Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00133

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00131 and MPMX20_00132 are separated by 285 nucleotidesMPMX20_00132 and MPMX20_00133 are separated by 58 nucleotidesMPMX20_00133 and MPMX20_00134 overlap by 4 nucleotides MPMX20_00131: MPMX20_00131 - L-lactate permease, at 131,783 to 133,438 _00131 MPMX20_00132: MPMX20_00132 - putative protein YibL, at 133,724 to 134,086 _00132 MPMX20_00133: MPMX20_00133 - Mannitol operon repressor, at 134,145 to 134,735 _00133 MPMX20_00134: MPMX20_00134 - Mannitol-1-phosphate 5-dehydrogenase, at 134,732 to 135,880 _00134 Position (kb) 134 135Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 133.204 kb on + strand, within MPMX20_00131at 133.224 kb on + strand, within MPMX20_00131at 133.233 kb on + strand, within MPMX20_00131at 133.241 kb on - strand, within MPMX20_00131at 133.251 kb on - strand, within MPMX20_00131at 133.337 kb on - strandat 133.343 kb on - strandat 133.343 kb on - strandat 133.343 kb on - strandat 133.343 kb on - strandat 133.405 kb on - strandat 133.432 kb on + strandat 133.460 kb on - strandat 133.491 kb on - strandat 133.637 kb on + strandat 133.678 kb on - strandat 133.791 kb on + strand, within MPMX20_00132at 133.870 kb on + strand, within MPMX20_00132at 133.918 kb on - strand, within MPMX20_00132at 134.030 kb on + strand, within MPMX20_00132at 134.043 kb on - strand, within MPMX20_00132at 134.123 kb on + strandat 134.123 kb on + strandat 134.123 kb on + strandat 134.131 kb on - strandat 134.131 kb on - strandat 134.131 kb on - strandat 134.135 kb on - strandat 134.256 kb on - strand, within MPMX20_00133at 134.260 kb on + strand, within MPMX20_00133at 134.260 kb on + strand, within MPMX20_00133at 134.284 kb on + strand, within MPMX20_00133at 134.307 kb on + strand, within MPMX20_00133at 134.315 kb on - strand, within MPMX20_00133at 134.331 kb on + strand, within MPMX20_00133at 134.344 kb on + strand, within MPMX20_00133at 134.349 kb on + strand, within MPMX20_00133at 134.350 kb on - strand, within MPMX20_00133at 134.370 kb on + strand, within MPMX20_00133at 134.370 kb on + strand, within MPMX20_00133at 134.389 kb on + strand, within MPMX20_00133at 134.389 kb on + strand, within MPMX20_00133at 134.397 kb on - strand, within MPMX20_00133at 134.432 kb on + strand, within MPMX20_00133at 134.484 kb on + strand, within MPMX20_00133at 134.529 kb on - strand, within MPMX20_00133at 134.549 kb on - strand, within MPMX20_00133at 134.566 kb on + strand, within MPMX20_00133at 134.702 kb on + strandat 134.712 kb on + strandat 134.712 kb on + strandat 134.715 kb on - strandat 134.715 kb on - strandat 134.717 kb on + strandat 134.720 kb on - strandat 134.720 kb on - strandat 134.720 kb on - strandat 134.786 kb on + strandat 134.791 kb on + strandat 134.856 kb on - strand, within MPMX20_00134at 134.909 kb on - strand, within MPMX20_00134at 134.925 kb on + strand, within MPMX20_00134at 134.928 kb on + strand, within MPMX20_00134at 135.109 kb on - strand, within MPMX20_00134at 135.140 kb on - strand, within MPMX20_00134at 135.140 kb on - strand, within MPMX20_00134at 135.140 kb on - strand, within MPMX20_00134at 135.163 kb on - strand, within MPMX20_00134at 135.213 kb on + strand, within MPMX20_00134at 135.221 kb on - strand, within MPMX20_00134at 135.242 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.309 kb on + strand, within MPMX20_00134at 135.347 kb on + strand, within MPMX20_00134at 135.413 kb on + strand, within MPMX20_00134at 135.457 kb on - strand, within MPMX20_00134at 135.486 kb on + strand, within MPMX20_00134at 135.486 kb on + strand, within MPMX20_00134at 135.496 kb on + strand, within MPMX20_00134at 135.533 kb on + strand, within MPMX20_00134at 135.536 kb on - strand, within MPMX20_00134at 135.576 kb on + strand, within MPMX20_00134at 135.584 kb on - strand, within MPMX20_00134at 135.637 kb on + strand, within MPMX20_00134at 135.665 kb on + strand, within MPMX20_00134at 135.694 kb on + strand, within MPMX20_00134at 135.705 kb on + strand, within MPMX20_00134at 135.705 kb on + strand, within MPMX20_00134

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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133,204 + MPMX20_00131 0.86 +0.0
133,224 + MPMX20_00131 0.87 +0.0
133,233 + MPMX20_00131 0.88 +3.4
133,241 - MPMX20_00131 0.88 +0.4
133,251 - MPMX20_00131 0.89 +0.3
133,337 - -1.6
133,343 - +2.0
133,343 - +0.4
133,343 - -0.4
133,343 - +0.4
133,405 - -0.1
133,432 + +0.4
133,460 - +3.4
133,491 - +4.0
133,637 + +0.7
133,678 - +1.0
133,791 + MPMX20_00132 0.18 +0.2
133,870 + MPMX20_00132 0.40 -0.4
133,918 - MPMX20_00132 0.53 -2.6
134,030 + MPMX20_00132 0.84 -1.1
134,043 - MPMX20_00132 0.88 +0.4
134,123 + +0.4
134,123 + +0.3
134,123 + +0.5
134,131 - +0.3
134,131 - -0.8
134,131 - -1.5
134,135 - -2.6
134,256 - MPMX20_00133 0.19 +1.0
134,260 + MPMX20_00133 0.19 -0.0
134,260 + MPMX20_00133 0.19 -2.3
134,284 + MPMX20_00133 0.24 -2.1
134,307 + MPMX20_00133 0.27 +1.0
134,315 - MPMX20_00133 0.29 +1.0
134,331 + MPMX20_00133 0.31 -1.7
134,344 + MPMX20_00133 0.34 +0.4
134,349 + MPMX20_00133 0.35 +2.0
134,350 - MPMX20_00133 0.35 -3.3
134,370 + MPMX20_00133 0.38 -2.3
134,370 + MPMX20_00133 0.38 +2.0
134,389 + MPMX20_00133 0.41 -3.0
134,389 + MPMX20_00133 0.41 -2.0
134,397 - MPMX20_00133 0.43 +0.4
134,432 + MPMX20_00133 0.49 -2.6
134,484 + MPMX20_00133 0.57 -0.6
134,529 - MPMX20_00133 0.65 -0.8
134,549 - MPMX20_00133 0.68 -0.0
134,566 + MPMX20_00133 0.71 -2.6
134,702 + -2.0
134,712 + -0.0
134,712 + +1.0
134,715 - +0.4
134,715 - +0.7
134,717 + +0.7
134,720 - +1.0
134,720 - +2.1
134,720 - -0.3
134,786 + -2.6
134,791 + -2.7
134,856 - MPMX20_00134 0.11 +0.7
134,909 - MPMX20_00134 0.15 +1.7
134,925 + MPMX20_00134 0.17 +2.0
134,928 + MPMX20_00134 0.17 -1.5
135,109 - MPMX20_00134 0.33 +1.1
135,140 - MPMX20_00134 0.36 +0.3
135,140 - MPMX20_00134 0.36 -0.3
135,140 - MPMX20_00134 0.36 +1.2
135,163 - MPMX20_00134 0.38 -0.5
135,213 + MPMX20_00134 0.42 +2.0
135,221 - MPMX20_00134 0.43 +2.0
135,242 + MPMX20_00134 0.44 -2.0
135,309 + MPMX20_00134 0.50 -4.0
135,309 + MPMX20_00134 0.50 -2.2
135,309 + MPMX20_00134 0.50 -3.9
135,309 + MPMX20_00134 0.50 -2.0
135,309 + MPMX20_00134 0.50 -1.8
135,309 + MPMX20_00134 0.50 -2.1
135,347 + MPMX20_00134 0.54 -3.6
135,413 + MPMX20_00134 0.59 -2.2
135,457 - MPMX20_00134 0.63 -0.3
135,486 + MPMX20_00134 0.66 -3.3
135,486 + MPMX20_00134 0.66 +0.4
135,496 + MPMX20_00134 0.66 -1.0
135,533 + MPMX20_00134 0.70 -2.4
135,536 - MPMX20_00134 0.70 +0.0
135,576 + MPMX20_00134 0.73 -2.6
135,584 - MPMX20_00134 0.74 -0.8
135,637 + MPMX20_00134 0.79 +0.4
135,665 + MPMX20_00134 0.81 -3.0
135,694 + MPMX20_00134 0.84 -2.3
135,705 + MPMX20_00134 0.85 -3.9
135,705 + MPMX20_00134 0.85 -2.5

Or see this region's nucleotide sequence