Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00612

Experiment: Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00609 and MPMX20_00610 are separated by 176 nucleotidesMPMX20_00610 and MPMX20_00611 are separated by 59 nucleotidesMPMX20_00611 and MPMX20_00612 are separated by 81 nucleotidesMPMX20_00612 and MPMX20_00613 are separated by 102 nucleotidesMPMX20_00613 and MPMX20_00614 overlap by 14 nucleotides MPMX20_00609: MPMX20_00609 - HTH-type transcriptional regulator NorG, at 636,027 to 637,442 _00609 MPMX20_00610: MPMX20_00610 - hypothetical protein, at 637,619 to 637,780 _00610 MPMX20_00611: MPMX20_00611 - hypothetical protein, at 637,840 to 638,094 _00611 MPMX20_00612: MPMX20_00612 - HTH-type transcriptional regulatory protein GabR, at 638,176 to 639,564 _00612 MPMX20_00613: MPMX20_00613 - hypothetical protein, at 639,667 to 640,146 _00613 MPMX20_00614: MPMX20_00614 - HTH-type transcriptional regulator PgrR, at 640,133 to 641,035 _00614 Position (kb) 638 639 640Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 637.231 kb on + strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.239 kb on - strand, within MPMX20_00609at 637.265 kb on + strand, within MPMX20_00609at 637.270 kb on + strand, within MPMX20_00609at 637.273 kb on - strand, within MPMX20_00609at 637.310 kb on + strandat 637.310 kb on + strandat 637.318 kb on - strandat 637.318 kb on - strandat 637.337 kb on + strandat 637.345 kb on - strandat 637.383 kb on + strandat 637.383 kb on + strandat 637.390 kb on - strandat 637.391 kb on - strandat 637.402 kb on + strandat 637.402 kb on - strandat 637.482 kb on + strandat 637.682 kb on - strand, within MPMX20_00610at 637.690 kb on - strand, within MPMX20_00610at 637.720 kb on - strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.744 kb on + strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.752 kb on - strand, within MPMX20_00610at 637.789 kb on + strandat 637.802 kb on - strandat 637.816 kb on + strandat 637.816 kb on + strandat 637.824 kb on - strandat 637.907 kb on + strand, within MPMX20_00611at 637.915 kb on - strand, within MPMX20_00611at 637.917 kb on + strand, within MPMX20_00611at 637.917 kb on + strand, within MPMX20_00611at 637.925 kb on - strand, within MPMX20_00611at 637.926 kb on + strand, within MPMX20_00611at 637.977 kb on + strand, within MPMX20_00611at 638.039 kb on + strand, within MPMX20_00611at 638.047 kb on - strand, within MPMX20_00611at 638.156 kb on - strandat 638.163 kb on - strandat 638.173 kb on + strandat 638.202 kb on + strandat 638.202 kb on + strandat 638.240 kb on - strandat 638.245 kb on - strandat 638.247 kb on + strandat 638.251 kb on + strandat 638.255 kb on - strandat 638.259 kb on - strandat 638.270 kb on - strandat 638.275 kb on + strandat 638.323 kb on - strand, within MPMX20_00612at 638.333 kb on + strand, within MPMX20_00612at 638.339 kb on - strand, within MPMX20_00612at 638.384 kb on - strand, within MPMX20_00612at 638.389 kb on - strand, within MPMX20_00612at 638.407 kb on - strand, within MPMX20_00612at 638.429 kb on + strand, within MPMX20_00612at 638.436 kb on - strand, within MPMX20_00612at 638.437 kb on - strand, within MPMX20_00612at 638.447 kb on + strand, within MPMX20_00612at 638.448 kb on - strand, within MPMX20_00612at 638.448 kb on - strand, within MPMX20_00612at 638.471 kb on + strand, within MPMX20_00612at 638.478 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.479 kb on - strand, within MPMX20_00612at 638.578 kb on - strand, within MPMX20_00612at 638.604 kb on - strand, within MPMX20_00612at 638.637 kb on - strand, within MPMX20_00612at 638.721 kb on - strand, within MPMX20_00612at 638.773 kb on - strand, within MPMX20_00612at 638.775 kb on + strand, within MPMX20_00612at 638.789 kb on - strand, within MPMX20_00612at 638.791 kb on + strand, within MPMX20_00612at 638.791 kb on + strand, within MPMX20_00612at 638.802 kb on + strand, within MPMX20_00612at 638.822 kb on - strand, within MPMX20_00612at 638.941 kb on - strand, within MPMX20_00612at 638.943 kb on - strand, within MPMX20_00612at 638.960 kb on + strand, within MPMX20_00612at 639.053 kb on - strand, within MPMX20_00612at 639.078 kb on + strand, within MPMX20_00612at 639.084 kb on - strand, within MPMX20_00612at 639.094 kb on - strand, within MPMX20_00612at 639.262 kb on + strand, within MPMX20_00612at 639.262 kb on + strand, within MPMX20_00612at 639.298 kb on + strand, within MPMX20_00612at 639.324 kb on + strand, within MPMX20_00612at 639.331 kb on + strand, within MPMX20_00612at 639.332 kb on - strand, within MPMX20_00612at 639.354 kb on + strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.362 kb on - strand, within MPMX20_00612at 639.381 kb on + strand, within MPMX20_00612at 639.408 kb on - strand, within MPMX20_00612at 639.408 kb on - strand, within MPMX20_00612at 639.449 kb on + strandat 639.449 kb on + strandat 639.449 kb on + strandat 639.457 kb on - strandat 639.535 kb on + strandat 639.543 kb on - strandat 639.543 kb on - strandat 639.604 kb on + strandat 639.633 kb on + strandat 639.701 kb on - strandat 639.701 kb on - strandat 639.706 kb on - strandat 639.720 kb on + strand, within MPMX20_00613at 639.726 kb on + strand, within MPMX20_00613at 639.806 kb on + strand, within MPMX20_00613at 639.826 kb on - strand, within MPMX20_00613at 639.830 kb on + strand, within MPMX20_00613at 639.830 kb on - strand, within MPMX20_00613at 639.876 kb on - strand, within MPMX20_00613at 639.936 kb on - strand, within MPMX20_00613at 639.936 kb on - strand, within MPMX20_00613at 639.995 kb on - strand, within MPMX20_00613at 640.000 kb on + strand, within MPMX20_00613at 640.003 kb on - strand, within MPMX20_00613at 640.033 kb on - strand, within MPMX20_00613at 640.060 kb on + strand, within MPMX20_00613at 640.114 kb on + strandat 640.133 kb on - strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.262 kb on + strand, within MPMX20_00614at 640.262 kb on + strand, within MPMX20_00614at 640.392 kb on - strand, within MPMX20_00614at 640.425 kb on - strand, within MPMX20_00614at 640.439 kb on - strand, within MPMX20_00614at 640.486 kb on - strand, within MPMX20_00614at 640.530 kb on + strand, within MPMX20_00614

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=SorghumBicolor_Rtx430; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB_Kan50; Time=28_days; NumberPlantsPooled=4
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637,231 + MPMX20_00609 0.85 +4.0
637,239 - MPMX20_00609 0.86 -0.6
637,239 - MPMX20_00609 0.86 +0.2
637,239 - MPMX20_00609 0.86 -1.0
637,265 + MPMX20_00609 0.87 -0.2
637,270 + MPMX20_00609 0.88 +1.2
637,273 - MPMX20_00609 0.88 -0.4
637,310 + -1.7
637,310 + -0.5
637,318 - -0.6
637,318 - +0.5
637,337 + +0.4
637,345 - -0.4
637,383 + -0.4
637,383 + +1.3
637,390 - +0.9
637,391 - -1.4
637,402 + -1.4
637,402 - +0.0
637,482 + +2.1
637,682 - MPMX20_00610 0.39 +0.1
637,690 - MPMX20_00610 0.44 +0.5
637,720 - MPMX20_00610 0.62 +0.8
637,744 + MPMX20_00610 0.77 -0.4
637,744 + MPMX20_00610 0.77 -2.1
637,744 + MPMX20_00610 0.77 +1.1
637,744 + MPMX20_00610 0.77 +1.6
637,744 + MPMX20_00610 0.77 +0.6
637,744 + MPMX20_00610 0.77 +0.3
637,744 + MPMX20_00610 0.77 -0.9
637,744 + MPMX20_00610 0.77 -1.6
637,752 - MPMX20_00610 0.82 +0.1
637,752 - MPMX20_00610 0.82 -0.9
637,752 - MPMX20_00610 0.82 +0.6
637,752 - MPMX20_00610 0.82 +0.1
637,752 - MPMX20_00610 0.82 -2.4
637,752 - MPMX20_00610 0.82 -0.2
637,752 - MPMX20_00610 0.82 +0.3
637,752 - MPMX20_00610 0.82 -0.4
637,752 - MPMX20_00610 0.82 +1.1
637,752 - MPMX20_00610 0.82 +0.1
637,752 - MPMX20_00610 0.82 -0.0
637,789 + +0.1
637,802 - -0.0
637,816 + +0.6
637,816 + -0.5
637,824 - -0.5
637,907 + MPMX20_00611 0.26 -1.2
637,915 - MPMX20_00611 0.29 +1.1
637,917 + MPMX20_00611 0.30 +0.3
637,917 + MPMX20_00611 0.30 +0.1
637,925 - MPMX20_00611 0.33 +1.6
637,926 + MPMX20_00611 0.34 +0.4
637,977 + MPMX20_00611 0.54 +0.1
638,039 + MPMX20_00611 0.78 +1.1
638,047 - MPMX20_00611 0.81 +0.9
638,156 - +0.3
638,163 - -0.5
638,173 + -0.7
638,202 + -0.1
638,202 + -1.1
638,240 - +0.6
638,245 - -0.4
638,247 + -0.5
638,251 + -0.1
638,255 - -0.6
638,259 - +0.7
638,270 - +0.6
638,275 + +0.7
638,323 - MPMX20_00612 0.11 +0.0
638,333 + MPMX20_00612 0.11 -0.3
638,339 - MPMX20_00612 0.12 +0.5
638,384 - MPMX20_00612 0.15 +0.2
638,389 - MPMX20_00612 0.15 -0.5
638,407 - MPMX20_00612 0.17 +1.1
638,429 + MPMX20_00612 0.18 -0.3
638,436 - MPMX20_00612 0.19 -1.3
638,437 - MPMX20_00612 0.19 -0.1
638,447 + MPMX20_00612 0.20 -0.5
638,448 - MPMX20_00612 0.20 -1.2
638,448 - MPMX20_00612 0.20 +0.1
638,471 + MPMX20_00612 0.21 -1.4
638,478 - MPMX20_00612 0.22 +0.6
638,479 - MPMX20_00612 0.22 +1.0
638,479 - MPMX20_00612 0.22 +0.1
638,479 - MPMX20_00612 0.22 +0.2
638,479 - MPMX20_00612 0.22 +0.4
638,578 - MPMX20_00612 0.29 +0.9
638,604 - MPMX20_00612 0.31 -0.3
638,637 - MPMX20_00612 0.33 -0.6
638,721 - MPMX20_00612 0.39 +1.3
638,773 - MPMX20_00612 0.43 +0.8
638,775 + MPMX20_00612 0.43 -0.6
638,789 - MPMX20_00612 0.44 +0.6
638,791 + MPMX20_00612 0.44 +0.6
638,791 + MPMX20_00612 0.44 -0.9
638,802 + MPMX20_00612 0.45 +0.4
638,822 - MPMX20_00612 0.47 +0.1
638,941 - MPMX20_00612 0.55 -0.5
638,943 - MPMX20_00612 0.55 +1.3
638,960 + MPMX20_00612 0.56 +1.4
639,053 - MPMX20_00612 0.63 -0.5
639,078 + MPMX20_00612 0.65 -0.6
639,084 - MPMX20_00612 0.65 -0.6
639,094 - MPMX20_00612 0.66 +0.6
639,262 + MPMX20_00612 0.78 -1.4
639,262 + MPMX20_00612 0.78 +0.4
639,298 + MPMX20_00612 0.81 -1.5
639,324 + MPMX20_00612 0.83 -1.7
639,331 + MPMX20_00612 0.83 -0.7
639,332 - MPMX20_00612 0.83 +0.0
639,354 + MPMX20_00612 0.85 -0.5
639,362 - MPMX20_00612 0.85 -1.1
639,362 - MPMX20_00612 0.85 +0.0
639,362 - MPMX20_00612 0.85 +1.4
639,381 + MPMX20_00612 0.87 +0.2
639,408 - MPMX20_00612 0.89 +1.6
639,408 - MPMX20_00612 0.89 -2.2
639,449 + -0.4
639,449 + -0.7
639,449 + -1.0
639,457 - +0.2
639,535 + +0.1
639,543 - +0.1
639,543 - -0.0
639,604 + -0.4
639,633 + +0.5
639,701 - +0.4
639,701 - -0.0
639,706 - +0.2
639,720 + MPMX20_00613 0.11 +0.3
639,726 + MPMX20_00613 0.12 +1.0
639,806 + MPMX20_00613 0.29 +0.0
639,826 - MPMX20_00613 0.33 +0.3
639,830 + MPMX20_00613 0.34 +0.8
639,830 - MPMX20_00613 0.34 +3.2
639,876 - MPMX20_00613 0.44 -0.3
639,936 - MPMX20_00613 0.56 +0.2
639,936 - MPMX20_00613 0.56 -1.6
639,995 - MPMX20_00613 0.68 +0.6
640,000 + MPMX20_00613 0.69 -1.2
640,003 - MPMX20_00613 0.70 -0.3
640,033 - MPMX20_00613 0.76 -0.4
640,060 + MPMX20_00613 0.82 -0.9
640,114 + -0.4
640,133 - +0.1
640,212 - -1.1
640,212 - +0.3
640,262 + MPMX20_00614 0.14 +1.8
640,262 + MPMX20_00614 0.14 +1.3
640,392 - MPMX20_00614 0.29 -0.2
640,425 - MPMX20_00614 0.32 -0.7
640,439 - MPMX20_00614 0.34 +1.7
640,486 - MPMX20_00614 0.39 -0.4
640,530 + MPMX20_00614 0.44 +0.4

Or see this region's nucleotide sequence