Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00738 and MPMX20_00739 are separated by 454 nucleotides MPMX20_00739 and MPMX20_00740 are separated by 18 nucleotides
MPMX20_00738: MPMX20_00738 - 4-hydroxy-tetrahydrodipicolinate reductase, at 761,869 to 762,690
_00738
MPMX20_00739: MPMX20_00739 - Carbamoyl-phosphate synthase small chain, at 763,145 to 764,293
_00739
MPMX20_00740: MPMX20_00740 - Carbamoyl-phosphate synthase large chain, at 764,312 to 767,536
_00740
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 763.157 kb on + strand at 763.206 kb on - strand at 763.331 kb on + strand, within MPMX20_00739 at 763.435 kb on + strand, within MPMX20_00739 at 763.443 kb on - strand, within MPMX20_00739 at 763.456 kb on + strand, within MPMX20_00739 at 763.488 kb on + strand, within MPMX20_00739 at 763.539 kb on - strand, within MPMX20_00739 at 763.555 kb on - strand, within MPMX20_00739 at 763.598 kb on + strand, within MPMX20_00739 at 763.608 kb on + strand, within MPMX20_00739 at 763.616 kb on - strand, within MPMX20_00739 at 763.650 kb on + strand, within MPMX20_00739 at 763.653 kb on + strand, within MPMX20_00739 at 763.856 kb on - strand, within MPMX20_00739 at 763.875 kb on + strand, within MPMX20_00739 at 763.985 kb on + strand, within MPMX20_00739 at 763.990 kb on - strand, within MPMX20_00739 at 764.069 kb on + strand, within MPMX20_00739 at 764.077 kb on - strand, within MPMX20_00739 at 764.153 kb on + strand, within MPMX20_00739 at 764.173 kb on + strand, within MPMX20_00739 at 764.283 kb on - strand at 764.410 kb on - strand at 764.444 kb on + strand at 764.452 kb on - strand at 764.452 kb on - strand at 764.452 kb on - strand at 764.454 kb on + strand at 764.454 kb on + strand at 764.462 kb on - strand at 764.567 kb on + strand at 764.594 kb on + strand at 764.602 kb on - strand at 764.631 kb on + strand at 764.695 kb on - strand, within MPMX20_00740 at 764.759 kb on - strand, within MPMX20_00740 at 764.863 kb on - strand, within MPMX20_00740 at 764.903 kb on - strand, within MPMX20_00740 at 764.910 kb on + strand, within MPMX20_00740 at 765.068 kb on + strand, within MPMX20_00740 at 765.260 kb on - strand, within MPMX20_00740
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4 remove 763,157 + +0.1 763,206 - -1.5 763,331 + MPMX20_00739 0.16 -2.6 763,435 + MPMX20_00739 0.25 +1.7 763,443 - MPMX20_00739 0.26 -1.6 763,456 + MPMX20_00739 0.27 -1.5 763,488 + MPMX20_00739 0.30 +0.7 763,539 - MPMX20_00739 0.34 -1.8 763,555 - MPMX20_00739 0.36 -1.5 763,598 + MPMX20_00739 0.39 +0.7 763,608 + MPMX20_00739 0.40 +0.1 763,616 - MPMX20_00739 0.41 -0.3 763,650 + MPMX20_00739 0.44 +0.7 763,653 + MPMX20_00739 0.44 -2.7 763,856 - MPMX20_00739 0.62 -2.6 763,875 + MPMX20_00739 0.64 -1.8 763,985 + MPMX20_00739 0.73 -2.0 763,990 - MPMX20_00739 0.74 -0.9 764,069 + MPMX20_00739 0.80 -1.3 764,077 - MPMX20_00739 0.81 +0.7 764,153 + MPMX20_00739 0.88 -0.9 764,173 + MPMX20_00739 0.89 +0.1 764,283 - -3.5 764,410 - -0.3 764,444 + +0.7 764,452 - -0.9 764,452 - -1.1 764,452 - +0.1 764,454 + -2.1 764,454 + -0.6 764,462 - -1.3 764,567 + -0.6 764,594 + -1.6 764,602 - -1.5 764,631 + -1.8 764,695 - MPMX20_00740 0.12 -1.3 764,759 - MPMX20_00740 0.14 -0.6 764,863 - MPMX20_00740 0.17 +0.7 764,903 - MPMX20_00740 0.18 -2.4 764,910 + MPMX20_00740 0.19 -0.3 765,068 + MPMX20_00740 0.23 -2.5 765,260 - MPMX20_00740 0.29 -1.8
Or see this region's nucleotide sequence