Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04162 and MPMX20_04163 are separated by 21 nucleotides MPMX20_04163 and MPMX20_04164 are separated by 10 nucleotides MPMX20_04164 and MPMX20_04165 are separated by 110 nucleotides MPMX20_04165 and MPMX20_04166 overlap by 11 nucleotides
MPMX20_04162: MPMX20_04162 - 3-dehydroquinate dehydratase, at 4,365,658 to 4,366,110
_04162
MPMX20_04163: MPMX20_04163 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 4,366,132 to 4,366,593
_04163
MPMX20_04164: MPMX20_04164 - Biotin carboxylase, at 4,366,604 to 4,367,953
_04164
MPMX20_04165: MPMX20_04165 - putative membrane protein YhdT, at 4,368,064 to 4,368,306
_04165
MPMX20_04166: MPMX20_04166 - Sodium/pantothenate symporter, at 4,368,296 to 4,369,747
_04166
Position (kb) 4366
4367
4368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4365.774 kb on + strand, within MPMX20_04162 at 4365.784 kb on + strand, within MPMX20_04162 at 4365.820 kb on + strand, within MPMX20_04162 at 4365.837 kb on + strand, within MPMX20_04162 at 4365.845 kb on + strand, within MPMX20_04162 at 4365.845 kb on + strand, within MPMX20_04162 at 4365.856 kb on + strand, within MPMX20_04162 at 4365.856 kb on + strand, within MPMX20_04162 at 4365.877 kb on + strand, within MPMX20_04162 at 4365.877 kb on + strand, within MPMX20_04162 at 4365.906 kb on + strand, within MPMX20_04162 at 4365.906 kb on + strand, within MPMX20_04162 at 4365.983 kb on + strand, within MPMX20_04162 at 4365.983 kb on + strand, within MPMX20_04162 at 4365.983 kb on + strand, within MPMX20_04162 at 4368.029 kb on - strand at 4368.079 kb on + strand at 4368.079 kb on + strand at 4368.087 kb on - strand at 4368.119 kb on - strand, within MPMX20_04165 at 4368.238 kb on + strand, within MPMX20_04165 at 4368.243 kb on + strand, within MPMX20_04165 at 4368.243 kb on + strand, within MPMX20_04165 at 4368.243 kb on + strand, within MPMX20_04165 at 4368.251 kb on - strand, within MPMX20_04165 at 4368.331 kb on + strand at 4368.375 kb on - strand at 4368.429 kb on + strand at 4368.464 kb on - strand, within MPMX20_04166 at 4368.490 kb on + strand, within MPMX20_04166 at 4368.520 kb on - strand, within MPMX20_04166 at 4368.537 kb on + strand, within MPMX20_04166 at 4368.568 kb on + strand, within MPMX20_04166 at 4368.615 kb on + strand, within MPMX20_04166 at 4368.615 kb on + strand, within MPMX20_04166 at 4368.635 kb on - strand, within MPMX20_04166 at 4368.686 kb on - strand, within MPMX20_04166 at 4368.737 kb on + strand, within MPMX20_04166 at 4368.742 kb on + strand, within MPMX20_04166 at 4368.786 kb on + strand, within MPMX20_04166 at 4368.798 kb on + strand, within MPMX20_04166 at 4368.806 kb on - strand, within MPMX20_04166 at 4368.808 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.928 kb on - strand, within MPMX20_04166 at 4368.928 kb on - strand, within MPMX20_04166
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 4,365,774 + MPMX20_04162 0.26 +1.8 4,365,784 + MPMX20_04162 0.28 +1.8 4,365,820 + MPMX20_04162 0.36 -2.2 4,365,837 + MPMX20_04162 0.40 -1.9 4,365,845 + MPMX20_04162 0.41 -0.2 4,365,845 + MPMX20_04162 0.41 -3.3 4,365,856 + MPMX20_04162 0.44 -2.9 4,365,856 + MPMX20_04162 0.44 -1.5 4,365,877 + MPMX20_04162 0.48 -2.0 4,365,877 + MPMX20_04162 0.48 -1.0 4,365,906 + MPMX20_04162 0.55 -2.4 4,365,906 + MPMX20_04162 0.55 -2.8 4,365,983 + MPMX20_04162 0.72 +0.8 4,365,983 + MPMX20_04162 0.72 -0.2 4,365,983 + MPMX20_04162 0.72 -2.0 4,368,029 - -0.5 4,368,079 + -0.4 4,368,079 + -0.5 4,368,087 - +0.0 4,368,119 - MPMX20_04165 0.23 -1.1 4,368,238 + MPMX20_04165 0.72 +0.1 4,368,243 + MPMX20_04165 0.74 -2.0 4,368,243 + MPMX20_04165 0.74 -0.6 4,368,243 + MPMX20_04165 0.74 -0.7 4,368,251 - MPMX20_04165 0.77 -0.8 4,368,331 + -0.8 4,368,375 - +0.9 4,368,429 + -0.1 4,368,464 - MPMX20_04166 0.12 -0.7 4,368,490 + MPMX20_04166 0.13 -0.9 4,368,520 - MPMX20_04166 0.15 +0.5 4,368,537 + MPMX20_04166 0.17 +2.1 4,368,568 + MPMX20_04166 0.19 -0.2 4,368,615 + MPMX20_04166 0.22 +0.7 4,368,615 + MPMX20_04166 0.22 -0.4 4,368,635 - MPMX20_04166 0.23 +0.1 4,368,686 - MPMX20_04166 0.27 +0.3 4,368,737 + MPMX20_04166 0.30 -0.9 4,368,742 + MPMX20_04166 0.31 +0.1 4,368,786 + MPMX20_04166 0.34 +0.0 4,368,798 + MPMX20_04166 0.35 -1.1 4,368,806 - MPMX20_04166 0.35 +0.3 4,368,808 + MPMX20_04166 0.35 -0.1 4,368,920 + MPMX20_04166 0.43 -0.2 4,368,920 + MPMX20_04166 0.43 -1.2 4,368,920 + MPMX20_04166 0.43 +0.2 4,368,920 + MPMX20_04166 0.43 -0.1 4,368,920 + MPMX20_04166 0.43 +0.2 4,368,928 - MPMX20_04166 0.44 -1.0 4,368,928 - MPMX20_04166 0.44 -0.0
Or see this region's nucleotide sequence