Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00129

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00128 and MPMX20_00129 are separated by 182 nucleotidesMPMX20_00129 and MPMX20_00130 overlap by 4 nucleotidesMPMX20_00130 and MPMX20_00131 overlap by 4 nucleotides MPMX20_00128: MPMX20_00128 - 4-hydroxybenzoate transporter PcaK, at 128,306 to 129,646 _00128 MPMX20_00129: MPMX20_00129 - L-lactate dehydrogenase, at 129,829 to 131,016 _00129 MPMX20_00130: MPMX20_00130 - Putative L-lactate dehydrogenase operon regulatory protein, at 131,013 to 131,786 _00130 MPMX20_00131: MPMX20_00131 - L-lactate permease, at 131,783 to 133,438 _00131 Position (kb) 129 130 131 132Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 128.868 kb on - strand, within MPMX20_00128at 128.904 kb on - strand, within MPMX20_00128at 128.956 kb on + strand, within MPMX20_00128at 128.968 kb on - strand, within MPMX20_00128at 129.011 kb on - strand, within MPMX20_00128at 129.070 kb on + strand, within MPMX20_00128at 129.078 kb on - strand, within MPMX20_00128at 129.085 kb on + strand, within MPMX20_00128at 129.085 kb on - strand, within MPMX20_00128at 129.103 kb on + strand, within MPMX20_00128at 129.106 kb on - strand, within MPMX20_00128at 129.109 kb on + strand, within MPMX20_00128at 129.111 kb on - strand, within MPMX20_00128at 129.111 kb on - strand, within MPMX20_00128at 129.111 kb on - strand, within MPMX20_00128at 129.127 kb on - strand, within MPMX20_00128at 129.138 kb on - strand, within MPMX20_00128at 129.143 kb on - strand, within MPMX20_00128at 129.239 kb on - strand, within MPMX20_00128at 129.261 kb on + strand, within MPMX20_00128at 129.442 kb on + strand, within MPMX20_00128at 129.442 kb on + strand, within MPMX20_00128at 129.442 kb on + strand, within MPMX20_00128at 129.457 kb on - strand, within MPMX20_00128at 129.510 kb on + strand, within MPMX20_00128at 129.510 kb on + strand, within MPMX20_00128at 129.513 kb on - strandat 129.518 kb on - strandat 129.538 kb on - strandat 129.560 kb on + strandat 129.560 kb on + strandat 129.568 kb on - strandat 129.621 kb on - strandat 129.650 kb on - strandat 129.654 kb on + strandat 129.654 kb on + strandat 129.662 kb on - strandat 129.797 kb on - strandat 129.802 kb on + strandat 129.814 kb on - strandat 129.841 kb on + strandat 129.844 kb on - strandat 129.931 kb on + strandat 129.939 kb on - strandat 129.973 kb on + strand, within MPMX20_00129at 129.991 kb on + strand, within MPMX20_00129at 129.994 kb on - strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.001 kb on + strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.009 kb on - strand, within MPMX20_00129at 130.013 kb on + strand, within MPMX20_00129at 130.021 kb on - strand, within MPMX20_00129at 130.043 kb on - strand, within MPMX20_00129at 130.160 kb on + strand, within MPMX20_00129at 130.194 kb on + strand, within MPMX20_00129at 130.201 kb on + strand, within MPMX20_00129at 130.209 kb on - strand, within MPMX20_00129at 130.211 kb on - strand, within MPMX20_00129at 130.211 kb on - strand, within MPMX20_00129at 130.233 kb on - strand, within MPMX20_00129at 130.280 kb on - strand, within MPMX20_00129at 130.280 kb on - strand, within MPMX20_00129at 130.297 kb on + strand, within MPMX20_00129at 130.303 kb on + strand, within MPMX20_00129at 130.303 kb on + strand, within MPMX20_00129at 130.370 kb on - strand, within MPMX20_00129at 130.409 kb on - strand, within MPMX20_00129at 130.464 kb on + strand, within MPMX20_00129at 130.558 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.563 kb on + strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.571 kb on - strand, within MPMX20_00129at 130.576 kb on - strand, within MPMX20_00129at 130.580 kb on + strand, within MPMX20_00129at 130.580 kb on + strand, within MPMX20_00129at 130.588 kb on - strand, within MPMX20_00129at 130.588 kb on - strand, within MPMX20_00129at 130.599 kb on - strand, within MPMX20_00129at 130.599 kb on - strand, within MPMX20_00129at 130.636 kb on - strand, within MPMX20_00129at 130.643 kb on - strand, within MPMX20_00129at 130.668 kb on - strand, within MPMX20_00129at 130.669 kb on - strand, within MPMX20_00129at 130.683 kb on + strand, within MPMX20_00129at 130.704 kb on + strand, within MPMX20_00129at 130.704 kb on + strand, within MPMX20_00129at 130.712 kb on - strand, within MPMX20_00129at 130.749 kb on - strand, within MPMX20_00129at 130.832 kb on + strand, within MPMX20_00129at 130.841 kb on - strand, within MPMX20_00129at 130.853 kb on - strand, within MPMX20_00129at 130.904 kb on + strandat 130.914 kb on + strandat 130.922 kb on - strandat 130.933 kb on - strandat 131.025 kb on - strandat 131.104 kb on - strand, within MPMX20_00130at 131.112 kb on + strand, within MPMX20_00130at 131.126 kb on - strand, within MPMX20_00130at 131.126 kb on - strand, within MPMX20_00130at 131.230 kb on - strand, within MPMX20_00130at 131.236 kb on - strand, within MPMX20_00130at 131.268 kb on - strand, within MPMX20_00130at 131.270 kb on + strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.298 kb on - strand, within MPMX20_00130at 131.346 kb on - strand, within MPMX20_00130at 131.359 kb on - strand, within MPMX20_00130at 131.376 kb on + strand, within MPMX20_00130at 131.384 kb on - strand, within MPMX20_00130at 131.395 kb on - strand, within MPMX20_00130at 131.397 kb on + strand, within MPMX20_00130at 131.501 kb on - strand, within MPMX20_00130at 131.549 kb on - strand, within MPMX20_00130at 131.554 kb on - strand, within MPMX20_00130at 131.556 kb on + strand, within MPMX20_00130at 131.556 kb on + strand, within MPMX20_00130at 131.589 kb on + strand, within MPMX20_00130at 131.603 kb on + strand, within MPMX20_00130at 131.614 kb on - strand, within MPMX20_00130at 131.619 kb on + strand, within MPMX20_00130at 131.663 kb on - strand, within MPMX20_00130at 131.773 kb on - strandat 131.798 kb on + strandat 131.818 kb on - strandat 131.818 kb on - strandat 131.820 kb on + strandat 131.828 kb on - strandat 131.843 kb on + strandat 131.843 kb on + strandat 131.851 kb on - strandat 131.856 kb on - strandat 131.879 kb on - strandat 131.882 kb on + strandat 131.892 kb on + strandat 131.918 kb on + strandat 132.016 kb on - strand, within MPMX20_00131

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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128,868 - MPMX20_00128 0.42 +0.7
128,904 - MPMX20_00128 0.45 -3.5
128,956 + MPMX20_00128 0.48 -0.3
128,968 - MPMX20_00128 0.49 +2.0
129,011 - MPMX20_00128 0.53 +0.4
129,070 + MPMX20_00128 0.57 +0.4
129,078 - MPMX20_00128 0.58 -1.2
129,085 + MPMX20_00128 0.58 -0.0
129,085 - MPMX20_00128 0.58 -0.3
129,103 + MPMX20_00128 0.59 -0.0
129,106 - MPMX20_00128 0.60 +1.1
129,109 + MPMX20_00128 0.60 -2.0
129,111 - MPMX20_00128 0.60 -1.7
129,111 - MPMX20_00128 0.60 +0.3
129,111 - MPMX20_00128 0.60 -0.4
129,127 - MPMX20_00128 0.61 -0.5
129,138 - MPMX20_00128 0.62 -1.1
129,143 - MPMX20_00128 0.62 +0.2
129,239 - MPMX20_00128 0.70 +1.6
129,261 + MPMX20_00128 0.71 +0.1
129,442 + MPMX20_00128 0.85 +0.7
129,442 + MPMX20_00128 0.85 -0.1
129,442 + MPMX20_00128 0.85 +2.3
129,457 - MPMX20_00128 0.86 -1.3
129,510 + MPMX20_00128 0.90 +0.8
129,510 + MPMX20_00128 0.90 -1.1
129,513 - -0.1
129,518 - +0.7
129,538 - -2.9
129,560 + -0.0
129,560 + -1.0
129,568 - +0.4
129,621 - +2.0
129,650 - +0.7
129,654 + -1.3
129,654 + +1.0
129,662 - +0.7
129,797 - -1.1
129,802 + +1.5
129,814 - +0.0
129,841 + -1.5
129,844 - -0.5
129,931 + +0.5
129,939 - +0.1
129,973 + MPMX20_00129 0.12 -0.3
129,991 + MPMX20_00129 0.14 -0.7
129,994 - MPMX20_00129 0.14 +0.2
130,001 + MPMX20_00129 0.14 +1.7
130,001 + MPMX20_00129 0.14 -3.6
130,001 + MPMX20_00129 0.14 -0.9
130,001 + MPMX20_00129 0.14 +0.2
130,001 + MPMX20_00129 0.14 +2.0
130,001 + MPMX20_00129 0.14 +0.4
130,001 + MPMX20_00129 0.14 +1.0
130,001 + MPMX20_00129 0.14 -0.4
130,001 + MPMX20_00129 0.14 +0.6
130,001 + MPMX20_00129 0.14 -3.3
130,001 + MPMX20_00129 0.14 +0.9
130,009 - MPMX20_00129 0.15 +0.3
130,009 - MPMX20_00129 0.15 +0.3
130,009 - MPMX20_00129 0.15 +1.3
130,009 - MPMX20_00129 0.15 -0.4
130,009 - MPMX20_00129 0.15 +0.7
130,009 - MPMX20_00129 0.15 -1.5
130,009 - MPMX20_00129 0.15 -0.3
130,009 - MPMX20_00129 0.15 +0.4
130,009 - MPMX20_00129 0.15 -1.2
130,009 - MPMX20_00129 0.15 +0.4
130,013 + MPMX20_00129 0.15 +0.0
130,021 - MPMX20_00129 0.16 -0.3
130,043 - MPMX20_00129 0.18 +4.0
130,160 + MPMX20_00129 0.28 +0.3
130,194 + MPMX20_00129 0.31 -0.2
130,201 + MPMX20_00129 0.31 -2.8
130,209 - MPMX20_00129 0.32 -3.2
130,211 - MPMX20_00129 0.32 -0.1
130,211 - MPMX20_00129 0.32 -1.3
130,233 - MPMX20_00129 0.34 +0.2
130,280 - MPMX20_00129 0.38 -0.8
130,280 - MPMX20_00129 0.38 +0.9
130,297 + MPMX20_00129 0.39 +1.1
130,303 + MPMX20_00129 0.40 +0.5
130,303 + MPMX20_00129 0.40 -0.7
130,370 - MPMX20_00129 0.46 -1.6
130,409 - MPMX20_00129 0.49 +0.2
130,464 + MPMX20_00129 0.53 -0.6
130,558 + MPMX20_00129 0.61 +0.4
130,563 + MPMX20_00129 0.62 -1.0
130,563 + MPMX20_00129 0.62 -2.3
130,563 + MPMX20_00129 0.62 -2.2
130,563 + MPMX20_00129 0.62 +0.9
130,571 - MPMX20_00129 0.62 +1.4
130,571 - MPMX20_00129 0.62 +1.1
130,571 - MPMX20_00129 0.62 -1.0
130,571 - MPMX20_00129 0.62 +0.1
130,576 - MPMX20_00129 0.63 +1.1
130,580 + MPMX20_00129 0.63 +0.1
130,580 + MPMX20_00129 0.63 -0.5
130,588 - MPMX20_00129 0.64 +1.6
130,588 - MPMX20_00129 0.64 -0.3
130,599 - MPMX20_00129 0.65 -0.4
130,599 - MPMX20_00129 0.65 -2.7
130,636 - MPMX20_00129 0.68 -0.3
130,643 - MPMX20_00129 0.69 +0.9
130,668 - MPMX20_00129 0.71 -2.6
130,669 - MPMX20_00129 0.71 -0.6
130,683 + MPMX20_00129 0.72 +0.4
130,704 + MPMX20_00129 0.74 +0.3
130,704 + MPMX20_00129 0.74 +0.2
130,712 - MPMX20_00129 0.74 -0.9
130,749 - MPMX20_00129 0.77 -0.8
130,832 + MPMX20_00129 0.84 -0.7
130,841 - MPMX20_00129 0.85 +0.7
130,853 - MPMX20_00129 0.86 +1.7
130,904 + +1.1
130,914 + +0.8
130,922 - +0.3
130,933 - -2.5
131,025 - -0.0
131,104 - MPMX20_00130 0.12 +0.8
131,112 + MPMX20_00130 0.13 +1.6
131,126 - MPMX20_00130 0.15 +0.5
131,126 - MPMX20_00130 0.15 -0.1
131,230 - MPMX20_00130 0.28 +0.0
131,236 - MPMX20_00130 0.29 +0.2
131,268 - MPMX20_00130 0.33 +0.4
131,270 + MPMX20_00130 0.33 -1.5
131,298 - MPMX20_00130 0.37 -0.2
131,298 - MPMX20_00130 0.37 -1.4
131,298 - MPMX20_00130 0.37 -1.0
131,346 - MPMX20_00130 0.43 +0.3
131,359 - MPMX20_00130 0.45 -0.7
131,376 + MPMX20_00130 0.47 +0.3
131,384 - MPMX20_00130 0.48 -0.6
131,395 - MPMX20_00130 0.49 +1.4
131,397 + MPMX20_00130 0.50 -0.6
131,501 - MPMX20_00130 0.63 -0.2
131,549 - MPMX20_00130 0.69 -0.4
131,554 - MPMX20_00130 0.70 +0.4
131,556 + MPMX20_00130 0.70 -0.4
131,556 + MPMX20_00130 0.70 -0.6
131,589 + MPMX20_00130 0.74 +2.4
131,603 + MPMX20_00130 0.76 +1.0
131,614 - MPMX20_00130 0.78 +2.0
131,619 + MPMX20_00130 0.78 +1.1
131,663 - MPMX20_00130 0.84 -1.7
131,773 - -0.2
131,798 + -1.0
131,818 - +2.7
131,818 - +0.9
131,820 + -1.0
131,828 - +0.8
131,843 + +0.7
131,843 + -0.8
131,851 - -0.2
131,856 - +1.3
131,879 - -0.1
131,882 + -0.2
131,892 + +0.7
131,918 + +0.1
132,016 - MPMX20_00131 0.14 -1.0

Or see this region's nucleotide sequence