 - -3.2
270,488 + -2.9
270,537 - +0.4
270,564 + -0.4
270,589 + +0.2
270,657 + -3.4
270,672 + -3.0
270,673 - -0.6
270,673 - -1.7
270,680 - -2.9
270,687 + -1.9
270,712 + -0.0
270,772 + MPMX20_00253 0.14 -2.2
270,841 + MPMX20_00253 0.20 -1.6
270,900 - MPMX20_00253 0.24 -2.8
270,905 - MPMX20_00253 0.24 -4.2
270,907 + MPMX20_00253 0.25 -1.0
270,907 + MPMX20_00253 0.25 -1.0
270,928 - MPMX20_00253 0.26 -2.0
270,983 + MPMX20_00253 0.30 -0.6
271,018 + MPMX20_00253 0.33 -2.6
271,076 + MPMX20_00253 0.37 -0.4
271,113 + MPMX20_00253 0.40 -0.3
271,113 + MPMX20_00253 0.40 -3.5
271,167 + MPMX20_00253 0.44 -3.3
271,225 + MPMX20_00253 0.49 +1.0
271,244 - MPMX20_00253 0.50 -0.8
271,283 + MPMX20_00253 0.53 -1.3
271,291 + MPMX20_00253 0.54 -2.7
271,291 - MPMX20_00253 0.54 -0.9
271,367 + MPMX20_00253 0.60 -1.4
271,402 - MPMX20_00253 0.62 -2.4
271,457 + MPMX20_00253 0.67 -2.7
271,488 + MPMX20_00253 0.69 -3.9
271,535 + MPMX20_00253 0.72 -3.9
271,535 + MPMX20_00253 0.72 +1.0
271,540 - MPMX20_00253 0.73 -2.0

Or see this region's nucleotide sequence