Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00006

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00005 and MPMX20_00006 are separated by 109 nucleotidesMPMX20_00006 and MPMX20_00007 are separated by 113 nucleotides MPMX20_00005: MPMX20_00005 - HTH-type transcriptional regulator PgrR, at 6,198 to 7,145 _00005 MPMX20_00006: MPMX20_00006 - Alcohol dehydrogenase, at 7,255 to 8,280 _00006 MPMX20_00007: MPMX20_00007 - Sugar phosphatase YidA, at 8,394 to 9,206 _00007 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 6.292 kb on - strandat 6.373 kb on + strand, within MPMX20_00005at 6.381 kb on - strand, within MPMX20_00005at 6.407 kb on + strand, within MPMX20_00005at 6.407 kb on + strand, within MPMX20_00005at 6.441 kb on + strand, within MPMX20_00005at 6.446 kb on + strand, within MPMX20_00005at 6.497 kb on + strand, within MPMX20_00005at 6.497 kb on + strand, within MPMX20_00005at 6.497 kb on + strand, within MPMX20_00005at 6.505 kb on - strand, within MPMX20_00005at 6.505 kb on - strand, within MPMX20_00005at 6.540 kb on + strand, within MPMX20_00005at 6.601 kb on + strand, within MPMX20_00005at 6.601 kb on + strand, within MPMX20_00005at 6.609 kb on - strand, within MPMX20_00005at 6.609 kb on - strand, within MPMX20_00005at 6.640 kb on + strand, within MPMX20_00005at 6.647 kb on + strand, within MPMX20_00005at 6.665 kb on - strand, within MPMX20_00005at 6.671 kb on - strand, within MPMX20_00005at 6.683 kb on + strand, within MPMX20_00005at 6.683 kb on + strand, within MPMX20_00005at 6.683 kb on + strand, within MPMX20_00005at 6.691 kb on - strand, within MPMX20_00005at 6.691 kb on - strand, within MPMX20_00005at 6.691 kb on - strand, within MPMX20_00005at 6.691 kb on - strand, within MPMX20_00005at 6.693 kb on + strand, within MPMX20_00005at 6.701 kb on - strand, within MPMX20_00005at 6.731 kb on - strand, within MPMX20_00005at 6.805 kb on + strand, within MPMX20_00005at 6.850 kb on - strand, within MPMX20_00005at 6.873 kb on + strand, within MPMX20_00005at 6.873 kb on + strand, within MPMX20_00005at 6.881 kb on - strand, within MPMX20_00005at 6.883 kb on - strand, within MPMX20_00005at 6.889 kb on + strand, within MPMX20_00005at 6.910 kb on - strand, within MPMX20_00005at 6.971 kb on + strand, within MPMX20_00005at 6.971 kb on + strand, within MPMX20_00005at 6.979 kb on - strand, within MPMX20_00005at 6.979 kb on - strand, within MPMX20_00005at 7.001 kb on + strand, within MPMX20_00005at 7.002 kb on + strand, within MPMX20_00005at 7.009 kb on - strand, within MPMX20_00005at 7.009 kb on - strand, within MPMX20_00005at 7.009 kb on - strand, within MPMX20_00005at 7.090 kb on - strandat 7.222 kb on + strandat 7.230 kb on - strandat 7.230 kb on - strandat 7.267 kb on + strandat 7.267 kb on + strandat 7.275 kb on - strandat 7.277 kb on + strandat 7.285 kb on - strandat 7.285 kb on - strandat 7.288 kb on + strandat 7.305 kb on + strandat 7.328 kb on - strandat 7.351 kb on - strandat 7.353 kb on - strandat 7.353 kb on - strandat 7.370 kb on + strand, within MPMX20_00006at 7.370 kb on - strand, within MPMX20_00006at 7.375 kb on - strand, within MPMX20_00006at 7.473 kb on + strand, within MPMX20_00006at 7.483 kb on - strand, within MPMX20_00006at 7.497 kb on + strand, within MPMX20_00006at 7.505 kb on - strand, within MPMX20_00006at 7.505 kb on - strand, within MPMX20_00006at 7.561 kb on + strand, within MPMX20_00006at 7.580 kb on - strand, within MPMX20_00006at 7.591 kb on - strand, within MPMX20_00006at 7.683 kb on + strand, within MPMX20_00006at 7.690 kb on + strand, within MPMX20_00006at 7.691 kb on + strand, within MPMX20_00006at 7.698 kb on - strand, within MPMX20_00006at 7.698 kb on - strand, within MPMX20_00006at 7.698 kb on - strand, within MPMX20_00006at 7.698 kb on - strand, within MPMX20_00006at 7.698 kb on - strand, within MPMX20_00006at 7.708 kb on - strand, within MPMX20_00006at 7.718 kb on + strand, within MPMX20_00006at 7.719 kb on + strand, within MPMX20_00006at 7.726 kb on - strand, within MPMX20_00006at 7.726 kb on - strand, within MPMX20_00006at 7.756 kb on - strand, within MPMX20_00006at 7.756 kb on - strand, within MPMX20_00006at 7.783 kb on - strand, within MPMX20_00006at 7.823 kb on + strand, within MPMX20_00006at 7.824 kb on - strand, within MPMX20_00006at 7.913 kb on - strand, within MPMX20_00006at 7.914 kb on + strand, within MPMX20_00006at 7.917 kb on - strand, within MPMX20_00006at 7.919 kb on + strand, within MPMX20_00006at 7.937 kb on - strand, within MPMX20_00006at 8.000 kb on - strand, within MPMX20_00006at 8.104 kb on - strand, within MPMX20_00006at 8.120 kb on + strand, within MPMX20_00006at 8.132 kb on + strand, within MPMX20_00006at 8.235 kb on - strandat 8.289 kb on + strandat 8.297 kb on - strandat 8.359 kb on + strandat 8.360 kb on + strandat 8.360 kb on + strandat 8.368 kb on - strandat 8.370 kb on + strandat 8.390 kb on + strandat 8.390 kb on + strandat 8.398 kb on - strandat 8.443 kb on - strandat 8.448 kb on - strandat 8.511 kb on + strand, within MPMX20_00007at 8.538 kb on + strand, within MPMX20_00007at 8.554 kb on - strand, within MPMX20_00007at 8.595 kb on + strand, within MPMX20_00007at 8.603 kb on - strand, within MPMX20_00007at 8.603 kb on - strand, within MPMX20_00007at 8.618 kb on - strand, within MPMX20_00007at 8.719 kb on + strand, within MPMX20_00007at 8.735 kb on + strand, within MPMX20_00007at 8.735 kb on + strand, within MPMX20_00007at 8.738 kb on + strand, within MPMX20_00007at 8.743 kb on - strand, within MPMX20_00007at 8.746 kb on - strand, within MPMX20_00007at 8.746 kb on - strand, within MPMX20_00007at 8.762 kb on + strand, within MPMX20_00007at 8.780 kb on + strand, within MPMX20_00007at 8.887 kb on + strand, within MPMX20_00007at 8.908 kb on - strand, within MPMX20_00007at 8.933 kb on + strand, within MPMX20_00007at 8.941 kb on - strand, within MPMX20_00007at 9.099 kb on + strand, within MPMX20_00007at 9.240 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
remove
6,292 - -0.0
6,373 + MPMX20_00005 0.18 +0.9
6,381 - MPMX20_00005 0.19 -0.3
6,407 + MPMX20_00005 0.22 +1.5
6,407 + MPMX20_00005 0.22 -1.8
6,441 + MPMX20_00005 0.26 +1.0
6,446 + MPMX20_00005 0.26 +0.2
6,497 + MPMX20_00005 0.32 +0.9
6,497 + MPMX20_00005 0.32 +6.3
6,497 + MPMX20_00005 0.32 -0.5
6,505 - MPMX20_00005 0.32 +0.7
6,505 - MPMX20_00005 0.32 +0.8
6,540 + MPMX20_00005 0.36 -1.7
6,601 + MPMX20_00005 0.43 +3.4
6,601 + MPMX20_00005 0.43 -1.3
6,609 - MPMX20_00005 0.43 +0.8
6,609 - MPMX20_00005 0.43 -1.0
6,640 + MPMX20_00005 0.47 -1.8
6,647 + MPMX20_00005 0.47 +0.7
6,665 - MPMX20_00005 0.49 +0.9
6,671 - MPMX20_00005 0.50 -0.3
6,683 + MPMX20_00005 0.51 +1.2
6,683 + MPMX20_00005 0.51 +0.3
6,683 + MPMX20_00005 0.51 +0.5
6,691 - MPMX20_00005 0.52 +1.6
6,691 - MPMX20_00005 0.52 +0.2
6,691 - MPMX20_00005 0.52 +0.4
6,691 - MPMX20_00005 0.52 -1.8
6,693 + MPMX20_00005 0.52 +1.1
6,701 - MPMX20_00005 0.53 +0.2
6,731 - MPMX20_00005 0.56 +0.4
6,805 + MPMX20_00005 0.64 -0.5
6,850 - MPMX20_00005 0.69 +1.9
6,873 + MPMX20_00005 0.71 +0.7
6,873 + MPMX20_00005 0.71 +1.7
6,881 - MPMX20_00005 0.72 -2.7
6,883 - MPMX20_00005 0.72 +1.0
6,889 + MPMX20_00005 0.73 -0.3
6,910 - MPMX20_00005 0.75 +0.4
6,971 + MPMX20_00005 0.82 +0.4
6,971 + MPMX20_00005 0.82 -2.1
6,979 - MPMX20_00005 0.82 -0.2
6,979 - MPMX20_00005 0.82 -0.3
7,001 + MPMX20_00005 0.85 +0.0
7,002 + MPMX20_00005 0.85 -1.3
7,009 - MPMX20_00005 0.86 +1.7
7,009 - MPMX20_00005 0.86 -1.2
7,009 - MPMX20_00005 0.86 +1.0
7,090 - -0.0
7,222 + +1.3
7,230 - +0.8
7,230 - -0.2
7,267 + +2.2
7,267 + -3.3
7,275 - +1.3
7,277 + -0.3
7,285 - +2.4
7,285 - +0.5
7,288 + -0.8
7,305 + -0.7
7,328 - +1.5
7,351 - -0.0
7,353 - -1.5
7,353 - -1.1
7,370 + MPMX20_00006 0.11 +0.2
7,370 - MPMX20_00006 0.11 -0.0
7,375 - MPMX20_00006 0.12 +0.5
7,473 + MPMX20_00006 0.21 -0.4
7,483 - MPMX20_00006 0.22 -0.5
7,497 + MPMX20_00006 0.24 +0.0
7,505 - MPMX20_00006 0.24 +2.2
7,505 - MPMX20_00006 0.24 +1.3
7,561 + MPMX20_00006 0.30 +0.4
7,580 - MPMX20_00006 0.32 -0.3
7,591 - MPMX20_00006 0.33 -0.7
7,683 + MPMX20_00006 0.42 -0.3
7,690 + MPMX20_00006 0.42 +0.5
7,691 + MPMX20_00006 0.42 +1.3
7,698 - MPMX20_00006 0.43 -1.2
7,698 - MPMX20_00006 0.43 -0.1
7,698 - MPMX20_00006 0.43 +0.1
7,698 - MPMX20_00006 0.43 +1.8
7,698 - MPMX20_00006 0.43 +0.6
7,708 - MPMX20_00006 0.44 +1.3
7,718 + MPMX20_00006 0.45 +0.7
7,719 + MPMX20_00006 0.45 -1.0
7,726 - MPMX20_00006 0.46 -2.1
7,726 - MPMX20_00006 0.46 +1.5
7,756 - MPMX20_00006 0.49 -0.0
7,756 - MPMX20_00006 0.49 +0.2
7,783 - MPMX20_00006 0.51 -0.2
7,823 + MPMX20_00006 0.55 +3.0
7,824 - MPMX20_00006 0.55 -0.6
7,913 - MPMX20_00006 0.64 +0.4
7,914 + MPMX20_00006 0.64 +0.2
7,917 - MPMX20_00006 0.65 +2.2
7,919 + MPMX20_00006 0.65 +1.5
7,937 - MPMX20_00006 0.66 -1.8
8,000 - MPMX20_00006 0.73 +1.9
8,104 - MPMX20_00006 0.83 +1.0
8,120 + MPMX20_00006 0.84 -0.9
8,132 + MPMX20_00006 0.85 +2.6
8,235 - -2.3
8,289 + +1.5
8,297 - +0.9
8,359 + -1.2
8,360 + +0.6
8,360 + +0.4
8,368 - -0.4
8,370 + +0.1
8,390 + +2.4
8,390 + -2.3
8,398 - +2.0
8,443 - -0.3
8,448 - +1.7
8,511 + MPMX20_00007 0.14 -0.7
8,538 + MPMX20_00007 0.18 -0.7
8,554 - MPMX20_00007 0.20 +0.3
8,595 + MPMX20_00007 0.25 +0.1
8,603 - MPMX20_00007 0.26 -0.8
8,603 - MPMX20_00007 0.26 +0.4
8,618 - MPMX20_00007 0.28 +0.4
8,719 + MPMX20_00007 0.40 -1.8
8,735 + MPMX20_00007 0.42 -1.9
8,735 + MPMX20_00007 0.42 -0.0
8,738 + MPMX20_00007 0.42 +1.0
8,743 - MPMX20_00007 0.43 +1.6
8,746 - MPMX20_00007 0.43 -0.4
8,746 - MPMX20_00007 0.43 -1.5
8,762 + MPMX20_00007 0.45 +0.7
8,780 + MPMX20_00007 0.47 +0.7
8,887 + MPMX20_00007 0.61 -0.6
8,908 - MPMX20_00007 0.63 +1.0
8,933 + MPMX20_00007 0.66 -1.2
8,941 - MPMX20_00007 0.67 +0.2
9,099 + MPMX20_00007 0.87 -0.6
9,240 - +0.7

Or see this region's nucleotide sequence