Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00192

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00191 and MPMX20_00192 are separated by 9 nucleotidesMPMX20_00192 and MPMX20_00193 are separated by 10 nucleotidesMPMX20_00193 and MPMX20_00194 overlap by 4 nucleotides MPMX20_00191: MPMX20_00191 - Dipeptide transport system permease protein DppB, at 200,147 to 201,166 _00191 MPMX20_00192: MPMX20_00192 - Dipeptide transport system permease protein DppC, at 201,176 to 202,078 _00192 MPMX20_00193: MPMX20_00193 - Dipeptide transport ATP-binding protein DppD, at 202,089 to 203,072 _00193 MPMX20_00194: MPMX20_00194 - Vitamin B12 import ATP-binding protein BtuD, at 203,069 to 204,082 _00194 Position (kb) 201 202 203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 200.177 kb on - strandat 200.299 kb on + strand, within MPMX20_00191at 200.310 kb on + strand, within MPMX20_00191at 200.315 kb on + strand, within MPMX20_00191at 200.318 kb on - strand, within MPMX20_00191at 200.328 kb on - strand, within MPMX20_00191at 200.418 kb on + strand, within MPMX20_00191at 200.485 kb on + strand, within MPMX20_00191at 200.493 kb on - strand, within MPMX20_00191at 200.508 kb on - strand, within MPMX20_00191at 200.563 kb on + strand, within MPMX20_00191at 200.610 kb on - strand, within MPMX20_00191at 200.631 kb on - strand, within MPMX20_00191at 200.725 kb on - strand, within MPMX20_00191at 200.731 kb on + strand, within MPMX20_00191at 200.757 kb on + strand, within MPMX20_00191at 200.784 kb on + strand, within MPMX20_00191at 200.818 kb on - strand, within MPMX20_00191at 200.831 kb on - strand, within MPMX20_00191at 200.869 kb on + strand, within MPMX20_00191at 200.876 kb on + strand, within MPMX20_00191at 200.884 kb on - strand, within MPMX20_00191at 200.901 kb on - strand, within MPMX20_00191at 200.914 kb on + strand, within MPMX20_00191at 200.914 kb on + strand, within MPMX20_00191at 200.914 kb on + strand, within MPMX20_00191at 200.919 kb on + strand, within MPMX20_00191at 200.922 kb on - strand, within MPMX20_00191at 200.956 kb on + strand, within MPMX20_00191at 201.033 kb on + strand, within MPMX20_00191at 201.038 kb on + strand, within MPMX20_00191at 201.046 kb on - strand, within MPMX20_00191at 201.062 kb on + strand, within MPMX20_00191at 201.070 kb on - strandat 201.072 kb on + strandat 201.080 kb on - strandat 201.080 kb on - strandat 201.109 kb on + strandat 201.132 kb on - strandat 201.132 kb on - strandat 201.178 kb on + strandat 201.249 kb on + strandat 201.314 kb on + strand, within MPMX20_00192at 201.337 kb on + strand, within MPMX20_00192at 201.377 kb on + strand, within MPMX20_00192at 201.404 kb on - strand, within MPMX20_00192at 201.451 kb on - strand, within MPMX20_00192at 201.452 kb on + strand, within MPMX20_00192at 201.453 kb on - strand, within MPMX20_00192at 201.460 kb on - strand, within MPMX20_00192at 201.673 kb on + strand, within MPMX20_00192at 201.674 kb on + strand, within MPMX20_00192at 201.674 kb on + strand, within MPMX20_00192at 201.681 kb on - strand, within MPMX20_00192at 201.738 kb on - strand, within MPMX20_00192at 201.748 kb on - strand, within MPMX20_00192at 201.796 kb on - strand, within MPMX20_00192at 201.796 kb on - strand, within MPMX20_00192at 201.825 kb on - strand, within MPMX20_00192at 201.903 kb on - strand, within MPMX20_00192at 201.903 kb on - strand, within MPMX20_00192at 201.917 kb on + strand, within MPMX20_00192at 201.977 kb on + strand, within MPMX20_00192at 201.977 kb on + strand, within MPMX20_00192at 201.977 kb on + strand, within MPMX20_00192at 201.977 kb on + strand, within MPMX20_00192at 201.985 kb on - strand, within MPMX20_00192at 202.025 kb on + strandat 202.143 kb on + strandat 202.174 kb on + strandat 202.182 kb on - strandat 202.184 kb on + strandat 202.288 kb on + strand, within MPMX20_00193at 202.288 kb on + strand, within MPMX20_00193at 202.302 kb on + strand, within MPMX20_00193at 202.311 kb on - strand, within MPMX20_00193at 202.388 kb on - strand, within MPMX20_00193at 202.390 kb on + strand, within MPMX20_00193at 202.390 kb on + strand, within MPMX20_00193at 202.398 kb on - strand, within MPMX20_00193at 202.532 kb on - strand, within MPMX20_00193at 202.566 kb on - strand, within MPMX20_00193at 202.566 kb on - strand, within MPMX20_00193at 202.700 kb on - strand, within MPMX20_00193at 202.723 kb on - strand, within MPMX20_00193at 202.734 kb on - strand, within MPMX20_00193at 202.739 kb on + strand, within MPMX20_00193at 202.776 kb on + strand, within MPMX20_00193at 202.784 kb on - strand, within MPMX20_00193at 202.784 kb on - strand, within MPMX20_00193at 202.839 kb on - strand, within MPMX20_00193at 202.874 kb on + strand, within MPMX20_00193at 202.877 kb on - strand, within MPMX20_00193at 202.877 kb on - strand, within MPMX20_00193at 202.882 kb on - strand, within MPMX20_00193at 202.904 kb on - strand, within MPMX20_00193at 202.929 kb on + strand, within MPMX20_00193at 202.929 kb on + strand, within MPMX20_00193at 202.979 kb on - strandat 202.979 kb on - strandat 202.998 kb on - strandat 203.041 kb on - strandat 203.059 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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200,177 - -2.0
200,299 + MPMX20_00191 0.15 +0.3
200,310 + MPMX20_00191 0.16 -3.1
200,315 + MPMX20_00191 0.16 +0.5
200,318 - MPMX20_00191 0.17 +0.2
200,328 - MPMX20_00191 0.18 -0.0
200,418 + MPMX20_00191 0.27 -0.4
200,485 + MPMX20_00191 0.33 -3.3
200,493 - MPMX20_00191 0.34 +0.7
200,508 - MPMX20_00191 0.35 -1.0
200,563 + MPMX20_00191 0.41 +0.7
200,610 - MPMX20_00191 0.45 -0.3
200,631 - MPMX20_00191 0.47 +0.0
200,725 - MPMX20_00191 0.57 +0.6
200,731 + MPMX20_00191 0.57 -1.2
200,757 + MPMX20_00191 0.60 +0.3
200,784 + MPMX20_00191 0.62 -0.0
200,818 - MPMX20_00191 0.66 +0.3
200,831 - MPMX20_00191 0.67 -1.7
200,869 + MPMX20_00191 0.71 +0.3
200,876 + MPMX20_00191 0.71 +0.0
200,884 - MPMX20_00191 0.72 -1.4
200,901 - MPMX20_00191 0.74 +0.0
200,914 + MPMX20_00191 0.75 +1.0
200,914 + MPMX20_00191 0.75 -0.6
200,914 + MPMX20_00191 0.75 -1.7
200,919 + MPMX20_00191 0.76 -1.0
200,922 - MPMX20_00191 0.76 +0.3
200,956 + MPMX20_00191 0.79 +1.2
201,033 + MPMX20_00191 0.87 +0.6
201,038 + MPMX20_00191 0.87 +1.2
201,046 - MPMX20_00191 0.88 -1.0
201,062 + MPMX20_00191 0.90 +0.2
201,070 - +0.4
201,072 + -1.6
201,080 - -0.4
201,080 - -1.6
201,109 + -0.9
201,132 - +1.5
201,132 - -0.9
201,178 + +0.2
201,249 + +1.3
201,314 + MPMX20_00192 0.15 -1.1
201,337 + MPMX20_00192 0.18 -0.1
201,377 + MPMX20_00192 0.22 +0.7
201,404 - MPMX20_00192 0.25 +1.0
201,451 - MPMX20_00192 0.30 +0.1
201,452 + MPMX20_00192 0.31 -1.2
201,453 - MPMX20_00192 0.31 -1.0
201,460 - MPMX20_00192 0.31 -1.0
201,673 + MPMX20_00192 0.55 +0.4
201,674 + MPMX20_00192 0.55 -1.2
201,674 + MPMX20_00192 0.55 +0.7
201,681 - MPMX20_00192 0.56 +1.5
201,738 - MPMX20_00192 0.62 +1.8
201,748 - MPMX20_00192 0.63 -0.8
201,796 - MPMX20_00192 0.69 -1.4
201,796 - MPMX20_00192 0.69 -0.0
201,825 - MPMX20_00192 0.72 +2.0
201,903 - MPMX20_00192 0.81 +2.0
201,903 - MPMX20_00192 0.81 -1.0
201,917 + MPMX20_00192 0.82 -4.2
201,977 + MPMX20_00192 0.89 -0.7
201,977 + MPMX20_00192 0.89 -1.3
201,977 + MPMX20_00192 0.89 -0.1
201,977 + MPMX20_00192 0.89 +1.0
201,985 - MPMX20_00192 0.90 +0.1
202,025 + -3.0
202,143 + +0.0
202,174 + -4.2
202,182 - -0.6
202,184 + +1.0
202,288 + MPMX20_00193 0.20 -1.2
202,288 + MPMX20_00193 0.20 +1.1
202,302 + MPMX20_00193 0.22 -0.3
202,311 - MPMX20_00193 0.23 -1.4
202,388 - MPMX20_00193 0.30 -2.2
202,390 + MPMX20_00193 0.31 +2.3
202,390 + MPMX20_00193 0.31 -0.6
202,398 - MPMX20_00193 0.31 -1.2
202,532 - MPMX20_00193 0.45 -1.4
202,566 - MPMX20_00193 0.48 -1.2
202,566 - MPMX20_00193 0.48 -0.8
202,700 - MPMX20_00193 0.62 +1.2
202,723 - MPMX20_00193 0.64 -1.5
202,734 - MPMX20_00193 0.66 +0.4
202,739 + MPMX20_00193 0.66 -0.7
202,776 + MPMX20_00193 0.70 +1.4
202,784 - MPMX20_00193 0.71 -0.9
202,784 - MPMX20_00193 0.71 -2.8
202,839 - MPMX20_00193 0.76 +0.0
202,874 + MPMX20_00193 0.80 -0.2
202,877 - MPMX20_00193 0.80 -1.5
202,877 - MPMX20_00193 0.80 +1.1
202,882 - MPMX20_00193 0.81 -0.4
202,904 - MPMX20_00193 0.83 -0.2
202,929 + MPMX20_00193 0.85 -0.3
202,929 + MPMX20_00193 0.85 -0.4
202,979 - -0.6
202,979 - -0.2
202,998 - -0.2
203,041 - +0.9
203,059 + -2.2

Or see this region's nucleotide sequence