Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00898 and MPMX20_00899 are separated by 0 nucleotides MPMX20_00899 and MPMX20_00900 are separated by 55 nucleotides MPMX20_00900 and MPMX20_00901 are separated by 132 nucleotides MPMX20_00901 and MPMX20_00902 are separated by 386 nucleotides
MPMX20_00898: MPMX20_00898 - hypothetical protein, at 946,750 to 947,466
_00898
MPMX20_00899: MPMX20_00899 - Ribonuclease HI, at 947,467 to 947,934
_00899
MPMX20_00900: MPMX20_00900 - DNA polymerase III subunit epsilon, at 947,990 to 948,730
_00900
MPMX20_00901: MPMX20_00901 - tRNA-Asp, at 948,863 to 948,939
_00901
MPMX20_00902: MPMX20_00902 - Glc operon transcriptional activator, at 949,326 to 950,045
_00902
Position (kb) 947
948
949 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 947.143 kb on + strand, within MPMX20_00898 at 947.157 kb on + strand, within MPMX20_00898 at 947.178 kb on + strand, within MPMX20_00898 at 947.208 kb on + strand, within MPMX20_00898 at 947.216 kb on - strand, within MPMX20_00898 at 947.249 kb on + strand, within MPMX20_00898 at 947.311 kb on + strand, within MPMX20_00898 at 947.311 kb on + strand, within MPMX20_00898 at 947.314 kb on - strand, within MPMX20_00898 at 947.342 kb on + strand, within MPMX20_00898 at 947.349 kb on + strand, within MPMX20_00898 at 947.491 kb on + strand at 947.504 kb on + strand at 947.575 kb on - strand, within MPMX20_00899 at 947.576 kb on - strand, within MPMX20_00899 at 947.707 kb on - strand, within MPMX20_00899 at 947.785 kb on + strand, within MPMX20_00899 at 947.880 kb on + strand, within MPMX20_00899 at 947.903 kb on - strand at 947.996 kb on + strand at 947.996 kb on + strand at 948.967 kb on + strand at 948.980 kb on - strand at 949.343 kb on - strand at 949.374 kb on - strand at 949.410 kb on - strand, within MPMX20_00902 at 949.442 kb on + strand, within MPMX20_00902 at 949.450 kb on - strand, within MPMX20_00902 at 949.456 kb on + strand, within MPMX20_00902 at 949.516 kb on + strand, within MPMX20_00902 at 949.524 kb on - strand, within MPMX20_00902 at 949.550 kb on + strand, within MPMX20_00902 at 949.550 kb on + strand, within MPMX20_00902 at 949.632 kb on - strand, within MPMX20_00902 at 949.682 kb on + strand, within MPMX20_00902 at 949.687 kb on + strand, within MPMX20_00902 at 949.695 kb on - strand, within MPMX20_00902
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 947,143 + MPMX20_00898 0.55 +0.8 947,157 + MPMX20_00898 0.57 +0.1 947,178 + MPMX20_00898 0.60 +1.5 947,208 + MPMX20_00898 0.64 +0.0 947,216 - MPMX20_00898 0.65 -1.4 947,249 + MPMX20_00898 0.70 +0.3 947,311 + MPMX20_00898 0.78 +0.7 947,311 + MPMX20_00898 0.78 +0.7 947,314 - MPMX20_00898 0.79 +0.9 947,342 + MPMX20_00898 0.83 +2.3 947,349 + MPMX20_00898 0.84 +2.3 947,491 + -2.6 947,504 + -1.6 947,575 - MPMX20_00899 0.23 -1.3 947,576 - MPMX20_00899 0.23 -0.1 947,707 - MPMX20_00899 0.51 +1.7 947,785 + MPMX20_00899 0.68 -0.9 947,880 + MPMX20_00899 0.88 -1.1 947,903 - -0.9 947,996 + -0.6 947,996 + +1.4 948,967 + +0.1 948,980 - +0.6 949,343 - +0.4 949,374 - +1.2 949,410 - MPMX20_00902 0.12 +1.5 949,442 + MPMX20_00902 0.16 -0.1 949,450 - MPMX20_00902 0.17 -0.8 949,456 + MPMX20_00902 0.18 +0.1 949,516 + MPMX20_00902 0.26 +1.0 949,524 - MPMX20_00902 0.28 +0.5 949,550 + MPMX20_00902 0.31 +3.1 949,550 + MPMX20_00902 0.31 +1.0 949,632 - MPMX20_00902 0.42 -0.7 949,682 + MPMX20_00902 0.49 +1.1 949,687 + MPMX20_00902 0.50 +2.2 949,695 - MPMX20_00902 0.51 +1.5
Or see this region's nucleotide sequence